RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 CLASRPQ8N2M8 674 aaKnown RBP13.34□□□□□ -0.27
SHMT2-201ENST00000328923 TMTC2Q8N394 836 aa13.34□□□□□ -0.27
SHMT2-201ENST00000328923 BPIFA3Q9BQP9 254 aa13.34□□□□□ -0.27
SHMT2-201ENST00000328923 RCOR1Q9UKL0 485 aa13.34□□□□□ -0.27
SHMT2-201ENST00000328923 ERICH2A1L162 156 aa13.33□□□□□ -0.28
SHMT2-201ENST00000328923 LINGO3P0C6S8 592 aa13.33□□□□□ -0.28
SHMT2-201ENST00000328923 TOB2Q14106 344 aaPredicted RBP13.33□□□□□ -0.28
SHMT2-201ENST00000328923 NCAPHQ15003 741 aa13.33□□□□□ -0.28
SHMT2-201ENST00000328923 GNPTABQ3T906 1256 aa13.33□□□□□ -0.28
SHMT2-201ENST00000328923 GSPT2Q8IYD1 628 aaKnown RBP13.33□□□□□ -0.28
SHMT2-201ENST00000328923 NUP58Q9BVL2 599 aa13.33□□□□□ -0.28
SHMT2-201ENST00000328923 PAPOLBQ9NRJ5 636 aaKnown RBP13.33□□□□□ -0.28
SHMT2-201ENST00000328923 GNAT1P11488 350 aa13.33□□□□□ -0.28
SHMT2-201ENST00000328923 NAA35Q5VZE5 725 aa13.33□□□□□ -0.28
SHMT2-201ENST00000328923 IL17REQ8NFR9 667 aa13.33□□□□□ -0.28
SHMT2-201ENST00000328923 SMARCC2Q8TAQ2 1214 aa13.33□□□□□ -0.28
SHMT2-201ENST00000328923 POLD4Q9HCU8 107 aa13.33□□□□□ -0.28
SHMT2-201ENST00000328923 FANCLQ9NW38 375 aa13.33□□□□□ -0.28
SHMT2-201ENST00000328923 CORO1CQ9ULV4 474 aaPredicted RBP13.33□□□□□ -0.28
SHMT2-201ENST00000328923 NHSL1Q5SYE7 1610 aa13.32□□□□□ -0.28
SHMT2-201ENST00000328923 MED23Q9ULK4 1368 aa13.32□□□□□ -0.28
SHMT2-201ENST00000328923 BUB1BO60566 1050 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-201ENST00000328923 RNF8O76064 485 aa13.32□□□□□ -0.28
SHMT2-201ENST00000328923 UPP2O95045 317 aa13.32□□□□□ -0.28
SHMT2-201ENST00000328923 TOP1P11387 765 aaKnown RBP13.32□□□□□ -0.28
SHMT2-201ENST00000328923 SPRED3Q2MJR0 410 aa13.32□□□□□ -0.28
SHMT2-201ENST00000328923 CCDC178Q5BJE1 867 aa13.32□□□□□ -0.28
SHMT2-201ENST00000328923 CCDC73Q6ZRK6 1079 aa13.32□□□□□ -0.28
SHMT2-201ENST00000328923 BRINP3Q76B58 766 aa13.32□□□□□ -0.28
SHMT2-201ENST00000328923 KIAA0825Q8IV33 1275 aa13.32□□□□□ -0.28
SHMT2-201ENST00000328923 TRIM42Q8IWZ5 723 aa13.32□□□□□ -0.28
SHMT2-201ENST00000328923 TRIM58Q8NG06 486 aa13.32□□□□□ -0.28
SHMT2-201ENST00000328923 ACSBG1Q96GR2 724 aa13.32□□□□□ -0.28
SHMT2-201ENST00000328923 TSPAN18Q96SJ8 248 aa13.32□□□□□ -0.28
SHMT2-201ENST00000328923 OSBPL9Q96SU4 736 aa13.32□□□□□ -0.28
SHMT2-201ENST00000328923 FTOQ9C0B1 505 aaKnown RBP eCLIP13.32□□□□□ -0.28
SHMT2-201ENST00000328923 RBM47A0AV96 593 aaKnown RBP13.32□□□□□ -0.28
SHMT2-201ENST00000328923 A1BGP04217 495 aa13.32□□□□□ -0.28
SHMT2-201ENST00000328923 UBASH3AP57075 661 aa13.32□□□□□ -0.28
SHMT2-201ENST00000328923 FAM160A1Q05DH4 1040 aa13.32□□□□□ -0.28
SHMT2-201ENST00000328923 KRT32Q14532 448 aa13.32□□□□□ -0.28
SHMT2-201ENST00000328923 MTF1Q14872 753 aa13.32□□□□□ -0.28
SHMT2-201ENST00000328923 LRRC59Q96AG4 307 aaKnown RBP13.32□□□□□ -0.28
SHMT2-201ENST00000328923 ABCC6O95255 1503 aa13.31□□□□□ -0.28
SHMT2-201ENST00000328923 GOLGA6L7A0A1B0GV03 622 aa13.31□□□□□ -0.28
SHMT2-201ENST00000328923 ATP5JP18859 108 aa13.31□□□□□ -0.28
SHMT2-201ENST00000328923 ROR2Q01974 943 aaKnown RBP13.31□□□□□ -0.28
SHMT2-201ENST00000328923 SETDB1Q15047 1291 aa13.31□□□□□ -0.28
SHMT2-201ENST00000328923 CFAP100Q494V2 611 aa13.31□□□□□ -0.28
SHMT2-201ENST00000328923 RRP12Q5JTH9 1297 aaKnown RBP13.31□□□□□ -0.28
SHMT2-201ENST00000328923 NAA16Q6N069 864 aaPredicted RBP13.31□□□□□ -0.28
SHMT2-201ENST00000328923 PDILTQ8N807 584 aa13.31□□□□□ -0.28
SHMT2-201ENST00000328923 ENGASEQ8NFI3 743 aa13.31□□□□□ -0.28
SHMT2-201ENST00000328923 MMADHCQ9H3L0 296 aaPredicted RBP13.31□□□□□ -0.28
SHMT2-201ENST00000328923 A0A1B0GVL5 298 aa13.31□□□□□ -0.28
SHMT2-201ENST00000328923 GOLGA6BA6NDN3 693 aa13.31□□□□□ -0.28
SHMT2-201ENST00000328923 ZMYND10O75800 440 aa13.31□□□□□ -0.28
SHMT2-201ENST00000328923 TUBBP07437 444 aa13.31□□□□□ -0.28
SHMT2-201ENST00000328923 ZNF569Q5MCW4 686 aa13.31□□□□□ -0.28
SHMT2-201ENST00000328923 Q6ZUG5 572 aa13.31□□□□□ -0.28
SHMT2-201ENST00000328923 VSTM4Q8IW00 320 aa13.31□□□□□ -0.28
SHMT2-201ENST00000328923 PROCA1Q8NCQ7 364 aaPredicted RBP13.31□□□□□ -0.28
SHMT2-201ENST00000328923 BRF1Q92994 677 aa13.31□□□□□ -0.28
SHMT2-201ENST00000328923 ALS2CR12Q96Q35 445 aa13.31□□□□□ -0.28
SHMT2-201ENST00000328923 LLPHQ9BRT6 129 aaKnown RBP13.31□□□□□ -0.28
SHMT2-201ENST00000328923 AHDC1Q5TGY3 1603 aaPredicted RBP13.3□□□□□ -0.28
SHMT2-201ENST00000328923 SERPINC1P01008 464 aa13.3□□□□□ -0.28
SHMT2-201ENST00000328923 PAX3P23760 479 aa13.3□□□□□ -0.28
SHMT2-201ENST00000328923 ADD1P35611 737 aaKnown RBP13.3□□□□□ -0.28
SHMT2-201ENST00000328923 GCLCP48506 637 aaPredicted RBP13.3□□□□□ -0.28
SHMT2-201ENST00000328923 TUBB4BP68371 445 aa13.3□□□□□ -0.28
SHMT2-201ENST00000328923 ZNF473Q8WTR7 871 aaKnown RBP13.3□□□□□ -0.28
SHMT2-201ENST00000328923 CCDC47Q96A33 483 aaKnown RBP13.3□□□□□ -0.28
SHMT2-201ENST00000328923 BICD1Q96G01 975 aa13.3□□□□□ -0.28
SHMT2-201ENST00000328923 RBM17Q96I25 401 aaKnown RBP13.3□□□□□ -0.28
SHMT2-201ENST00000328923 ZNF570Q96NI8 536 aa13.3□□□□□ -0.28
SHMT2-201ENST00000328923 PAGR1Q9BTK6 254 aa13.3□□□□□ -0.28
SHMT2-201ENST00000328923 HSD3B7Q9H2F3 369 aa13.3□□□□□ -0.28
SHMT2-201ENST00000328923 NCAPD2Q15021 1401 aa13.3□□□□□ -0.28
SHMT2-201ENST00000328923 H3BQV1 296 aa13.3□□□□□ -0.28
SHMT2-201ENST00000328923 ALDH1B1P30837 517 aa13.3□□□□□ -0.28
SHMT2-201ENST00000328923 ADKP55263 362 aaKnown RBP13.3□□□□□ -0.28
SHMT2-201ENST00000328923 IFFO2Q5TF58 517 aa13.3□□□□□ -0.28
SHMT2-201ENST00000328923 RBM41Q96IZ5 413 aaKnown RBP13.3□□□□□ -0.28
SHMT2-201ENST00000328923 EBF2Q9HAK2 575 aa13.3□□□□□ -0.28
SHMT2-201ENST00000328923 MYO1AQ9UBC5 1043 aa13.3□□□□□ -0.28
SHMT2-201ENST00000328923 HOOK1Q9UJC3 728 aaKnown RBP13.3□□□□□ -0.28
SHMT2-201ENST00000328923 C15orf41Q9Y2V0 281 aa13.3□□□□□ -0.28
SHMT2-201ENST00000328923 RGPD5Q99666 1765 aa13.29□□□□□ -0.28
SHMT2-201ENST00000328923 LRP6O75581 1613 aa13.29□□□□□ -0.28
SHMT2-201ENST00000328923 DNM1LO00429 736 aa13.29□□□□□ -0.28
SHMT2-201ENST00000328923 ATP1A2P50993 1020 aa13.29□□□□□ -0.28
SHMT2-201ENST00000328923 HDLBPQ00341 1268 aaKnown RBP13.29□□□□□ -0.28
SHMT2-201ENST00000328923 TMEM62Q0P6H9 643 aa13.29□□□□□ -0.28
SHMT2-201ENST00000328923 NMIQ13287 307 aaPredicted RBP13.29□□□□□ -0.28
SHMT2-201ENST00000328923 TAF7Q15545 349 aaPredicted RBP13.29□□□□□ -0.28
SHMT2-201ENST00000328923 AKNAD1Q5T1N1 836 aa13.29□□□□□ -0.28
SHMT2-201ENST00000328923 NCAPH2Q6IBW4 605 aa13.29□□□□□ -0.28
SHMT2-201ENST00000328923 DDX17Q92841 729 aaKnown RBP13.29□□□□□ -0.28
SHMT2-201ENST00000328923 MKL1Q969V6 931 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms