RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 LDLRAD1Q5T700 205 aa21.4■■□□□ 1.02
HMGA1-201ENST00000311487 PAXIP1Q6ZW49 1069 aaPredicted RBP21.4■■□□□ 1.02
HMGA1-201ENST00000311487 SIAH1Q8IUQ4 282 aa21.4■■□□□ 1.02
HMGA1-201ENST00000311487 NEDD1Q8NHV4 660 aa21.4■■□□□ 1.02
HMGA1-201ENST00000311487 SLC10A4Q96EP9 437 aa21.4■■□□□ 1.02
HMGA1-201ENST00000311487 CCDC17Q96LX7 622 aa21.4■■□□□ 1.02
HMGA1-201ENST00000311487 CLIP2Q9UDT6 1046 aa21.4■■□□□ 1.02
HMGA1-201ENST00000311487 IFIT3O14879 490 aaKnown RBP21.39■■□□□ 1.02
HMGA1-201ENST00000311487 EEF2P13639 858 aaKnown RBP21.39■■□□□ 1.02
HMGA1-201ENST00000311487 MCM5P33992 734 aa21.39■■□□□ 1.02
HMGA1-201ENST00000311487 TMEM179Q6ZVK1 233 aa21.39■■□□□ 1.02
HMGA1-201ENST00000311487 RASGRP2Q7LDG7 609 aa21.39■■□□□ 1.02
HMGA1-201ENST00000311487 RAB11FIP4Q86YS3 637 aa21.39■■□□□ 1.02
HMGA1-201ENST00000311487 ZSCAN10Q96SZ4 725 aaPredicted RBP21.39■■□□□ 1.02
HMGA1-201ENST00000311487 UBAC1Q9BSL1 405 aa21.39■■□□□ 1.02
HMGA1-201ENST00000311487 TNKSO95271 1327 aa21.39■■□□□ 1.01
HMGA1-201ENST00000311487 A0A1W2PRG0 241 aa21.39■■□□□ 1.01
HMGA1-201ENST00000311487 ASNSP08243 561 aa21.39■■□□□ 1.01
HMGA1-201ENST00000311487 PCP11498 1178 aaKnown RBP21.39■■□□□ 1.01
HMGA1-201ENST00000311487 ICA1Q05084 483 aa21.39■■□□□ 1.01
HMGA1-201ENST00000311487 RUFY3Q7L099 469 aa21.39■■□□□ 1.01
HMGA1-201ENST00000311487 DHX32Q7L7V1 743 aaKnown RBP21.39■■□□□ 1.01
HMGA1-201ENST00000311487 LRRC47Q8N1G4 583 aaKnown RBP21.39■■□□□ 1.01
HMGA1-201ENST00000311487 ENAHQ8N8S7 591 aaPredicted RBP21.39■■□□□ 1.01
HMGA1-201ENST00000311487 OPTNQ96CV9 577 aa21.39■■□□□ 1.01
HMGA1-201ENST00000311487 ZSWIM6Q9HCJ5 1215 aa21.39■■□□□ 1.01
HMGA1-201ENST00000311487 RPS6KB1P23443 525 aa21.38■■□□□ 1.01
HMGA1-201ENST00000311487 PSMA5P28066 241 aa21.38■■□□□ 1.01
HMGA1-201ENST00000311487 NEK4P51957 841 aa21.38■■□□□ 1.01
HMGA1-201ENST00000311487 SPP2Q13103 211 aa21.38■■□□□ 1.01
HMGA1-201ENST00000311487 MTMR4Q9NYA4 1195 aa21.38■■□□□ 1.01
HMGA1-201ENST00000311487 CYP46A1Q9Y6A2 500 aa21.38■■□□□ 1.01
HMGA1-201ENST00000311487 ATAD5Q96QE3 1844 aa21.38■■□□□ 1.01
HMGA1-201ENST00000311487 GJA5P36382 358 aa21.37■■□□□ 1.01
HMGA1-201ENST00000311487 ZNF157P51786 506 aaPredicted RBP21.37■■□□□ 1.01
HMGA1-201ENST00000311487 ANAPC15P60006 121 aa21.37■■□□□ 1.01
HMGA1-201ENST00000311487 FGD1P98174 961 aa21.37■■□□□ 1.01
HMGA1-201ENST00000311487 EXOSC10Q01780 885 aaKnown RBP21.37■■□□□ 1.01
HMGA1-201ENST00000311487 TMEM67Q5HYA8 995 aa21.37■■□□□ 1.01
HMGA1-201ENST00000311487 Q6ZUG5 572 aa21.37■■□□□ 1.01
HMGA1-201ENST00000311487 IQCA1Q86XH1 822 aa21.37■■□□□ 1.01
HMGA1-201ENST00000311487 PAPPA2Q9BXP8 1791 aa21.37■■□□□ 1.01
HMGA1-201ENST00000311487 IRF6O14896 467 aa21.37■■□□□ 1.01
HMGA1-201ENST00000311487 APLP1P51693 650 aa21.37■■□□□ 1.01
HMGA1-201ENST00000311487 FKBP1BP68106 108 aa21.37■■□□□ 1.01
HMGA1-201ENST00000311487 SPICE1Q8N0Z3 855 aa21.37■■□□□ 1.01
HMGA1-201ENST00000311487 IGKV6D-41A0A0C4DH26 115 aa21.36■■□□□ 1.01
HMGA1-201ENST00000311487 USP17L5A8MUK1 530 aa21.36■■□□□ 1.01
HMGA1-201ENST00000311487 RCSD1Q6JBY9 416 aa21.36■■□□□ 1.01
HMGA1-201ENST00000311487 IGDCC4Q8TDY8 1250 aa21.36■■□□□ 1.01
HMGA1-201ENST00000311487 MYL10Q9BUA6 226 aa21.36■■□□□ 1.01
HMGA1-201ENST00000311487 KANSL2Q9H9L4 492 aa21.36■■□□□ 1.01
HMGA1-201ENST00000311487 PDRG1Q9NUG6 133 aa21.36■■□□□ 1.01
HMGA1-201ENST00000311487 NAP1L2Q9ULW6 460 aaPredicted RBP21.36■■□□□ 1.01
HMGA1-201ENST00000311487 TLL2Q9Y6L7 1015 aa21.36■■□□□ 1.01
HMGA1-201ENST00000311487 MTMR2Q13614 643 aa21.35■■□□□ 1.01
HMGA1-201ENST00000311487 NOL9Q5SY16 702 aaKnown RBP21.35■■□□□ 1.01
HMGA1-201ENST00000311487 DOCK1Q14185 1865 aa21.35■■□□□ 1.01
HMGA1-201ENST00000311487 RXRAP19793 462 aa21.35■■□□□ 1.01
HMGA1-201ENST00000311487 KIAA1755Q5JYT7 1200 aa21.35■■□□□ 1.01
HMGA1-201ENST00000311487 TMEM47Q9BQJ4 181 aa21.35■■□□□ 1.01
HMGA1-201ENST00000311487 TTLL1O95922 423 aa21.34■■□□□ 1.01
HMGA1-201ENST00000311487 IFIT1BQ5T764 474 aaKnown RBP21.34■■□□□ 1.01
HMGA1-201ENST00000311487 CYP4F22Q6NT55 531 aa21.34■■□□□ 1.01
HMGA1-201ENST00000311487 BRF1Q92994 677 aa21.34■■□□□ 1.01
HMGA1-201ENST00000311487 FEZ1Q99689 392 aa21.34■■□□□ 1.01
HMGA1-201ENST00000311487 LY9Q9HBG7 655 aa21.34■■□□□ 1.01
HMGA1-201ENST00000311487 ERICH2A1L162 156 aa21.33■■□□□ 1.01
HMGA1-201ENST00000311487 DTNBO60941 627 aa21.33■■□□□ 1.01
HMGA1-201ENST00000311487 HMGB1P09429 215 aaKnown RBP21.33■■□□□ 1.01
HMGA1-201ENST00000311487 APOBRQ0VD83 1088 aa21.33■■□□□ 1.01
HMGA1-201ENST00000311487 WTAPQ15007 396 aa21.33■■□□□ 1.01
HMGA1-201ENST00000311487 SEC23AQ15436 765 aa21.33■■□□□ 1.01
HMGA1-201ENST00000311487 NFXL1Q6ZNB6 911 aa21.33■■□□□ 1.01
HMGA1-201ENST00000311487 ERO1BQ86YB8 467 aa21.33■■□□□ 1.01
HMGA1-201ENST00000311487 CCDC144CPQ8IYA2 1237 aa21.33■■□□□ 1.01
HMGA1-201ENST00000311487 ZNF280CQ8ND82 737 aa21.33■■□□□ 1.01
HMGA1-201ENST00000311487 TM6SF1Q9BZW5 370 aa21.33■■□□□ 1.01
HMGA1-201ENST00000311487 AFG3L2Q9Y4W6 797 aa21.33■■□□□ 1.01
HMGA1-201ENST00000311487 SH2B2O14492 632 aaPredicted RBP21.33■■□□□ 1
HMGA1-201ENST00000311487 CD2BP2O95400 341 aaKnown RBP21.33■■□□□ 1
HMGA1-201ENST00000311487 HMGCS2P54868 508 aa21.33■■□□□ 1
HMGA1-201ENST00000311487 RGMBQ6NW40 437 aa21.33■■□□□ 1
HMGA1-201ENST00000311487 TCP11L1Q9NUJ3 509 aa21.33■■□□□ 1
HMGA1-201ENST00000311487 SPDYE5A6NIY4 337 aa21.32■■□□□ 1
HMGA1-201ENST00000311487 AK2P54819 239 aa21.32■■□□□ 1
HMGA1-201ENST00000311487 TOB2Q14106 344 aaPredicted RBP21.32■■□□□ 1
HMGA1-201ENST00000311487 SART3Q15020 963 aaKnown RBP21.32■■□□□ 1
HMGA1-201ENST00000311487 ZIC5Q96T25 663 aa21.32■■□□□ 1
HMGA1-201ENST00000311487 NUP88Q99567 741 aaPredicted RBP21.32■■□□□ 1
HMGA1-201ENST00000311487 BRPF3Q9ULD4 1205 aa21.32■■□□□ 1
HMGA1-201ENST00000311487 ISY1Q9ULR0 285 aaKnown RBP21.32■■□□□ 1
HMGA1-201ENST00000311487 PLIN4Q96Q06 1357 aa21.32■■□□□ 1
HMGA1-201ENST00000311487 C1QTNF8P60827 252 aa21.31■■□□□ 1
HMGA1-201ENST00000311487 WNK4Q96J92 1243 aa21.31■■□□□ 1
HMGA1-201ENST00000311487 CREBZFQ9NS37 354 aa21.31■■□□□ 1
HMGA1-201ENST00000311487 SAMD1Q6SPF0 538 aaPredicted RBP21.31■■□□□ 1
HMGA1-201ENST00000311487 RASAL3Q86YV0 1011 aa21.31■■□□□ 1
HMGA1-201ENST00000311487 KAT14Q9H8E8 782 aa21.31■■□□□ 1
HMGA1-201ENST00000311487 ARHGEF10LQ9HCE6 1279 aa21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms