RNA–Protein interactions for RNA: ENST00000315962.8

TRIM55-202, Transcript of tripartite motif containing 55, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM55, Length 2,914 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-202ENST00000315962 GPKOWQ92917 476 aaPredicted RBP eCLIP8.76□□□□□ -1.01
TRIM55-202ENST00000315962 SDF4Q9BRK5 362 aa8.76□□□□□ -1.01
TRIM55-202ENST00000315962 RREB1Q92766 1687 aa8.76□□□□□ -1.01
TRIM55-202ENST00000315962 BRWD3Q6RI45 1802 aa8.76□□□□□ -1.01
TRIM55-202ENST00000315962 WNT7AO00755 349 aa8.76□□□□□ -1.01
TRIM55-202ENST00000315962 GTF2F1P35269 517 aaKnown RBP eCLIP8.76□□□□□ -1.01
TRIM55-202ENST00000315962 AKAP17AQ02040 695 aaKnown RBP8.76□□□□□ -1.01
TRIM55-202ENST00000315962 PDE4BQ07343 736 aa8.76□□□□□ -1.01
TRIM55-202ENST00000315962 TROAPQ12815 778 aa8.76□□□□□ -1.01
TRIM55-202ENST00000315962 NFIAQ12857 509 aa8.76□□□□□ -1.01
TRIM55-202ENST00000315962 C12orf60Q5U649 245 aa8.76□□□□□ -1.01
TRIM55-202ENST00000315962 ZNF444Q8N0Y2 327 aaPredicted RBP8.76□□□□□ -1.01
TRIM55-202ENST00000315962 SRBD1Q8N5C6 995 aaKnown RBP8.76□□□□□ -1.01
TRIM55-202ENST00000315962 PDILTQ8N807 584 aa8.76□□□□□ -1.01
TRIM55-202ENST00000315962 LINC00301Q8NCQ3 95 aa8.76□□□□□ -1.01
TRIM55-202ENST00000315962 TMX4Q9H1E5 349 aaPredicted RBP8.76□□□□□ -1.01
TRIM55-202ENST00000315962 ATP8A2Q9NTI2 1148 aa8.76□□□□□ -1.01
TRIM55-202ENST00000315962 BAZ2AQ9UIF9 1905 aaKnown RBP8.75□□□□□ -1.01
TRIM55-202ENST00000315962 H0YIN7 160 aa8.75□□□□□ -1.01
TRIM55-202ENST00000315962 SPTLC2O15270 562 aa8.75□□□□□ -1.01
TRIM55-202ENST00000315962 CDKL5O76039 1030 aa8.75□□□□□ -1.01
TRIM55-202ENST00000315962 HOXA10P31260 410 aaPredicted RBP8.75□□□□□ -1.01
TRIM55-202ENST00000315962 HOMER1Q86YM7 354 aa8.75□□□□□ -1.01
TRIM55-202ENST00000315962 RASGRP4Q8TDF6 673 aa8.75□□□□□ -1.01
TRIM55-202ENST00000315962 ZNF396Q96N95 335 aaPredicted RBP8.75□□□□□ -1.01
TRIM55-202ENST00000315962 DDX4Q9NQI0 724 aaKnown RBP8.75□□□□□ -1.01
TRIM55-202ENST00000315962 RCOR1Q9UKL0 485 aa8.75□□□□□ -1.01
TRIM55-202ENST00000315962 BCORQ6W2J9 1755 aa8.75□□□□□ -1.01
TRIM55-202ENST00000315962 ERICH4A6NGS2 130 aa8.75□□□□□ -1.01
TRIM55-202ENST00000315962 ZBTB7AO95365 584 aa8.75□□□□□ -1.01
TRIM55-202ENST00000315962 FMNL1O95466 1100 aaPredicted RBP8.75□□□□□ -1.01
TRIM55-202ENST00000315962 SNW1Q13573 536 aaKnown RBP8.75□□□□□ -1.01
TRIM55-202ENST00000315962 SLC15A2Q16348 729 aa8.75□□□□□ -1.01
TRIM55-202ENST00000315962 ANO1Q5XXA6 986 aa8.75□□□□□ -1.01
TRIM55-202ENST00000315962 RCSD1Q6JBY9 416 aa8.75□□□□□ -1.01
TRIM55-202ENST00000315962 SP8Q8IXZ3 490 aa8.75□□□□□ -1.01
TRIM55-202ENST00000315962 CRAMP1Q96RY5 1269 aa8.75□□□□□ -1.01
TRIM55-202ENST00000315962 CGNQ9P2M7 1197 aaKnown RBP8.75□□□□□ -1.01
TRIM55-202ENST00000315962 DAGLAQ9Y4D2 1042 aa8.75□□□□□ -1.01
TRIM55-202ENST00000315962 PCDHB6Q9Y5E3 794 aa8.75□□□□□ -1.01
TRIM55-202ENST00000315962 SBF2Q86WG5 1849 aa8.75□□□□□ -1.01
TRIM55-202ENST00000315962 MROH7-TTC4A0A0A0MT08 1334 aa8.75□□□□□ -1.01
TRIM55-202ENST00000315962 C4AP0C0L4 1744 aa8.74□□□□□ -1.01
TRIM55-202ENST00000315962 IL1R1P14778 569 aa8.74□□□□□ -1.01
TRIM55-202ENST00000315962 NPR1P16066 1061 aa8.74□□□□□ -1.01
TRIM55-202ENST00000315962 IFNAR1P17181 557 aa8.74□□□□□ -1.01
TRIM55-202ENST00000315962 PDE6BP35913 854 aa8.74□□□□□ -1.01
TRIM55-202ENST00000315962 USP17L2Q6R6M4 530 aa8.74□□□□□ -1.01
TRIM55-202ENST00000315962 CCDC73Q6ZRK6 1079 aa8.74□□□□□ -1.01
TRIM55-202ENST00000315962 LRRN4CLQ8ND94 238 aa8.74□□□□□ -1.01
TRIM55-202ENST00000315962 CCDC112Q8NEF3 446 aa8.74□□□□□ -1.01
TRIM55-202ENST00000315962 TRERF1Q96PN7 1200 aa8.74□□□□□ -1.01
TRIM55-202ENST00000315962 UIMC1Q96RL1 719 aa8.74□□□□□ -1.01
TRIM55-202ENST00000315962 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.74□□□□□ -1.01
TRIM55-202ENST00000315962 MKRN1Q9UHC7 482 aaKnown RBP8.74□□□□□ -1.01
TRIM55-202ENST00000315962 ANAPC4Q9UJX5 808 aa8.74□□□□□ -1.01
TRIM55-202ENST00000315962 SCN7AQ01118 1682 aa8.74□□□□□ -1.01
TRIM55-202ENST00000315962 CENPFP49454 3210 aa8.74□□□□□ -1.01
TRIM55-202ENST00000315962 ELP1O95163 1332 aa8.74□□□□□ -1.01
TRIM55-202ENST00000315962 FLT1P17948 1338 aa8.74□□□□□ -1.01
TRIM55-202ENST00000315962 TOB1P50616 345 aaPredicted RBP8.74□□□□□ -1.01
TRIM55-202ENST00000315962 RHBDL3P58872 404 aa8.74□□□□□ -1.01
TRIM55-202ENST00000315962 USP49Q70CQ1 688 aa8.74□□□□□ -1.01
TRIM55-202ENST00000315962 ZSCAN29Q8IWY8 852 aaPredicted RBP8.74□□□□□ -1.01
TRIM55-202ENST00000315962 PNMA1Q8ND90 353 aa8.74□□□□□ -1.01
TRIM55-202ENST00000315962 MASTLQ96GX5 879 aa8.74□□□□□ -1.01
TRIM55-202ENST00000315962 UBA5Q9GZZ9 404 aa8.74□□□□□ -1.01
TRIM55-202ENST00000315962 TMX1Q9H3N1 280 aa8.74□□□□□ -1.01
TRIM55-202ENST00000315962 KAT14Q9H8E8 782 aa8.74□□□□□ -1.01
TRIM55-202ENST00000315962 USP40Q9NVE5 1235 aa8.74□□□□□ -1.01
TRIM55-202ENST00000315962 ARPP21Q9UBL0 812 aaPredicted RBP8.74□□□□□ -1.01
TRIM55-202ENST00000315962 ZNF215Q9UL58 517 aaPredicted RBP8.74□□□□□ -1.01
TRIM55-202ENST00000315962 ATF5Q9Y2D1 282 aaPredicted RBP8.74□□□□□ -1.01
TRIM55-202ENST00000315962 MYH13Q9UKX3 1938 aa8.74□□□□□ -1.01
TRIM55-202ENST00000315962 GOLGA6L19H0YKK7 550 aa8.74□□□□□ -1.01
TRIM55-202ENST00000315962 MPHOSPH10O00566 681 aaKnown RBP8.74□□□□□ -1.01
TRIM55-202ENST00000315962 KINO60870 393 aaKnown RBP8.74□□□□□ -1.01
TRIM55-202ENST00000315962 SLC3A2P08195 630 aaKnown RBP8.74□□□□□ -1.01
TRIM55-202ENST00000315962 CDC25AP30304 524 aa8.74□□□□□ -1.01
TRIM55-202ENST00000315962 CDK8P49336 464 aa8.74□□□□□ -1.01
TRIM55-202ENST00000315962 ELF2Q15723 593 aa8.74□□□□□ -1.01
TRIM55-202ENST00000315962 PKN1Q16512 942 aa8.74□□□□□ -1.01
TRIM55-202ENST00000315962 HSP90AA4PQ58FG1 418 aa8.74□□□□□ -1.01
TRIM55-202ENST00000315962 CTCFLQ8NI51 663 aaPredicted RBP8.74□□□□□ -1.01
TRIM55-202ENST00000315962 ANKRD7Q92527 254 aa8.74□□□□□ -1.01
TRIM55-202ENST00000315962 TAF1LQ8IZX4 1826 aa8.73□□□□□ -1.01
TRIM55-202ENST00000315962 FRMPD2Q68DX3 1309 aaPredicted RBP8.73□□□□□ -1.01
TRIM55-202ENST00000315962 WDR19Q8NEZ3 1342 aa8.73□□□□□ -1.01
TRIM55-202ENST00000315962 CACNA1SQ13698 1873 aa8.73□□□□□ -1.01
TRIM55-202ENST00000315962 RGL2O15211 777 aa8.73□□□□□ -1.01
TRIM55-202ENST00000315962 FOXN1O15353 648 aa8.73□□□□□ -1.01
TRIM55-202ENST00000315962 MMP1P03956 469 aa8.73□□□□□ -1.01
TRIM55-202ENST00000315962 ALDH1B1P30837 517 aa8.73□□□□□ -1.01
TRIM55-202ENST00000315962 GOLGA8FQ08AF8 430 aa8.73□□□□□ -1.01
TRIM55-202ENST00000315962 GOLGA8DPQ0D2H9 430 aa8.73□□□□□ -1.01
TRIM55-202ENST00000315962 NOSTRINQ8IVI9 506 aa8.73□□□□□ -1.01
TRIM55-202ENST00000315962 LRRC47Q8N1G4 583 aaKnown RBP8.73□□□□□ -1.01
TRIM55-202ENST00000315962 TMTC2Q8N394 836 aa8.73□□□□□ -1.01
TRIM55-202ENST00000315962 EYA3Q99504 573 aa8.73□□□□□ -1.01
TRIM55-202ENST00000315962 CLSTN2Q9H4D0 955 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms