RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 FBXO41Q8TF61 875 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 ATRIPQ8WXE1 791 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 EPSTI1Q96J88 318 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 BRD8Q9H0E9 1235 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 CNOT10Q9H9A5 744 aaKnown RBP4.62□□□□□ -1.67
NEDD4-201ENST00000338963 NUP160Q12769 1436 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 N4BP3O15049 544 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 PHACTR2O75167 634 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 CCT8P50990 548 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 ZNF131P52739 623 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 E2F5Q15329 346 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 TMEM259Q4ZIN3 620 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 OLFM4Q6UX06 510 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 CCDC129Q6ZRS4 1044 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 NAF1Q96HR8 494 aaKnown RBP4.62□□□□□ -1.67
NEDD4-201ENST00000338963 ABHD8Q96I13 439 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 HPCAL4Q9UM19 191 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 ZNF510Q9Y2H8 683 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 HECW1Q76N89 1606 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 SENP3-EIF4A1A0A087X0R7 540 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 GCOM1H8Y6P7 765 aaPredicted RBP4.62□□□□□ -1.67
NEDD4-201ENST00000338963 ACTN4O43707 911 aaKnown RBP4.62□□□□□ -1.67
NEDD4-201ENST00000338963 ACADSP16219 412 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 HDAC4P56524 1084 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 MYBPC3Q14896 1274 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 PLEKHO1Q53GL0 409 aaPredicted RBP4.62□□□□□ -1.67
NEDD4-201ENST00000338963 MAATS1Q7Z4T9 603 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 SPATA24Q86W54 205 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 SCAIQ8N9R8 606 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 RMND1Q9NWS8 449 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 ITM2BQ9Y287 266 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 ADGRL3Q9HAR2 1447 aa4.62□□□□□ -1.67
NEDD4-201ENST00000338963 PPP1R37O75864 691 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 KRT9P35527 623 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 ZBED6P86452 979 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 RUFY4Q6ZNE9 571 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 TTC39CQ8N584 583 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 RNF10Q8N5U6 811 aaKnown RBP4.61□□□□□ -1.67
NEDD4-201ENST00000338963 RETREG2Q8NC44 543 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 VPS37AQ8NEZ2 397 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 PIP4K2CQ8TBX8 421 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 TMEM165Q9HC07 324 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 G3BP2Q9UN86 482 aaKnown RBP4.61□□□□□ -1.67
NEDD4-201ENST00000338963 CLTAP09496 248 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 ALOX15P16050 662 aaPredicted RBP4.61□□□□□ -1.67
NEDD4-201ENST00000338963 PMS2P54278 862 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 EPHB4P54760 987 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 ATP2B2Q01814 1243 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 ADRM1Q16186 407 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 CCDC122Q5T0U0 273 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 CREB3L3Q68CJ9 461 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 NXNQ6DKJ4 435 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 NCAPH2Q6IBW4 605 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 POTEEQ6S8J3 1075 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 RAB11FIP4Q86YS3 637 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 TRPC4APQ8TEL6 797 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 CASP10Q92851 521 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 NR1H4Q96RI1 486 aaPredicted RBP4.61□□□□□ -1.67
NEDD4-201ENST00000338963 GALNT8Q9NY28 637 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 DACT1Q9NYF0 836 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 UBAP1Q9NZ09 502 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 SAMD15Q9P1V8 674 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 TTC7AQ9ULT0 858 aaPredicted RBP4.61□□□□□ -1.67
NEDD4-201ENST00000338963 RABL2BQ9UNT1 228 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 C2CD2Q9Y426 696 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 BZW2Q9Y6E2 419 aaKnown RBP4.61□□□□□ -1.67
NEDD4-201ENST00000338963 ERCC6Q03468 1493 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 H0YC42 278 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 TPD52P55327 224 aaPredicted RBP4.61□□□□□ -1.67
NEDD4-201ENST00000338963 CYLC2Q14093 348 aaPredicted RBP4.61□□□□□ -1.67
NEDD4-201ENST00000338963 SAFB2Q14151 953 aaKnown RBP eCLIP4.61□□□□□ -1.67
NEDD4-201ENST00000338963 TMCO4Q5TGY1 634 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 C11orf74Q86VG3 221 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 DIS3LQ8TF46 1054 aaKnown RBP4.61□□□□□ -1.67
NEDD4-201ENST00000338963 ZNF473Q8WTR7 871 aaKnown RBP4.61□□□□□ -1.67
NEDD4-201ENST00000338963 NDNQ99608 321 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 SYNCQ9H7C4 482 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 IL20Q9NYY1 176 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 NRBP1Q9UHY1 535 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 PRPF6O94906 941 aaKnown RBP4.61□□□□□ -1.67
NEDD4-201ENST00000338963 PSMA5P28066 241 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 POLE2P56282 527 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 PHEXP78562 749 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 PTGISQ16647 500 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 EMC10Q5UCC4 262 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 NANOGNBQ7Z5D8 188 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 SH3GL2Q99962 352 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 MTUS1Q9ULD2 1270 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 COMMD10Q9Y6G5 202 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 VPS37CA5D8V6 355 aaPredicted RBP4.61□□□□□ -1.67
NEDD4-201ENST00000338963 U2AF1L5P0DN76 240 aaPredicted RBP4.61□□□□□ -1.67
NEDD4-201ENST00000338963 USP14P54578 494 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 RHBDL3P58872 404 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 U2AF1Q01081 240 aaKnown RBP eCLIP4.61□□□□□ -1.67
NEDD4-201ENST00000338963 KLC1Q07866 573 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 FAAH2Q6GMR7 532 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 SYT2Q8N9I0 419 aaPredicted RBP4.61□□□□□ -1.67
NEDD4-201ENST00000338963 TRIML1Q8N9V2 468 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 DRC3Q9H069 523 aa4.61□□□□□ -1.67
NEDD4-201ENST00000338963 COL17A1Q9UMD9 1497 aaPredicted RBP4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms