RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 GUCY1A2P33402 732 aa16.52■□□□□ 0.24
C9orf3-202ENST00000297979 APOBEC3HQ6NTF7 200 aaKnown RBP16.52■□□□□ 0.24
C9orf3-202ENST00000297979 CDC42EP5Q6NZY7 148 aa16.52■□□□□ 0.24
C9orf3-202ENST00000297979 LRSAM1Q6UWE0 723 aa16.52■□□□□ 0.24
C9orf3-202ENST00000297979 KIAA0825Q8IV33 1275 aa16.52■□□□□ 0.24
C9orf3-202ENST00000297979 CTCFLQ8NI51 663 aaPredicted RBP16.52■□□□□ 0.24
C9orf3-202ENST00000297979 ZDHHC15Q96MV8 337 aa16.52■□□□□ 0.24
C9orf3-202ENST00000297979 MRIQ9BWK5 157 aa16.52■□□□□ 0.24
C9orf3-202ENST00000297979 FTOQ9C0B1 505 aaKnown RBP eCLIP16.52■□□□□ 0.24
C9orf3-202ENST00000297979 KAT14Q9H8E8 782 aa16.52■□□□□ 0.24
C9orf3-202ENST00000297979 HDLBPQ00341 1268 aaKnown RBP16.52■□□□□ 0.23
C9orf3-202ENST00000297979 MYSM1Q5VVJ2 828 aa16.52■□□□□ 0.23
C9orf3-202ENST00000297979 XRCC6P12956 609 aaKnown RBP eCLIP16.51■□□□□ 0.23
C9orf3-202ENST00000297979 AKAP17AQ02040 695 aaKnown RBP16.51■□□□□ 0.23
C9orf3-202ENST00000297979 TMTC3Q6ZXV5 915 aa16.51■□□□□ 0.23
C9orf3-202ENST00000297979 DDX4Q9NQI0 724 aaKnown RBP16.51■□□□□ 0.23
C9orf3-202ENST00000297979 ZBTB7AO95365 584 aa16.51■□□□□ 0.23
C9orf3-202ENST00000297979 PLEKHA8P1O95397 391 aa16.51■□□□□ 0.23
C9orf3-202ENST00000297979 FUT2Q10981 343 aa16.51■□□□□ 0.23
C9orf3-202ENST00000297979 PGBD1Q96JS3 809 aa16.51■□□□□ 0.23
C9orf3-202ENST00000297979 PSMD1Q99460 953 aa16.51■□□□□ 0.23
C9orf3-202ENST00000297979 RTEL1Q9NZ71 1219 aa16.51■□□□□ 0.23
C9orf3-202ENST00000297979 GNL2Q13823 731 aaKnown RBP16.51■□□□□ 0.23
C9orf3-202ENST00000297979 PSME4Q14997 1843 aa16.5■□□□□ 0.23
C9orf3-202ENST00000297979 LETM1O95202 739 aaPredicted RBP16.5■□□□□ 0.23
C9orf3-202ENST00000297979 PRPF3O43395 683 aaKnown RBP16.5■□□□□ 0.23
C9orf3-202ENST00000297979 KIF5BP33176 963 aa16.5■□□□□ 0.23
C9orf3-202ENST00000297979 PNMA1Q8ND90 353 aa16.5■□□□□ 0.23
C9orf3-202ENST00000297979 NEDD1Q8NHV4 660 aa16.5■□□□□ 0.23
C9orf3-202ENST00000297979 BICD2Q8TD16 824 aa16.5■□□□□ 0.23
C9orf3-202ENST00000297979 OSBPL5Q9H0X9 879 aaPredicted RBP16.5■□□□□ 0.23
C9orf3-202ENST00000297979 POLR3EQ9NVU0 708 aa16.5■□□□□ 0.23
C9orf3-202ENST00000297979 YDJCA8MPS7 323 aa16.49■□□□□ 0.23
C9orf3-202ENST00000297979 MMP1P03956 469 aa16.49■□□□□ 0.23
C9orf3-202ENST00000297979 U2AF2P26368 475 aaKnown RBP eCLIP16.49■□□□□ 0.233e-8■□□□□ 10.2
C9orf3-202ENST00000297979 SAFBQ15424 915 aaKnown RBP eCLIP16.49■□□□□ 0.23
C9orf3-202ENST00000297979 MAP3K14Q99558 947 aa16.49■□□□□ 0.23
C9orf3-202ENST00000297979 LIG1P18858 919 aa16.49■□□□□ 0.23
C9orf3-202ENST00000297979 POLD1P28340 1107 aa16.49■□□□□ 0.23
C9orf3-202ENST00000297979 MTFR1LQ9H019 292 aa16.49■□□□□ 0.23
C9orf3-202ENST00000297979 SERPINA10Q9UK55 444 aa16.49■□□□□ 0.23
C9orf3-202ENST00000297979 CNTNAP5Q8WYK1 1306 aa16.49■□□□□ 0.23
C9orf3-202ENST00000297979 YEATS4O95619 227 aa16.48■□□□□ 0.23
C9orf3-202ENST00000297979 RBM5P52756 815 aaKnown RBP eCLIP16.48■□□□□ 0.232e-7■■■■□ 26.1
C9orf3-202ENST00000297979 TGFB2P61812 414 aa16.48■□□□□ 0.23
C9orf3-202ENST00000297979 GABPAQ06546 454 aa16.48■□□□□ 0.23
C9orf3-202ENST00000297979 XBP1P17861 261 aa16.48■□□□□ 0.23
C9orf3-202ENST00000297979 NASPP49321 788 aaPredicted RBP16.48■□□□□ 0.23
C9orf3-202ENST00000297979 SOGA3Q5TF21 947 aa16.48■□□□□ 0.23
C9orf3-202ENST00000297979 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.48■□□□□ 0.23
C9orf3-202ENST00000297979 STX8Q9UNK0 236 aa16.48■□□□□ 0.23
C9orf3-202ENST00000297979 CLIC4Q9Y696 253 aa16.48■□□□□ 0.23
C9orf3-202ENST00000297979 MYH8P13535 1937 aa16.48■□□□□ 0.23
C9orf3-202ENST00000297979 PKN1Q16512 942 aa16.47■□□□□ 0.23
C9orf3-202ENST00000297979 SRBD1Q8N5C6 995 aaKnown RBP16.47■□□□□ 0.23
C9orf3-202ENST00000297979 LINC00301Q8NCQ3 95 aa16.47■□□□□ 0.23
C9orf3-202ENST00000297979 KCNJ14Q9UNX9 436 aa16.47■□□□□ 0.23
C9orf3-202ENST00000297979 ATF5Q9Y2D1 282 aaPredicted RBP16.47■□□□□ 0.23
C9orf3-202ENST00000297979 V9GY48 417 aaPredicted RBP16.47■□□□□ 0.23
C9orf3-202ENST00000297979 PLIN4Q96Q06 1357 aa16.47■□□□□ 0.23
C9orf3-202ENST00000297979 HLA-DOAP06340 250 aa16.47■□□□□ 0.23
C9orf3-202ENST00000297979 STK38Q15208 465 aa16.47■□□□□ 0.23
C9orf3-202ENST00000297979 DIS3L2Q8IYB7 885 aaKnown RBP16.47■□□□□ 0.23
C9orf3-202ENST00000297979 KCNG4Q8TDN1 519 aa16.47■□□□□ 0.23
C9orf3-202ENST00000297979 TMEM47Q9BQJ4 181 aa16.47■□□□□ 0.23
C9orf3-202ENST00000297979 SWAP70Q9UH65 585 aa16.47■□□□□ 0.23
C9orf3-202ENST00000297979 SERPINB13Q9UIV8 391 aa16.47■□□□□ 0.23
C9orf3-202ENST00000297979 PRDM4Q9UKN5 801 aa16.47■□□□□ 0.23
C9orf3-202ENST00000297979 ME1P48163 572 aa16.46■□□□□ 0.23
C9orf3-202ENST00000297979 NFIAQ12857 509 aa16.46■□□□□ 0.23
C9orf3-202ENST00000297979 GRM4Q14833 912 aa16.46■□□□□ 0.23
C9orf3-202ENST00000297979 ANO1Q5XXA6 986 aa16.46■□□□□ 0.23
C9orf3-202ENST00000297979 LARGE2Q8N3Y3 721 aa16.46■□□□□ 0.23
C9orf3-202ENST00000297979 FOXP1Q9H334 677 aaPredicted RBP16.46■□□□□ 0.23
C9orf3-202ENST00000297979 DDX19AQ9NUU7 478 aaKnown RBP16.46■□□□□ 0.23
C9orf3-202ENST00000297979 PIM2Q9P1W9 311 aa16.46■□□□□ 0.23
C9orf3-202ENST00000297979 PCDHAC2Q9Y5I4 1007 aa16.46■□□□□ 0.23
C9orf3-202ENST00000297979 NOSTRINQ8IVI9 506 aa16.46■□□□□ 0.23
C9orf3-202ENST00000297979 VPS33BQ9H267 617 aa16.46■□□□□ 0.23
C9orf3-202ENST00000297979 TSPY26PQ9H489 355 aa16.46■□□□□ 0.23
C9orf3-202ENST00000297979 ZNF277Q9NRM2 450 aaPredicted RBP16.46■□□□□ 0.23
C9orf3-202ENST00000297979 DACT1Q9NYF0 836 aa16.46■□□□□ 0.23
C9orf3-202ENST00000297979 MYO3BQ8WXR4 1341 aa16.46■□□□□ 0.23
C9orf3-202ENST00000297979 FAM43BQ6ZT52 329 aaPredicted RBP16.46■□□□□ 0.22
C9orf3-202ENST00000297979 IDI2Q9BXS1 227 aa16.46■□□□□ 0.22
C9orf3-202ENST00000297979 PANK2Q9BZ23 570 aa16.46■□□□□ 0.22
C9orf3-202ENST00000297979 NUP62CLQ9H1M0 184 aa16.46■□□□□ 0.22
C9orf3-202ENST00000297979 hCG_1642624A0A1W2PR95 340 aa16.45■□□□□ 0.22
C9orf3-202ENST00000297979 BTBD18B2RXH4 712 aa16.45■□□□□ 0.22
C9orf3-202ENST00000297979 GNAQP50148 359 aa16.45■□□□□ 0.22
C9orf3-202ENST00000297979 SF3A1Q15459 793 aaKnown RBP16.45■□□□□ 0.22
C9orf3-202ENST00000297979 RBSNQ9H1K0 784 aa16.45■□□□□ 0.22
C9orf3-202ENST00000297979 SPTLC2O15270 562 aa16.45■□□□□ 0.22
C9orf3-202ENST00000297979 CEP95Q96GE4 821 aa16.45■□□□□ 0.22
C9orf3-202ENST00000297979 EHD4Q9H223 541 aa16.45■□□□□ 0.22
C9orf3-202ENST00000297979 VPS54Q9P1Q0 977 aa16.45■□□□□ 0.22
C9orf3-202ENST00000297979 COL4A5P29400 1685 aa16.45■□□□□ 0.22
C9orf3-202ENST00000297979 NOVP48745 357 aa16.44■□□□□ 0.22
C9orf3-202ENST00000297979 CCAR1Q8IX12 1150 aaKnown RBP16.44■□□□□ 0.22
C9orf3-202ENST00000297979 PLCD3Q8N3E9 789 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms