RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 WNT7AO00755 349 aa17.05■□□□□ 0.32
CLCNKA-201ENST00000331433 SKILP12757 684 aa17.05■□□□□ 0.32
CLCNKA-201ENST00000331433 TPM4P67936 248 aa17.05■□□□□ 0.32
CLCNKA-201ENST00000331433 MDM2Q00987 491 aaPredicted RBP17.05■□□□□ 0.32
CLCNKA-201ENST00000331433 SBK1Q52WX2 424 aa17.05■□□□□ 0.32
CLCNKA-201ENST00000331433 GRAMD1CQ8IYS0 662 aa17.05■□□□□ 0.32
CLCNKA-201ENST00000331433 CTCFLQ8NI51 663 aaPredicted RBP17.05■□□□□ 0.32
CLCNKA-201ENST00000331433 SH3RF3Q8TEJ3 882 aaPredicted RBP17.05■□□□□ 0.32
CLCNKA-201ENST00000331433 CSRNP2Q9H175 543 aa17.05■□□□□ 0.32
CLCNKA-201ENST00000331433 SERTAD1Q9UHV2 236 aa17.05■□□□□ 0.32
CLCNKA-201ENST00000331433 SRPRBQ9Y5M8 271 aaKnown RBP17.05■□□□□ 0.32
CLCNKA-201ENST00000331433 SPATA31A6Q5VVP1 1343 aa17.04■□□□□ 0.32
CLCNKA-201ENST00000331433 IKBKBO14920 756 aa17.04■□□□□ 0.32
CLCNKA-201ENST00000331433 BMP6P22004 513 aa17.04■□□□□ 0.32
CLCNKA-201ENST00000331433 MEX3CQ5U5Q3 659 aaKnown RBP17.04■□□□□ 0.32
CLCNKA-201ENST00000331433 PRR5LQ6MZQ0 368 aa17.04■□□□□ 0.32
CLCNKA-201ENST00000331433 DYNLL2Q96FJ2 89 aa17.04■□□□□ 0.32
CLCNKA-201ENST00000331433 CEP131Q9UPN4 1083 aa17.04■□□□□ 0.32
CLCNKA-201ENST00000331433 LEMD3Q9Y2U8 911 aa17.04■□□□□ 0.32
CLCNKA-201ENST00000331433 XDHP47989 1333 aa17.04■□□□□ 0.32
CLCNKA-201ENST00000331433 TRIM75PA6NK02 468 aa17.04■□□□□ 0.32
CLCNKA-201ENST00000331433 PRR29P0C7W0 189 aa17.04■□□□□ 0.32
CLCNKA-201ENST00000331433 VEGFAP15692 232 aaPredicted RBP17.04■□□□□ 0.32
CLCNKA-201ENST00000331433 USP5P45974 858 aa17.04■□□□□ 0.32
CLCNKA-201ENST00000331433 CCZ1BP86790 482 aa17.04■□□□□ 0.32
CLCNKA-201ENST00000331433 CCZ1P86791 482 aaPredicted RBP17.04■□□□□ 0.32
CLCNKA-201ENST00000331433 NPY5RQ15761 445 aa17.04■□□□□ 0.32
CLCNKA-201ENST00000331433 RCSD1Q6JBY9 416 aa17.04■□□□□ 0.32
CLCNKA-201ENST00000331433 RRP9O43818 475 aaKnown RBP17.03■□□□□ 0.32
CLCNKA-201ENST00000331433 NEMFO60524 1076 aa17.03■□□□□ 0.32
CLCNKA-201ENST00000331433 POSTNQ15063 836 aa17.03■□□□□ 0.32
CLCNKA-201ENST00000331433 TMC6Q7Z403 805 aa17.03■□□□□ 0.32
CLCNKA-201ENST00000331433 WDR66Q8TBY9 1149 aa17.03■□□□□ 0.32
CLCNKA-201ENST00000331433 MKRN1Q9UHC7 482 aaKnown RBP17.03■□□□□ 0.32
CLCNKA-201ENST00000331433 USP27XA6NNY8 438 aa17.03■□□□□ 0.32
CLCNKA-201ENST00000331433 FANCCQ00597 558 aa17.03■□□□□ 0.32
CLCNKA-201ENST00000331433 MYL5Q02045 173 aa17.03■□□□□ 0.32
CLCNKA-201ENST00000331433 ZNF579Q8NAF0 562 aaKnown RBP17.03■□□□□ 0.32
CLCNKA-201ENST00000331433 GPSM2P81274 684 aa17.02■□□□□ 0.32
CLCNKA-201ENST00000331433 TFAP4Q01664 338 aa17.02■□□□□ 0.32
CLCNKA-201ENST00000331433 TPD52L1Q16890 204 aaPredicted RBP17.02■□□□□ 0.32
CLCNKA-201ENST00000331433 C12orf60Q5U649 245 aa17.02■□□□□ 0.32
CLCNKA-201ENST00000331433 OLFM4Q6UX06 510 aa17.02■□□□□ 0.32
CLCNKA-201ENST00000331433 SEPT12Q8IYM1 358 aa17.02■□□□□ 0.32
CLCNKA-201ENST00000331433 RPGRQ92834 1020 aaKnown RBP17.02■□□□□ 0.32
CLCNKA-201ENST00000331433 ZNF827Q17R98 1081 aa17.02■□□□□ 0.31
CLCNKA-201ENST00000331433 ZNF804AQ7Z570 1209 aa17.02■□□□□ 0.31
CLCNKA-201ENST00000331433 TNFRSF25Q93038 417 aa17.02■□□□□ 0.31
CLCNKA-201ENST00000331433 OSBPL5Q9H0X9 879 aaPredicted RBP17.02■□□□□ 0.31
CLCNKA-201ENST00000331433 BRMS1Q9HCU9 246 aa17.02■□□□□ 0.31
CLCNKA-201ENST00000331433 MAN1B1Q9UKM7 699 aa17.02■□□□□ 0.31
CLCNKA-201ENST00000331433 AFF2P51816 1311 aa17.01■□□□□ 0.31
CLCNKA-201ENST00000331433 RIOK3O14730 519 aaKnown RBP17.01■□□□□ 0.31
CLCNKA-201ENST00000331433 ACTN4O43707 911 aaKnown RBP17.01■□□□□ 0.31
CLCNKA-201ENST00000331433 ZNF174Q15697 407 aa17.01■□□□□ 0.31
CLCNKA-201ENST00000331433 EPSTI1Q96J88 318 aa17.01■□□□□ 0.31
CLCNKA-201ENST00000331433 IL17RBQ9NRM6 502 aa17.01■□□□□ 0.31
CLCNKA-201ENST00000331433 ADAMTS3O15072 1205 aa17.01■□□□□ 0.31
CLCNKA-201ENST00000331433 UFL1O94874 794 aa17.01■□□□□ 0.31
CLCNKA-201ENST00000331433 SCG2P13521 617 aa17.01■□□□□ 0.31
CLCNKA-201ENST00000331433 GSDMDP57764 484 aa17.01■□□□□ 0.31
CLCNKA-201ENST00000331433 TGFBRAP1Q8WUH2 860 aa17.01■□□□□ 0.31
CLCNKA-201ENST00000331433 DPF2Q92785 391 aa17.01■□□□□ 0.31
CLCNKA-201ENST00000331433 IMPACTQ9P2X3 320 aa17.01■□□□□ 0.31
CLCNKA-201ENST00000331433 HOOK1Q9UJC3 728 aaKnown RBP17.01■□□□□ 0.31
CLCNKA-201ENST00000331433 A0A087X0B3 334 aa17■□□□□ 0.31
CLCNKA-201ENST00000331433 TNNT1P13805 278 aa17■□□□□ 0.31
CLCNKA-201ENST00000331433 GYS1P13807 737 aa17■□□□□ 0.31
CLCNKA-201ENST00000331433 GTF2F1P35269 517 aaKnown RBP eCLIP17■□□□□ 0.31
CLCNKA-201ENST00000331433 TMED8Q6PL24 325 aaPredicted RBP17■□□□□ 0.31
CLCNKA-201ENST00000331433 ELOA2Q8IYF1 753 aaPredicted RBP17■□□□□ 0.31
CLCNKA-201ENST00000331433 SLC44A5Q8NCS7 719 aa17■□□□□ 0.31
CLCNKA-201ENST00000331433 KAT14Q9H8E8 782 aa17■□□□□ 0.31
CLCNKA-201ENST00000331433 FANCLQ9NW38 375 aa17■□□□□ 0.31
CLCNKA-201ENST00000331433 USP17L3A6NCW0 530 aa16.99■□□□□ 0.31
CLCNKA-201ENST00000331433 USP17L4A6NCW7 530 aa16.99■□□□□ 0.31
CLCNKA-201ENST00000331433 HSP90AA4PQ58FG1 418 aa16.99■□□□□ 0.31
CLCNKA-201ENST00000331433 ARMCX5Q6P1M9 558 aa16.99■□□□□ 0.31
CLCNKA-201ENST00000331433 USP17L1Q7RTZ2 530 aa16.99■□□□□ 0.31
CLCNKA-201ENST00000331433 MAPKAPK5Q8IW41 473 aa16.99■□□□□ 0.31
CLCNKA-201ENST00000331433 DHX58Q96C10 678 aa16.99■□□□□ 0.31
CLCNKA-201ENST00000331433 SAP30BPQ9UHR5 308 aaKnown RBP16.99■□□□□ 0.31
CLCNKA-201ENST00000331433 SERPINC1P01008 464 aa16.99■□□□□ 0.31
CLCNKA-201ENST00000331433 NLRP5P59047 1200 aa16.99■□□□□ 0.31
CLCNKA-201ENST00000331433 SMARCE1Q969G3 411 aa16.99■□□□□ 0.31
CLCNKA-201ENST00000331433 BCL11BQ9C0K0 894 aaPredicted RBP16.99■□□□□ 0.31
CLCNKA-201ENST00000331433 MKNK2Q9HBH9 465 aa16.99■□□□□ 0.31
CLCNKA-201ENST00000331433 ZBTB22O15209 634 aa16.98■□□□□ 0.31
CLCNKA-201ENST00000331433 BAG3O95817 575 aa16.98■□□□□ 0.31
CLCNKA-201ENST00000331433 SERPINB2P05120 415 aa16.98■□□□□ 0.31
CLCNKA-201ENST00000331433 ADRA2BP18089 450 aa16.98■□□□□ 0.31
CLCNKA-201ENST00000331433 PLCD1P51178 756 aa16.98■□□□□ 0.31
CLCNKA-201ENST00000331433 UBASH3AP57075 661 aa16.98■□□□□ 0.31
CLCNKA-201ENST00000331433 PTPN21Q16825 1174 aa16.98■□□□□ 0.31
CLCNKA-201ENST00000331433 PFKFB3Q16875 520 aaPredicted RBP16.98■□□□□ 0.31
CLCNKA-201ENST00000331433 TTC38Q5R3I4 469 aa16.98■□□□□ 0.31
CLCNKA-201ENST00000331433 PIK3AP1Q6ZUJ8 805 aa16.98■□□□□ 0.31
CLCNKA-201ENST00000331433 STAG2Q8N3U4 1231 aa16.98■□□□□ 0.31
CLCNKA-201ENST00000331433 PNMA1Q8ND90 353 aa16.98■□□□□ 0.31
CLCNKA-201ENST00000331433 SYMPKQ92797 1274 aaKnown RBP16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms