RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 MPHOSPH6Q99547 160 aaKnown RBP10.97□□□□□ -0.65
COL6A3-201ENST00000295550 RIPOR2Q9Y4F9 1068 aa10.97□□□□□ -0.65
COL6A3-201ENST00000295550 DEXIO95424 95 aa10.97□□□□□ -0.65
COL6A3-201ENST00000295550 IQUBQ8NA54 791 aa10.97□□□□□ -0.65
COL6A3-201ENST00000295550 STK38LQ9Y2H1 464 aa10.97□□□□□ -0.65
COL6A3-201ENST00000295550 PPFIA1Q13136 1202 aa10.97□□□□□ -0.65
COL6A3-201ENST00000295550 BEND3Q5T5X7 828 aa10.97□□□□□ -0.65
COL6A3-201ENST00000295550 PUM3Q15397 648 aaKnown RBP10.97□□□□□ -0.65
COL6A3-201ENST00000295550 NCOA5Q9HCD5 579 aaKnown RBP10.97□□□□□ -0.65
COL6A3-201ENST00000295550 MGEA5O60502 916 aa10.96□□□□□ -0.65
COL6A3-201ENST00000295550 NEXMIFQ5QGS0 1516 aa10.96□□□□□ -0.65
COL6A3-201ENST00000295550 RBBP5Q15291 538 aaKnown RBP10.96□□□□□ -0.65
COL6A3-201ENST00000295550 ZNF202O95125 648 aa10.96□□□□□ -0.65
COL6A3-201ENST00000295550 MTMR6Q9Y217 621 aa10.96□□□□□ -0.65
COL6A3-201ENST00000295550 KIDINS220Q9ULH0 1771 aa10.96□□□□□ -0.65
COL6A3-201ENST00000295550 OPHN1O60890 802 aa10.96□□□□□ -0.65
COL6A3-201ENST00000295550 SESN3P58005 492 aa10.96□□□□□ -0.65
COL6A3-201ENST00000295550 NCAPD2Q15021 1401 aa10.96□□□□□ -0.65
COL6A3-201ENST00000295550 PFKFB2O60825 505 aa10.96□□□□□ -0.65
COL6A3-201ENST00000295550 FANCCQ00597 558 aa10.96□□□□□ -0.65
COL6A3-201ENST00000295550 DBNDD2Q9BQY9 259 aa10.96□□□□□ -0.65
COL6A3-201ENST00000295550 A0A0D9SFI3 127 aa10.96□□□□□ -0.66
COL6A3-201ENST00000295550 RASA3Q14644 834 aa10.96□□□□□ -0.66
COL6A3-201ENST00000295550 MRFAP1L1Q96HT8 127 aa10.96□□□□□ -0.66
COL6A3-201ENST00000295550 C19orf44Q9H6X5 657 aa10.96□□□□□ -0.66
COL6A3-201ENST00000295550 LGR6Q9HBX8 967 aa10.96□□□□□ -0.66
COL6A3-201ENST00000295550 PREX1Q8TCU6 1659 aa10.96□□□□□ -0.66
COL6A3-201ENST00000295550 NOX5Q96PH1 765 aa10.96□□□□□ -0.66
COL6A3-201ENST00000295550 ADGRL3Q9HAR2 1447 aa10.96□□□□□ -0.66
COL6A3-201ENST00000295550 NRKQ7Z2Y5 1582 aa10.96□□□□□ -0.66
COL6A3-201ENST00000295550 TACO1Q9BSH4 297 aaKnown RBP10.95□□□□□ -0.66
COL6A3-201ENST00000295550 RUFY4Q6ZNE9 571 aa10.95□□□□□ -0.66
COL6A3-201ENST00000295550 APPBP2Q92624 585 aa10.95□□□□□ -0.66
COL6A3-201ENST00000295550 TTF2Q9UNY4 1162 aaKnown RBP10.95□□□□□ -0.66
COL6A3-201ENST00000295550 CYP26C1Q6V0L0 522 aa10.95□□□□□ -0.66
COL6A3-201ENST00000295550 IGSF22Q8N9C0 903 aa10.95□□□□□ -0.66
COL6A3-201ENST00000295550 VSIG1Q86XK7 387 aa10.95□□□□□ -0.66
COL6A3-201ENST00000295550 KIFC2Q96AC6 838 aa10.95□□□□□ -0.66
COL6A3-201ENST00000295550 HAUS7Q99871 368 aa10.95□□□□□ -0.66
COL6A3-201ENST00000295550 NRXN1Q9ULB1 1477 aa10.95□□□□□ -0.66
COL6A3-201ENST00000295550 IRS4O14654 1257 aaPredicted RBP10.95□□□□□ -0.66
COL6A3-201ENST00000295550 XAGE2Q96GT9 111 aa10.95□□□□□ -0.66
COL6A3-201ENST00000295550 ARHGAP6O43182 974 aa10.95□□□□□ -0.66
COL6A3-201ENST00000295550 SPOPO43791 374 aa10.95□□□□□ -0.66
COL6A3-201ENST00000295550 PTH1RQ03431 593 aa10.95□□□□□ -0.66
COL6A3-201ENST00000295550 CUL4AQ13619 759 aa10.95□□□□□ -0.66
COL6A3-201ENST00000295550 AGTPBP1Q9UPW5 1226 aa10.95□□□□□ -0.66
COL6A3-201ENST00000295550 TTLL12Q14166 644 aaPredicted RBP10.95□□□□□ -0.66
COL6A3-201ENST00000295550 KLHDC4Q8TBB5 520 aa10.95□□□□□ -0.66
COL6A3-201ENST00000295550 DCAF17Q5H9S7 520 aaPredicted RBP10.95□□□□□ -0.66
COL6A3-201ENST00000295550 NBPF6Q5VWK0 638 aa10.95□□□□□ -0.66
COL6A3-201ENST00000295550 RPAINQ86UA6 219 aa10.95□□□□□ -0.66
COL6A3-201ENST00000295550 NBPF5PQ86XG9 351 aaPredicted RBP10.95□□□□□ -0.66
COL6A3-201ENST00000295550 MORC4Q8TE76 937 aa10.95□□□□□ -0.66
COL6A3-201ENST00000295550 NBPF4Q96M43 638 aa10.95□□□□□ -0.66
COL6A3-201ENST00000295550 PFDN1O60925 122 aa10.95□□□□□ -0.66
COL6A3-201ENST00000295550 FRMD4BQ9Y2L6 1034 aa10.95□□□□□ -0.66
COL6A3-201ENST00000295550 GPAA1O43292 621 aa10.94□□□□□ -0.66
COL6A3-201ENST00000295550 HLA-DOAP06340 250 aa10.94□□□□□ -0.66
COL6A3-201ENST00000295550 ATP6V1AP38606 617 aa10.94□□□□□ -0.66
COL6A3-201ENST00000295550 RASSF2P50749 326 aa10.94□□□□□ -0.66
COL6A3-201ENST00000295550 RNASE9P60153 205 aaKnown RBP10.94□□□□□ -0.66
COL6A3-201ENST00000295550 DACT3Q96B18 629 aaPredicted RBP10.94□□□□□ -0.66
COL6A3-201ENST00000295550 MRRFQ96E11 262 aaKnown RBP10.94□□□□□ -0.66
COL6A3-201ENST00000295550 TPCN1Q9ULQ1 816 aa10.94□□□□□ -0.66
COL6A3-201ENST00000295550 ANKARQ7Z5J8 1434 aa10.94□□□□□ -0.66
COL6A3-201ENST00000295550 NUTM2BA6NNL0 878 aaPredicted RBP10.94□□□□□ -0.66
COL6A3-201ENST00000295550 NUTM2EB1AL46 878 aaPredicted RBP10.94□□□□□ -0.66
COL6A3-201ENST00000295550 STK10O94804 968 aaKnown RBP10.94□□□□□ -0.66
COL6A3-201ENST00000295550 PEX19P40855 299 aa10.94□□□□□ -0.66
COL6A3-201ENST00000295550 ZSCAN26Q16670 478 aa10.94□□□□□ -0.66
COL6A3-201ENST00000295550 HHATQ5VTY9 493 aa10.94□□□□□ -0.66
COL6A3-201ENST00000295550 MAP3K21Q5TCX8 1036 aa10.94□□□□□ -0.66
COL6A3-201ENST00000295550 CAPN7Q9Y6W3 813 aa10.94□□□□□ -0.66
COL6A3-201ENST00000295550 E7EWF7 191 aa10.94□□□□□ -0.66
COL6A3-201ENST00000295550 SLC8A1P32418 973 aa10.94□□□□□ -0.66
COL6A3-201ENST00000295550 NAPAP54920 295 aa10.94□□□□□ -0.66
COL6A3-201ENST00000295550 ZNF804AQ7Z570 1209 aa10.94□□□□□ -0.66
COL6A3-201ENST00000295550 CXorf38Q8TB03 319 aa10.94□□□□□ -0.66
COL6A3-201ENST00000295550 ZNF274Q96GC6 653 aaPredicted RBP10.94□□□□□ -0.66
COL6A3-201ENST00000295550 BAZ2BQ9UIF8 2168 aaKnown RBP10.94□□□□□ -0.66
COL6A3-201ENST00000295550 MBD4O95243 580 aa10.94□□□□□ -0.66
COL6A3-201ENST00000295550 STX17P56962 302 aa10.94□□□□□ -0.66
COL6A3-201ENST00000295550 RASEFQ8IZ41 740 aa10.94□□□□□ -0.66
COL6A3-201ENST00000295550 PNPLA6Q8IY17 1366 aa10.94□□□□□ -0.66
COL6A3-201ENST00000295550 MTMR3Q13615 1198 aa10.94□□□□□ -0.66
COL6A3-201ENST00000295550 PPP2R5BQ15173 497 aa10.94□□□□□ -0.66
COL6A3-201ENST00000295550 MLKLQ8NB16 471 aa10.94□□□□□ -0.66
COL6A3-201ENST00000295550 LRRC43Q8N309 656 aa10.94□□□□□ -0.66
COL6A3-201ENST00000295550 FRMD3A2A2Y4 597 aa10.93□□□□□ -0.66
COL6A3-201ENST00000295550 PPARDQ03181 441 aa10.93□□□□□ -0.66
COL6A3-201ENST00000295550 RAPGEF1Q13905 1077 aa10.93□□□□□ -0.66
COL6A3-201ENST00000295550 SIRT2Q8IXJ6 389 aa10.93□□□□□ -0.66
COL6A3-201ENST00000295550 MYH9P35579 1960 aaKnown RBP10.93□□□□□ -0.66
COL6A3-201ENST00000295550 JAK2O60674 1132 aa10.93□□□□□ -0.66
COL6A3-201ENST00000295550 IRX4P78413 519 aa10.93□□□□□ -0.66
COL6A3-201ENST00000295550 KRT5P13647 590 aa10.93□□□□□ -0.66
COL6A3-201ENST00000295550 CA8P35219 290 aa10.93□□□□□ -0.66
COL6A3-201ENST00000295550 IRX5P78411 483 aaPredicted RBP10.93□□□□□ -0.66
COL6A3-201ENST00000295550 ADALQ6DHV7 355 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms