RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 PDE4DQ08499 809 aa8.73□□□□□ -1.01
CIITA-201ENST00000324288 C4orf50Q6ZRC1 276 aa8.73□□□□□ -1.01
CIITA-201ENST00000324288 MYL10Q9BUA6 226 aa8.73□□□□□ -1.01
CIITA-201ENST00000324288 TEX13AQ9BXU3 409 aaPredicted RBP8.73□□□□□ -1.01
CIITA-201ENST00000324288 NESP48681 1621 aa8.73□□□□□ -1.01
CIITA-201ENST00000324288 TMTC2Q8N394 836 aa8.73□□□□□ -1.01
CIITA-201ENST00000324288 ZNF215Q9UL58 517 aaPredicted RBP8.73□□□□□ -1.01
CIITA-201ENST00000324288 WDR46O15213 610 aaKnown RBP8.73□□□□□ -1.01
CIITA-201ENST00000324288 GNA11P29992 359 aa8.73□□□□□ -1.01
CIITA-201ENST00000324288 STX2P32856 288 aa8.73□□□□□ -1.01
CIITA-201ENST00000324288 PHEXP78562 749 aa8.73□□□□□ -1.01
CIITA-201ENST00000324288 TSTA3Q13630 321 aaPredicted RBP8.73□□□□□ -1.01
CIITA-201ENST00000324288 EFCC1Q9HA90 598 aa8.73□□□□□ -1.01
CIITA-201ENST00000324288 LMBRD1Q9NUN5 540 aa8.73□□□□□ -1.01
CIITA-201ENST00000324288 IL1RL1Q01638 556 aa8.73□□□□□ -1.01
CIITA-201ENST00000324288 SFMBT2Q5VUG0 894 aa8.73□□□□□ -1.01
CIITA-201ENST00000324288 KCTD16Q68DU8 428 aa8.73□□□□□ -1.01
CIITA-201ENST00000324288 DCUN1D2Q6PH85 259 aa8.73□□□□□ -1.01
CIITA-201ENST00000324288 TCP11Q8WWU5 503 aa8.73□□□□□ -1.01
CIITA-201ENST00000324288 N4BP2L2Q92802 583 aaPredicted RBP8.73□□□□□ -1.01
CIITA-201ENST00000324288 MSH6P52701 1360 aa8.73□□□□□ -1.01
CIITA-201ENST00000324288 LRRD1A4D1F6 860 aa8.73□□□□□ -1.01
CIITA-201ENST00000324288 ANKRD20A3Q5VUR7 823 aa8.73□□□□□ -1.01
CIITA-201ENST00000324288 PARP3Q9Y6F1 533 aa8.73□□□□□ -1.01
CIITA-201ENST00000324288 TROQ12816 1431 aaPredicted RBP8.73□□□□□ -1.01
CIITA-201ENST00000324288 ESYT2A0FGR8 921 aa8.73□□□□□ -1.01
CIITA-201ENST00000324288 B4DLN1 442 aa8.73□□□□□ -1.01
CIITA-201ENST00000324288 IRS4O14654 1257 aaPredicted RBP8.73□□□□□ -1.01
CIITA-201ENST00000324288 STMN1P16949 149 aa8.73□□□□□ -1.01
CIITA-201ENST00000324288 SLC8A1P32418 973 aa8.73□□□□□ -1.01
CIITA-201ENST00000324288 IFNAR2P48551 515 aa8.73□□□□□ -1.01
CIITA-201ENST00000324288 MRPL12P52815 198 aaKnown RBP8.73□□□□□ -1.01
CIITA-201ENST00000324288 MRPS25P82663 173 aaKnown RBP8.73□□□□□ -1.01
CIITA-201ENST00000324288 FAM71BQ8TC56 605 aa8.73□□□□□ -1.01
CIITA-201ENST00000324288 PPP4R1Q8TF05 950 aa8.73□□□□□ -1.01
CIITA-201ENST00000324288 POLKQ9UBT6 870 aa8.73□□□□□ -1.01
CIITA-201ENST00000324288 TTF2Q9UNY4 1162 aaKnown RBP8.73□□□□□ -1.01
CIITA-201ENST00000324288 RANBP1P43487 201 aa8.73□□□□□ -1.01
CIITA-201ENST00000324288 DBN1Q16643 649 aa8.73□□□□□ -1.01
CIITA-201ENST00000324288 DZIP3Q86Y13 1208 aaKnown RBP8.73□□□□□ -1.01
CIITA-201ENST00000324288 CCDC89Q8N998 374 aa8.73□□□□□ -1.01
CIITA-201ENST00000324288 RNF40O75150 1001 aa8.73□□□□□ -1.01
CIITA-201ENST00000324288 FAM133BQ5BKY9 247 aaKnown RBP8.73□□□□□ -1.01
CIITA-201ENST00000324288 DHX32Q7L7V1 743 aaKnown RBP8.73□□□□□ -1.01
CIITA-201ENST00000324288 AFAP1L2Q8N4X5 818 aa8.73□□□□□ -1.01
CIITA-201ENST00000324288 JPH2Q9BR39 696 aaPredicted RBP8.73□□□□□ -1.01
CIITA-201ENST00000324288 ARMT1Q9H993 441 aa8.73□□□□□ -1.01
CIITA-201ENST00000324288 PICK1Q9NRD5 415 aa8.73□□□□□ -1.01
CIITA-201ENST00000324288 LIN9Q5TKA1 542 aa8.72□□□□□ -1.01
CIITA-201ENST00000324288 CDC37L1Q7L3B6 337 aa8.72□□□□□ -1.01
CIITA-201ENST00000324288 NELFCDQ8IXH7 590 aa8.72□□□□□ -1.01
CIITA-201ENST00000324288 UFL1O94874 794 aa8.72□□□□□ -1.01
CIITA-201ENST00000324288 SMTNP53814 917 aa8.72□□□□□ -1.01
CIITA-201ENST00000324288 ACEP12821 1306 aa8.72□□□□□ -1.01
CIITA-201ENST00000324288 ARHGAP30Q7Z6I6 1101 aaPredicted RBP8.72□□□□□ -1.01
CIITA-201ENST00000324288 G3BP2Q9UN86 482 aaKnown RBP8.72□□□□□ -1.01
CIITA-201ENST00000324288 EFCAB5A4FU69 1503 aa8.72□□□□□ -1.01
CIITA-201ENST00000324288 NINQ8N4C6 2090 aa8.72□□□□□ -1.01
CIITA-201ENST00000324288 ACTN4O43707 911 aaKnown RBP8.72□□□□□ -1.01
CIITA-201ENST00000324288 RPL13P26373 211 aaKnown RBP8.72□□□□□ -1.01
CIITA-201ENST00000324288 TXKP42681 527 aa8.72□□□□□ -1.01
CIITA-201ENST00000324288 IFRD2Q12894 506 aaPredicted RBP8.72□□□□□ -1.01
CIITA-201ENST00000324288 SPOUT1Q5T280 376 aaKnown RBP8.72□□□□□ -1.01
CIITA-201ENST00000324288 NFATC2IPQ8NCF5 419 aa8.72□□□□□ -1.01
CIITA-201ENST00000324288 KLHDC4Q8TBB5 520 aa8.72□□□□□ -1.01
CIITA-201ENST00000324288 PPME1Q9Y570 386 aa8.72□□□□□ -1.01
CIITA-201ENST00000324288 CTDSPL2Q05D32 466 aa8.72□□□□□ -1.01
CIITA-201ENST00000324288 KRT12Q99456 494 aa8.72□□□□□ -1.01
CIITA-201ENST00000324288 KRIT1O00522 736 aa8.72□□□□□ -1.01
CIITA-201ENST00000324288 ZNF202O95125 648 aa8.72□□□□□ -1.01
CIITA-201ENST00000324288 IL15P40933 162 aaPredicted RBP8.72□□□□□ -1.01
CIITA-201ENST00000324288 SLC8A3P57103 927 aa8.72□□□□□ -1.01
CIITA-201ENST00000324288 ATP8B2P98198 1209 aa8.72□□□□□ -1.01
CIITA-201ENST00000324288 PLEKHM2Q8IWE5 1019 aa8.72□□□□□ -1.01
CIITA-201ENST00000324288 PHKBQ93100 1093 aa8.72□□□□□ -1.01
CIITA-201ENST00000324288 ASCC3Q8N3C0 2202 aaKnown RBP8.72□□□□□ -1.01
CIITA-201ENST00000324288 PPFIA2O75334 1257 aa8.72□□□□□ -1.01
CIITA-201ENST00000324288 ABL1P00519 1130 aa8.72□□□□□ -1.01
CIITA-201ENST00000324288 ZKSCAN8Q15776 578 aaPredicted RBP8.72□□□□□ -1.01
CIITA-201ENST00000324288 LONRF2Q1L5Z9 754 aa8.72□□□□□ -1.01
CIITA-201ENST00000324288 NPHP3Q7Z494 1330 aa8.72□□□□□ -1.01
CIITA-201ENST00000324288 CUTAO60888 179 aa8.72□□□□□ -1.01
CIITA-201ENST00000324288 BRD3Q15059 726 aa8.72□□□□□ -1.01
CIITA-201ENST00000324288 STRN3Q13033 797 aa8.72□□□□□ -1.01
CIITA-201ENST00000324288 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.72□□□□□ -1.01
CIITA-201ENST00000324288 DYMQ7RTS9 669 aa8.72□□□□□ -1.01
CIITA-201ENST00000324288 ZCRB1Q8TBF4 217 aaKnown RBP8.72□□□□□ -1.01
CIITA-201ENST00000324288 SPATS2LQ9NUQ6 558 aaKnown RBP8.72□□□□□ -1.01
CIITA-201ENST00000324288 TCP10Q12799 353 aa8.71□□□□□ -1.01
CIITA-201ENST00000324288 SEPT8Q92599 483 aa8.71□□□□□ -1.01
CIITA-201ENST00000324288 CSRNP2Q9H175 543 aa8.71□□□□□ -1.01
CIITA-201ENST00000324288 SYNJ2BP-COX16A0A087WUM0 186 aa8.71□□□□□ -1.01
CIITA-201ENST00000324288 PPFIA4O75335 1185 aa8.71□□□□□ -1.01
CIITA-201ENST00000324288 RNF169Q8NCN4 708 aa8.71□□□□□ -1.01
CIITA-201ENST00000324288 CCDC197Q8NCU1 140 aa8.71□□□□□ -1.01
CIITA-201ENST00000324288 THOC1Q96FV9 657 aaKnown RBP8.71□□□□□ -1.01
CIITA-201ENST00000324288 CAPS2Q9BXY5 557 aa8.71□□□□□ -1.01
CIITA-201ENST00000324288 COX16Q9P0S2 106 aa8.71□□□□□ -1.01
CIITA-201ENST00000324288 KCNK3O14649 394 aa8.71□□□□□ -1.01
CIITA-201ENST00000324288 CD19P15391 556 aa8.71□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms