RNA–Protein interactions for RNA: ENST00000345356.10

COL12A1-202, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL12A1, Length 5,886 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-202ENST00000345356 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.41□□□□□ -0.26
COL12A1-202ENST00000345356 COMMD10Q9Y6G5 202 aa13.41□□□□□ -0.26
COL12A1-202ENST00000345356 UGGT2Q9NYU1 1516 aa13.41□□□□□ -0.26
COL12A1-202ENST00000345356 INTS9Q9NV88 658 aaKnown RBP13.41□□□□□ -0.26
COL12A1-202ENST00000345356 MRFAP1Q9Y605 127 aa13.41□□□□□ -0.26
COL12A1-202ENST00000345356 EIF2AK4Q9P2K8 1649 aaKnown RBP13.4□□□□□ -0.26
COL12A1-202ENST00000345356 FAM135BQ49AJ0 1406 aa13.4□□□□□ -0.26
COL12A1-202ENST00000345356 PPIP5K1Q6PFW1 1433 aa13.4□□□□□ -0.26
COL12A1-202ENST00000345356 IKBKBO14920 756 aa13.4□□□□□ -0.26
COL12A1-202ENST00000345356 UHMK1Q8TAS1 419 aaKnown RBP13.4□□□□□ -0.26
COL12A1-202ENST00000345356 ABTB1Q969K4 478 aaPredicted RBP13.4□□□□□ -0.26
COL12A1-202ENST00000345356 CSRNP2Q9H175 543 aa13.4□□□□□ -0.26
COL12A1-202ENST00000345356 NLRC4Q9NPP4 1024 aa13.4□□□□□ -0.26
COL12A1-202ENST00000345356 PPP1R9AQ9ULJ8 1098 aa13.4□□□□□ -0.26
COL12A1-202ENST00000345356 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.4□□□□□ -0.26
COL12A1-202ENST00000345356 SNRPA1P09661 255 aaKnown RBP13.4□□□□□ -0.26
COL12A1-202ENST00000345356 RPL13P26373 211 aaKnown RBP13.4□□□□□ -0.26
COL12A1-202ENST00000345356 YIPF3Q9GZM5 350 aa13.4□□□□□ -0.26
COL12A1-202ENST00000345356 TSPYL2Q9H2G4 693 aaPredicted RBP13.4□□□□□ -0.26
COL12A1-202ENST00000345356 EHMT1Q9H9B1 1298 aa13.4□□□□□ -0.26
COL12A1-202ENST00000345356 SCOCQ9UIL1 159 aa13.4□□□□□ -0.26
COL12A1-202ENST00000345356 ACTN3Q08043 901 aaPredicted RBP13.4□□□□□ -0.26
COL12A1-202ENST00000345356 C2orf54Q08AI8 447 aa13.4□□□□□ -0.26
COL12A1-202ENST00000345356 SPATA1Q5VX52 437 aa13.4□□□□□ -0.26
COL12A1-202ENST00000345356 KCNJ14Q9UNX9 436 aa13.4□□□□□ -0.26
COL12A1-202ENST00000345356 KIF24Q5T7B8 1368 aa13.4□□□□□ -0.26
COL12A1-202ENST00000345356 FLOT1O75955 427 aa13.4□□□□□ -0.26
COL12A1-202ENST00000345356 CCDC65Q8IXS2 484 aa13.4□□□□□ -0.26
COL12A1-202ENST00000345356 ANKRD7Q92527 254 aa13.4□□□□□ -0.26
COL12A1-202ENST00000345356 RBL2Q08999 1139 aa13.39□□□□□ -0.27
COL12A1-202ENST00000345356 MIER3Q7Z3K6 550 aa13.39□□□□□ -0.27
COL12A1-202ENST00000345356 TRIML1Q8N9V2 468 aa13.39□□□□□ -0.27
COL12A1-202ENST00000345356 CLIC4Q9Y696 253 aa13.39□□□□□ -0.27
COL12A1-202ENST00000345356 RIMS2Q9UQ26 1411 aa13.39□□□□□ -0.27
COL12A1-202ENST00000345356 TOPBP1Q92547 1522 aa13.39□□□□□ -0.27
COL12A1-202ENST00000345356 A0A1W2PQ27 194 aa13.39□□□□□ -0.27
COL12A1-202ENST00000345356 A0A1W2PQ64 194 aa13.39□□□□□ -0.27
COL12A1-202ENST00000345356 A0A1W2PQD8 194 aa13.39□□□□□ -0.27
COL12A1-202ENST00000345356 SOWAHDA6NJG2 315 aa13.39□□□□□ -0.27
COL12A1-202ENST00000345356 USP27XA6NNY8 438 aa13.39□□□□□ -0.27
COL12A1-202ENST00000345356 I3L4J1 428 aa13.39□□□□□ -0.27
COL12A1-202ENST00000345356 NR1D1P20393 614 aa13.39□□□□□ -0.27
COL12A1-202ENST00000345356 ARMC9Q7Z3E5 817 aa13.39□□□□□ -0.27
COL12A1-202ENST00000345356 CFAP61Q8NHU2 1237 aa13.39□□□□□ -0.27
COL12A1-202ENST00000345356 IQCDQ96DY2 449 aa13.39□□□□□ -0.27
COL12A1-202ENST00000345356 KRT12Q99456 494 aa13.39□□□□□ -0.27
COL12A1-202ENST00000345356 MYL10Q9BUA6 226 aa13.39□□□□□ -0.27
COL12A1-202ENST00000345356 CCDC169A6NNP5 214 aa13.39□□□□□ -0.27
COL12A1-202ENST00000345356 CDC5LQ99459 802 aaKnown RBP13.39□□□□□ -0.27
COL12A1-202ENST00000345356 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.39□□□□□ -0.27
COL12A1-202ENST00000345356 CTTNBP2NLQ9P2B4 639 aa13.39□□□□□ -0.27
COL12A1-202ENST00000345356 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.39□□□□□ -0.27
COL12A1-202ENST00000345356 NESP48681 1621 aa13.39□□□□□ -0.27
COL12A1-202ENST00000345356 TEX14Q8IWB6 1497 aa13.39□□□□□ -0.27
COL12A1-202ENST00000345356 LETM2Q2VYF4 491 aa13.39□□□□□ -0.27
COL12A1-202ENST00000345356 NCAPH2Q6IBW4 605 aa13.39□□□□□ -0.27
COL12A1-202ENST00000345356 EPB41L5Q9HCM4 733 aa13.39□□□□□ -0.27
COL12A1-202ENST00000345356 NOP53Q9NZM5 478 aaKnown RBP13.39□□□□□ -0.27
COL12A1-202ENST00000345356 ARHGAP42A6NI28 874 aa13.39□□□□□ -0.27
COL12A1-202ENST00000345356 PFKFB2O60825 505 aa13.39□□□□□ -0.27
COL12A1-202ENST00000345356 FAM13AO94988 1023 aa13.39□□□□□ -0.27
COL12A1-202ENST00000345356 EPB41P11171 864 aaKnown RBP13.39□□□□□ -0.27
COL12A1-202ENST00000345356 GNAT2P19087 354 aa13.39□□□□□ -0.27
COL12A1-202ENST00000345356 TNNI2P48788 182 aa13.39□□□□□ -0.27
COL12A1-202ENST00000345356 PDCLQ13371 301 aa13.39□□□□□ -0.27
COL12A1-202ENST00000345356 TNNI3KQ59H18 835 aa13.39□□□□□ -0.27
COL12A1-202ENST00000345356 FPGT-TNNI3KV9GXZ4 949 aa13.39□□□□□ -0.27
COL12A1-202ENST00000345356 UHRF1BP1Q6BDS2 1440 aa13.38□□□□□ -0.27
COL12A1-202ENST00000345356 CTNND1O60716 968 aaKnown RBP13.38□□□□□ -0.27
COL12A1-202ENST00000345356 TMCO4Q5TGY1 634 aa13.38□□□□□ -0.27
COL12A1-202ENST00000345356 TMEM87AQ8NBN3 555 aa13.38□□□□□ -0.27
COL12A1-202ENST00000345356 DBNDD2Q9BQY9 259 aa13.38□□□□□ -0.27
COL12A1-202ENST00000345356 KIF14Q15058 1648 aa13.38□□□□□ -0.27
COL12A1-202ENST00000345356 HEXIM1O94992 359 aaKnown RBP13.38□□□□□ -0.27
COL12A1-202ENST00000345356 PTPROQ16827 1216 aa13.38□□□□□ -0.27
COL12A1-202ENST00000345356 ACRBPQ8NEB7 543 aa13.38□□□□□ -0.27
COL12A1-202ENST00000345356 NUCKS1Q9H1E3 243 aaKnown RBP13.38□□□□□ -0.27
COL12A1-202ENST00000345356 IQGAP2Q13576 1575 aa13.38□□□□□ -0.27
COL12A1-202ENST00000345356 E7EWF7 191 aa13.38□□□□□ -0.27
COL12A1-202ENST00000345356 DNM2P50570 870 aa13.38□□□□□ -0.27
COL12A1-202ENST00000345356 VSTM4Q8IW00 320 aa13.38□□□□□ -0.27
COL12A1-202ENST00000345356 CCDC97Q96F63 343 aaPredicted RBP13.38□□□□□ -0.27
COL12A1-202ENST00000345356 CLIC6Q96NY7 704 aa13.38□□□□□ -0.27
COL12A1-202ENST00000345356 IQSEC3Q9UPP2 1182 aaPredicted RBP13.38□□□□□ -0.27
COL12A1-202ENST00000345356 IRX4P78413 519 aa13.38□□□□□ -0.27
COL12A1-202ENST00000345356 ALS2CLQ60I27 953 aa13.38□□□□□ -0.27
COL12A1-202ENST00000345356 CCDC13Q8IYE1 715 aa13.38□□□□□ -0.27
COL12A1-202ENST00000345356 RILPQ96NA2 401 aa13.38□□□□□ -0.27
COL12A1-202ENST00000345356 TMOD3Q9NYL9 352 aa13.38□□□□□ -0.27
COL12A1-202ENST00000345356 PCDHA5Q9Y5H7 936 aa13.38□□□□□ -0.27
COL12A1-202ENST00000345356 MAGEB6Q8N7X4 407 aa13.38□□□□□ -0.27
COL12A1-202ENST00000345356 ARMC2Q8NEN0 867 aa13.38□□□□□ -0.27
COL12A1-202ENST00000345356 EPC1Q9H2F5 836 aa13.38□□□□□ -0.27
COL12A1-202ENST00000345356 NDUFB9Q9Y6M9 179 aa13.38□□□□□ -0.27
COL12A1-202ENST00000345356 V9GY48 417 aaPredicted RBP13.38□□□□□ -0.27
COL12A1-202ENST00000345356 ADCK5Q3MIX3 580 aa13.37□□□□□ -0.27
COL12A1-202ENST00000345356 SARM1Q6SZW1 724 aa13.37□□□□□ -0.27
COL12A1-202ENST00000345356 ANKRD13CQ8N6S4 541 aa13.37□□□□□ -0.27
COL12A1-202ENST00000345356 MIGA1Q8NAN2 632 aa13.37□□□□□ -0.27
COL12A1-202ENST00000345356 AMFRQ9UKV5 643 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms