RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 STK3Q13188 491 aa9.19□□□□□ -0.94
ATG4A-201ENST00000343524 KARSQ15046 597 aaKnown RBP9.19□□□□□ -0.94
ATG4A-201ENST00000343524 CCDC40Q4G0X9 1142 aa9.19□□□□□ -0.94
ATG4A-201ENST00000343524 NAIF1Q69YI7 327 aaPredicted RBP9.19□□□□□ -0.94
ATG4A-201ENST00000343524 ISM2Q6H9L7 571 aa9.19□□□□□ -0.94
ATG4A-201ENST00000343524 RUFY1Q96T51 708 aa9.19□□□□□ -0.94
ATG4A-201ENST00000343524 MTFR1LQ9H019 292 aa9.19□□□□□ -0.94
ATG4A-201ENST00000343524 GPBP1L1Q9HC44 474 aaPredicted RBP9.19□□□□□ -0.94
ATG4A-201ENST00000343524 PCDHGA4Q9Y5G9 962 aa9.19□□□□□ -0.94
ATG4A-201ENST00000343524 GRIN2DO15399 1336 aa9.18□□□□□ -0.94
ATG4A-201ENST00000343524 KIF1AQ12756 1690 aa9.18□□□□□ -0.94
ATG4A-201ENST00000343524 MPHOSPH10O00566 681 aaKnown RBP9.18□□□□□ -0.94
ATG4A-201ENST00000343524 JAK2O60674 1132 aa9.18□□□□□ -0.94
ATG4A-201ENST00000343524 IPO7O95373 1038 aaKnown RBP9.18□□□□□ -0.94
ATG4A-201ENST00000343524 ACTN3Q08043 901 aaPredicted RBP9.18□□□□□ -0.94
ATG4A-201ENST00000343524 FILIP1LQ4L180 1135 aa9.18□□□□□ -0.94
ATG4A-201ENST00000343524 ZNF569Q5MCW4 686 aa9.18□□□□□ -0.94
ATG4A-201ENST00000343524 WWC2Q6AWC2 1192 aa9.18□□□□□ -0.94
ATG4A-201ENST00000343524 UBE3BQ7Z3V4 1068 aa9.18□□□□□ -0.94
ATG4A-201ENST00000343524 ELOA2Q8IYF1 753 aaPredicted RBP9.18□□□□□ -0.94
ATG4A-201ENST00000343524 C3orf20Q8ND61 904 aa9.18□□□□□ -0.94
ATG4A-201ENST00000343524 TCP11Q8WWU5 503 aa9.18□□□□□ -0.94
ATG4A-201ENST00000343524 P3H4Q92791 437 aa9.18□□□□□ -0.94
ATG4A-201ENST00000343524 HOOK2Q96ED9 719 aa9.18□□□□□ -0.94
ATG4A-201ENST00000343524 NEK1Q96PY6 1258 aa9.18□□□□□ -0.94
ATG4A-201ENST00000343524 PAIP2Q9BPZ3 127 aaKnown RBP9.18□□□□□ -0.94
ATG4A-201ENST00000343524 NUCKS1Q9H1E3 243 aaKnown RBP9.18□□□□□ -0.94
ATG4A-201ENST00000343524 TMX4Q9H1E5 349 aaPredicted RBP9.18□□□□□ -0.94
ATG4A-201ENST00000343524 ADGRG1Q9Y653 693 aa9.18□□□□□ -0.94
ATG4A-201ENST00000343524 OVOS2A0A0G2JMS6 1433 aa9.18□□□□□ -0.94
ATG4A-201ENST00000343524 OVOS2A0A0J9YW53 1432 aa9.18□□□□□ -0.94
ATG4A-201ENST00000343524 OVOS2Q6IE36 1432 aa9.18□□□□□ -0.94
ATG4A-201ENST00000343524 MAP3K15Q6ZN16 1313 aa9.18□□□□□ -0.94
ATG4A-201ENST00000343524 NCAPD2Q15021 1401 aa9.17□□□□□ -0.94
ATG4A-201ENST00000343524 PLSCR1O15162 318 aa9.17□□□□□ -0.94
ATG4A-201ENST00000343524 ZNF202O95125 648 aa9.17□□□□□ -0.94
ATG4A-201ENST00000343524 ATP1A3P13637 1013 aa9.17□□□□□ -0.94
ATG4A-201ENST00000343524 PAX7P23759 505 aa9.17□□□□□ -0.94
ATG4A-201ENST00000343524 CMA1P23946 247 aa9.17□□□□□ -0.94
ATG4A-201ENST00000343524 AKAP17AQ02040 695 aaKnown RBP9.17□□□□□ -0.94
ATG4A-201ENST00000343524 OS9Q13438 667 aaPredicted RBP9.17□□□□□ -0.94
ATG4A-201ENST00000343524 MTX1Q13505 466 aa9.17□□□□□ -0.94
ATG4A-201ENST00000343524 RASGRP2Q7LDG7 609 aa9.17□□□□□ -0.94
ATG4A-201ENST00000343524 PPP1R42Q7Z4L9 355 aa9.17□□□□□ -0.94
ATG4A-201ENST00000343524 PPFIBP1Q86W92 1011 aa9.17□□□□□ -0.94
ATG4A-201ENST00000343524 CNGA4Q8IV77 575 aa9.17□□□□□ -0.94
ATG4A-201ENST00000343524 MAB21L3Q8N8X9 362 aa9.17□□□□□ -0.94
ATG4A-201ENST00000343524 LINC00301Q8NCQ3 95 aa9.17□□□□□ -0.94
ATG4A-201ENST00000343524 SH3GL2Q99962 352 aa9.17□□□□□ -0.94
ATG4A-201ENST00000343524 HSD3B7Q9H2F3 369 aa9.17□□□□□ -0.94
ATG4A-201ENST00000343524 MRPL44Q9H9J2 332 aaKnown RBP9.17□□□□□ -0.94
ATG4A-201ENST00000343524 SUGCTQ9HAC7 445 aa9.17□□□□□ -0.94
ATG4A-201ENST00000343524 TSPYL4Q9UJ04 414 aa9.17□□□□□ -0.94
ATG4A-201ENST00000343524 NEDD4P46934 1319 aa9.17□□□□□ -0.94
ATG4A-201ENST00000343524 SPATA31A1Q5TZJ5 1347 aa9.17□□□□□ -0.94
ATG4A-201ENST00000343524 MON2Q7Z3U7 1717 aa9.17□□□□□ -0.94
ATG4A-201ENST00000343524 A0A1B0GVL5 298 aa9.17□□□□□ -0.94
ATG4A-201ENST00000343524 PTPDC1A2A3K4 754 aa9.17□□□□□ -0.94
ATG4A-201ENST00000343524 MYO1FO00160 1098 aa9.17□□□□□ -0.94
ATG4A-201ENST00000343524 SPTLC2O15270 562 aa9.17□□□□□ -0.94
ATG4A-201ENST00000343524 RTN2O75298 545 aa9.17□□□□□ -0.94
ATG4A-201ENST00000343524 ALDH1L1O75891 902 aa9.17□□□□□ -0.94
ATG4A-201ENST00000343524 RASSF9O75901 435 aa9.17□□□□□ -0.94
ATG4A-201ENST00000343524 GCKP35557 465 aa9.17□□□□□ -0.94
ATG4A-201ENST00000343524 GGCXP38435 758 aa9.17□□□□□ -0.94
ATG4A-201ENST00000343524 LSM11P83369 360 aaKnown RBP eCLIP9.17□□□□□ -0.94
ATG4A-201ENST00000343524 POTEEQ6S8J3 1075 aa9.17□□□□□ -0.94
ATG4A-201ENST00000343524 ANKRD13DQ6ZTN6 518 aa9.17□□□□□ -0.94
ATG4A-201ENST00000343524 EHBP1Q8NDI1 1231 aa9.17□□□□□ -0.94
ATG4A-201ENST00000343524 NSUN7Q8NE18 718 aaKnown RBP9.17□□□□□ -0.94
ATG4A-201ENST00000343524 TMC2Q8TDI7 906 aa9.17□□□□□ -0.94
ATG4A-201ENST00000343524 CALR3Q96L12 384 aaKnown RBP9.17□□□□□ -0.94
ATG4A-201ENST00000343524 TEX13AQ9BXU3 409 aaPredicted RBP9.17□□□□□ -0.94
ATG4A-201ENST00000343524 CD248Q9HCU0 757 aa9.17□□□□□ -0.94
ATG4A-201ENST00000343524 FAM184BQ9ULE4 1060 aa9.17□□□□□ -0.94
ATG4A-201ENST00000343524 LHX6Q9UPM6 363 aa9.17□□□□□ -0.94
ATG4A-201ENST00000343524 A0A087WWV3 80 aa9.16□□□□□ -0.94
ATG4A-201ENST00000343524 BIN1O00499 593 aa9.16□□□□□ -0.94
ATG4A-201ENST00000343524 IRF6O14896 467 aa9.16□□□□□ -0.94
ATG4A-201ENST00000343524 GBP2P32456 591 aaPredicted RBP9.16□□□□□ -0.94
ATG4A-201ENST00000343524 PRPHP41219 470 aa9.16□□□□□ -0.94
ATG4A-201ENST00000343524 SEMA3FQ13275 785 aa9.16□□□□□ -0.94
ATG4A-201ENST00000343524 NMIQ13287 307 aaPredicted RBP9.16□□□□□ -0.94
ATG4A-201ENST00000343524 USPL1Q5W0Q7 1092 aa9.16□□□□□ -0.94
ATG4A-201ENST00000343524 ALS2CLQ60I27 953 aa9.16□□□□□ -0.94
ATG4A-201ENST00000343524 G2E3Q7L622 706 aa9.16□□□□□ -0.94
ATG4A-201ENST00000343524 PARP9Q8IXQ6 854 aa9.16□□□□□ -0.94
ATG4A-201ENST00000343524 ZNF483Q8TF39 744 aaPredicted RBP9.16□□□□□ -0.94
ATG4A-201ENST00000343524 DPF2Q92785 391 aa9.16□□□□□ -0.94
ATG4A-201ENST00000343524 SLC24A3Q9HC58 644 aa9.16□□□□□ -0.94
ATG4A-201ENST00000343524 LZTFL1Q9NQ48 299 aa9.16□□□□□ -0.94
ATG4A-201ENST00000343524 STK26Q9P289 416 aa9.16□□□□□ -0.94
ATG4A-201ENST00000343524 EMILIN1Q9Y6C2 1016 aa9.16□□□□□ -0.94
ATG4A-201ENST00000343524 ZC3H4Q9UPT8 1303 aaKnown RBP9.16□□□□□ -0.94
ATG4A-201ENST00000343524 TBC1D8BQ0IIM8 1120 aa9.15□□□□□ -0.94
ATG4A-201ENST00000343524 TMED8Q6PL24 325 aaPredicted RBP9.15□□□□□ -0.94
ATG4A-201ENST00000343524 SYNE3Q6ZMZ3 975 aa9.15□□□□□ -0.94
ATG4A-201ENST00000343524 TMTC1Q8IUR5 882 aa9.15□□□□□ -0.94
ATG4A-201ENST00000343524 SLC35F6Q8N357 371 aa9.15□□□□□ -0.94
ATG4A-201ENST00000343524 CCHCR1Q8TD31 782 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms