RNA–Protein interactions for RNA: ENST00000337841.4

SPTLC1-202, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SPTLC1, Length 946 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-202ENST00000337841 CCDC178Q5BJE1 867 aa14.07□□□□□ -0.16
SPTLC1-202ENST00000337841 OTUD7BQ6GQQ9 843 aa14.07□□□□□ -0.16
SPTLC1-202ENST00000337841 FASTKD5Q7L8L6 764 aaKnown RBP14.07□□□□□ -0.16
SPTLC1-202ENST00000337841 RALYLQ86SE5 291 aaKnown RBP14.07□□□□□ -0.16
SPTLC1-202ENST00000337841 USP26Q9BXU7 913 aa14.07□□□□□ -0.16
SPTLC1-202ENST00000337841 NBPF3Q9H094 633 aa14.07□□□□□ -0.16
SPTLC1-202ENST00000337841 SH2D4AQ9H788 454 aa14.07□□□□□ -0.16
SPTLC1-202ENST00000337841 ARHGEF10LQ9HCE6 1279 aa14.07□□□□□ -0.16
SPTLC1-202ENST00000337841 KCNH4Q9UQ05 1017 aa14.07□□□□□ -0.16
SPTLC1-202ENST00000337841 MYH1P12882 1939 aa14.07□□□□□ -0.16
SPTLC1-202ENST00000337841 TRIM75PA6NK02 468 aa14.06□□□□□ -0.16
SPTLC1-202ENST00000337841 E7EWF7 191 aa14.06□□□□□ -0.16
SPTLC1-202ENST00000337841 USP14P54578 494 aa14.06□□□□□ -0.16
SPTLC1-202ENST00000337841 BACE1P56817 501 aa14.06□□□□□ -0.16
SPTLC1-202ENST00000337841 ATP2B2Q01814 1243 aa14.06□□□□□ -0.16
SPTLC1-202ENST00000337841 ICA1Q05084 483 aa14.06□□□□□ -0.16
SPTLC1-202ENST00000337841 KRT32Q14532 448 aa14.06□□□□□ -0.16
SPTLC1-202ENST00000337841 SHROOM1Q2M3G4 852 aaPredicted RBP14.06□□□□□ -0.16
SPTLC1-202ENST00000337841 CCDC84Q86UT8 332 aaPredicted RBP14.06□□□□□ -0.16
SPTLC1-202ENST00000337841 NCOA7Q8NI08 942 aa14.06□□□□□ -0.16
SPTLC1-202ENST00000337841 FEZ1Q99689 392 aa14.06□□□□□ -0.16
SPTLC1-202ENST00000337841 TCP11L1Q9NUJ3 509 aa14.06□□□□□ -0.16
SPTLC1-202ENST00000337841 TMOD4Q9NZQ9 345 aa14.06□□□□□ -0.16
SPTLC1-202ENST00000337841 NYAP2Q9P242 653 aa14.06□□□□□ -0.16
SPTLC1-202ENST00000337841 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.06□□□□□ -0.16
SPTLC1-202ENST00000337841 TACC3Q9Y6A5 838 aa14.06□□□□□ -0.16
SPTLC1-202ENST00000337841 FOCADQ5VW36 1801 aa14.06□□□□□ -0.16
SPTLC1-202ENST00000337841 CCL15-CCL14A0A0B4J2E2 113 aa14.05□□□□□ -0.16
SPTLC1-202ENST00000337841 TESPA1A2RU30 521 aaPredicted RBP14.05□□□□□ -0.16
SPTLC1-202ENST00000337841 B4E1Z4 1266 aa14.05□□□□□ -0.16
SPTLC1-202ENST00000337841 KDM4AO75164 1064 aa14.05□□□□□ -0.16
SPTLC1-202ENST00000337841 EEF2P13639 858 aaKnown RBP14.05□□□□□ -0.16
SPTLC1-202ENST00000337841 HSPA4P34932 840 aa14.05□□□□□ -0.16
SPTLC1-202ENST00000337841 TM4SF4P48230 202 aa14.05□□□□□ -0.16
SPTLC1-202ENST00000337841 CCL15Q16663 113 aa14.05□□□□□ -0.16
SPTLC1-202ENST00000337841 TSGA10IPQ3SY00 556 aa14.05□□□□□ -0.16
SPTLC1-202ENST00000337841 USP17L2Q6R6M4 530 aa14.05□□□□□ -0.16
SPTLC1-202ENST00000337841 IQCA1Q86XH1 822 aa14.05□□□□□ -0.16
SPTLC1-202ENST00000337841 MS4A4AQ96JQ5 239 aa14.05□□□□□ -0.16
SPTLC1-202ENST00000337841 TTC14Q96N46 770 aa14.05□□□□□ -0.16
SPTLC1-202ENST00000337841 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.05□□□□□ -0.16
SPTLC1-202ENST00000337841 MTMR4Q9NYA4 1195 aa14.05□□□□□ -0.16
SPTLC1-202ENST00000337841 ZSWIM5Q9P217 1185 aa14.05□□□□□ -0.16
SPTLC1-202ENST00000337841 CLIP2Q9UDT6 1046 aa14.05□□□□□ -0.16
SPTLC1-202ENST00000337841 NAV1Q8NEY1 1877 aa14.04□□□□□ -0.16
SPTLC1-202ENST00000337841 CDK5RAP2Q96SN8 1893 aa14.04□□□□□ -0.16
SPTLC1-202ENST00000337841 IGKV6D-41A0A0C4DH26 115 aa14.04□□□□□ -0.16
SPTLC1-202ENST00000337841 A0A0G2JLL6 359 aaPredicted RBP14.04□□□□□ -0.16
SPTLC1-202ENST00000337841 TTLL1O95922 423 aa14.04□□□□□ -0.16
SPTLC1-202ENST00000337841 MAP2K1Q02750 393 aaPredicted RBP14.04□□□□□ -0.16
SPTLC1-202ENST00000337841 SH3D19Q5HYK7 790 aa14.04□□□□□ -0.16
SPTLC1-202ENST00000337841 GADL1Q6ZQY3 521 aa14.04□□□□□ -0.16
SPTLC1-202ENST00000337841 PRRT2Q7Z6L0 340 aaPredicted RBP14.04□□□□□ -0.16
SPTLC1-202ENST00000337841 ACER1Q8TDN7 264 aa14.04□□□□□ -0.16
SPTLC1-202ENST00000337841 CEP95Q96GE4 821 aa14.04□□□□□ -0.16
SPTLC1-202ENST00000337841 ZIC5Q96T25 663 aa14.04□□□□□ -0.16
SPTLC1-202ENST00000337841 KIAA1683Q9H0B3 1180 aa14.04□□□□□ -0.16
SPTLC1-202ENST00000337841 TMX2Q9Y320 296 aa14.04□□□□□ -0.16
SPTLC1-202ENST00000337841 ALDH1A1P00352 501 aa14.03□□□□□ -0.16
SPTLC1-202ENST00000337841 HMGCS2P54868 508 aa14.03□□□□□ -0.16
SPTLC1-202ENST00000337841 MTMR2Q13614 643 aa14.03□□□□□ -0.16
SPTLC1-202ENST00000337841 C8orf34Q49A92 452 aa14.03□□□□□ -0.16
SPTLC1-202ENST00000337841 SIAH1Q8IUQ4 282 aa14.03□□□□□ -0.16
SPTLC1-202ENST00000337841 PROCA1Q8NCQ7 364 aaPredicted RBP14.03□□□□□ -0.16
SPTLC1-202ENST00000337841 BRI3BPQ8WY22 251 aa14.03□□□□□ -0.16
SPTLC1-202ENST00000337841 KCNB2Q92953 911 aa14.03□□□□□ -0.16
SPTLC1-202ENST00000337841 MKL1Q969V6 931 aa14.03□□□□□ -0.16
SPTLC1-202ENST00000337841 NEK1Q96PY6 1258 aa14.03□□□□□ -0.16
SPTLC1-202ENST00000337841 UBAC1Q9BSL1 405 aa14.03□□□□□ -0.16
SPTLC1-202ENST00000337841 BEGAINQ9BUH8 593 aa14.03□□□□□ -0.16
SPTLC1-202ENST00000337841 IL17RBQ9NRM6 502 aa14.03□□□□□ -0.16
SPTLC1-202ENST00000337841 SYNPO2Q9UMS6 1093 aa14.03□□□□□ -0.16
SPTLC1-202ENST00000337841 STX8Q9UNK0 236 aa14.03□□□□□ -0.16
SPTLC1-202ENST00000337841 NEDD4P46934 1319 aa14.03□□□□□ -0.16
SPTLC1-202ENST00000337841 BAZ2AQ9UIF9 1905 aaKnown RBP14.03□□□□□ -0.16
SPTLC1-202ENST00000337841 A0A1W2PRG0 241 aa14.02□□□□□ -0.17
SPTLC1-202ENST00000337841 ERICH2A1L162 156 aa14.02□□□□□ -0.17
SPTLC1-202ENST00000337841 HMGB1P09429 215 aaKnown RBP14.02□□□□□ -0.17
SPTLC1-202ENST00000337841 PSMA5P28066 241 aa14.02□□□□□ -0.17
SPTLC1-202ENST00000337841 MCM5P33992 734 aa14.02□□□□□ -0.17
SPTLC1-202ENST00000337841 PABPC4Q13310 644 aaKnown RBP eCLIP14.02□□□□□ -0.17
SPTLC1-202ENST00000337841 SART3Q15020 963 aaKnown RBP14.02□□□□□ -0.17
SPTLC1-202ENST00000337841 ANKRD23Q86SG2 305 aa14.02□□□□□ -0.17
SPTLC1-202ENST00000337841 DGKHQ86XP1 1220 aa14.02□□□□□ -0.17
SPTLC1-202ENST00000337841 IFNL1Q8IU54 200 aa14.02□□□□□ -0.17
SPTLC1-202ENST00000337841 RASEFQ8IZ41 740 aa14.02□□□□□ -0.17
SPTLC1-202ENST00000337841 ZSCAN10Q96SZ4 725 aaPredicted RBP14.02□□□□□ -0.17
SPTLC1-202ENST00000337841 UPF2Q9HAU5 1272 aaKnown RBP14.02□□□□□ -0.17
SPTLC1-202ENST00000337841 GOPCQ9HD26 462 aa14.02□□□□□ -0.17
SPTLC1-202ENST00000337841 DDX60LQ5H9U9 1706 aaKnown RBP14.01□□□□□ -0.17
SPTLC1-202ENST00000337841 PLIN4Q96Q06 1357 aa14.01□□□□□ -0.17
SPTLC1-202ENST00000337841 RAD21O60216 631 aa14.01□□□□□ -0.17
SPTLC1-202ENST00000337841 SEC24BO95487 1268 aa14.01□□□□□ -0.17
SPTLC1-202ENST00000337841 TOP1P11387 765 aaKnown RBP14.01□□□□□ -0.17
SPTLC1-202ENST00000337841 ZYXQ15942 572 aaKnown RBP14.01□□□□□ -0.17
SPTLC1-202ENST00000337841 STOX1Q6ZVD7 989 aa14.01□□□□□ -0.17
SPTLC1-202ENST00000337841 CLEC10AQ8IUN9 316 aa14.01□□□□□ -0.17
SPTLC1-202ENST00000337841 LPAR1Q92633 364 aa14.01□□□□□ -0.17
SPTLC1-202ENST00000337841 ZKSCAN3Q9BRR0 538 aa14.01□□□□□ -0.17
SPTLC1-202ENST00000337841 MTA3Q9BTC8 594 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms