RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 RAD21O60216 631 aa19.13■□□□□ 0.65
USP4-201ENST00000265560 MBD3O95983 291 aa19.13■□□□□ 0.65
USP4-201ENST00000265560 TGFB2P61812 414 aa19.13■□□□□ 0.65
USP4-201ENST00000265560 RASSF7Q02833 373 aa19.13■□□□□ 0.65
USP4-201ENST00000265560 SH3BP5LQ7L8J4 393 aa19.13■□□□□ 0.65
USP4-201ENST00000265560 LRRC47Q8N1G4 583 aaKnown RBP19.13■□□□□ 0.65
USP4-201ENST00000265560 PSMD1Q99460 953 aa19.13■□□□□ 0.65
USP4-201ENST00000265560 PANK2Q9BZ23 570 aa19.13■□□□□ 0.65
USP4-201ENST00000265560 MYH6P13533 1939 aa19.12■□□□□ 0.65
USP4-201ENST00000265560 AKAP17AQ02040 695 aaKnown RBP19.12■□□□□ 0.65
USP4-201ENST00000265560 RBM26Q5T8P6 1007 aaKnown RBP19.12■□□□□ 0.65
USP4-201ENST00000265560 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.12■□□□□ 0.65
USP4-201ENST00000265560 SCAND2PQ9GZW5 306 aaPredicted RBP19.12■□□□□ 0.65
USP4-201ENST00000265560 CXCL9Q07325 125 aa19.12■□□□□ 0.65
USP4-201ENST00000265560 FUT2Q10981 343 aa19.12■□□□□ 0.65
USP4-201ENST00000265560 CERS3Q8IU89 383 aa19.12■□□□□ 0.65
USP4-201ENST00000265560 MTA3Q9BTC8 594 aa19.12■□□□□ 0.65
USP4-201ENST00000265560 ROBO3Q96MS0 1386 aa19.12■□□□□ 0.65
USP4-201ENST00000265560 PTGER2P43116 358 aa19.11■□□□□ 0.65
USP4-201ENST00000265560 PKN1Q16512 942 aa19.11■□□□□ 0.65
USP4-201ENST00000265560 RSBN1LQ6PCB5 846 aaPredicted RBP19.11■□□□□ 0.65
USP4-201ENST00000265560 USP17L2Q6R6M4 530 aa19.11■□□□□ 0.65
USP4-201ENST00000265560 NIM1KQ8IY84 436 aa19.11■□□□□ 0.65
USP4-201ENST00000265560 ECM29Q5VYK3 1845 aa19.11■□□□□ 0.65
USP4-201ENST00000265560 NFKBIEO00221 500 aa19.11■□□□□ 0.65
USP4-201ENST00000265560 PDIA4P13667 645 aaKnown RBP19.11■□□□□ 0.65
USP4-201ENST00000265560 TMTC3Q6ZXV5 915 aa19.11■□□□□ 0.65
USP4-201ENST00000265560 CDAN1Q8IWY9 1227 aa19.11■□□□□ 0.65
USP4-201ENST00000265560 BICD2Q8TD16 824 aa19.11■□□□□ 0.65
USP4-201ENST00000265560 TAOK3Q9H2K8 898 aa19.11■□□□□ 0.65
USP4-201ENST00000265560 SGIP1Q9BQI5 828 aa19.11■□□□□ 0.65
USP4-201ENST00000265560 DNAJC18Q9H819 358 aa19.11■□□□□ 0.65
USP4-201ENST00000265560 VAT1LQ9HCJ6 419 aa19.11■□□□□ 0.65
USP4-201ENST00000265560 FAM205CA6NFA0 338 aa19.1■□□□□ 0.65
USP4-201ENST00000265560 ADAMTS3O15072 1205 aa19.1■□□□□ 0.65
USP4-201ENST00000265560 MYSM1Q5VVJ2 828 aa19.1■□□□□ 0.65
USP4-201ENST00000265560 VEZTQ9HBM0 779 aa19.1■□□□□ 0.65
USP4-201ENST00000265560 DEXIO95424 95 aa19.1■□□□□ 0.65
USP4-201ENST00000265560 MARCKSP29966 332 aaPredicted RBP19.1■□□□□ 0.65
USP4-201ENST00000265560 SHMT1P34896 483 aa19.1■□□□□ 0.65
USP4-201ENST00000265560 ME1P48163 572 aa19.1■□□□□ 0.65
USP4-201ENST00000265560 GABPAQ06546 454 aa19.1■□□□□ 0.65
USP4-201ENST00000265560 NOM1Q5C9Z4 860 aaKnown RBP19.1■□□□□ 0.65
USP4-201ENST00000265560 DGKHQ86XP1 1220 aa19.1■□□□□ 0.65
USP4-201ENST00000265560 DIS3L2Q8IYB7 885 aaKnown RBP19.1■□□□□ 0.65
USP4-201ENST00000265560 GPKOWQ92917 476 aaPredicted RBP eCLIP19.1■□□□□ 0.65
USP4-201ENST00000265560 CFAP45Q9UL16 551 aa19.1■□□□□ 0.65
USP4-201ENST00000265560 IGSF3O75054 1194 aa19.09■□□□□ 0.65
USP4-201ENST00000265560 NEDD1Q8NHV4 660 aa19.09■□□□□ 0.65
USP4-201ENST00000265560 ZNF287Q9HBT7 754 aa19.09■□□□□ 0.65
USP4-201ENST00000265560 SERPINA10Q9UK55 444 aa19.09■□□□□ 0.65
USP4-201ENST00000265560 ZNRF3Q9ULT6 936 aa19.09■□□□□ 0.65
USP4-201ENST00000265560 DLEC1Q9Y238 1755 aa19.09■□□□□ 0.65
USP4-201ENST00000265560 DDAH1O94760 285 aa19.09■□□□□ 0.65
USP4-201ENST00000265560 XRCC6P12956 609 aaKnown RBP eCLIP19.09■□□□□ 0.65
USP4-201ENST00000265560 SLC35G1Q2M3R5 365 aa19.09■□□□□ 0.65
USP4-201ENST00000265560 RNF214Q8ND24 703 aa19.09■□□□□ 0.65
USP4-201ENST00000265560 CLIP2Q9UDT6 1046 aa19.09■□□□□ 0.65
USP4-201ENST00000265560 ISY1Q9ULR0 285 aaKnown RBP19.09■□□□□ 0.65
USP4-201ENST00000265560 GDF11O95390 407 aa19.09■□□□□ 0.65
USP4-201ENST00000265560 EGFRP00533 1210 aa19.09■□□□□ 0.65
USP4-201ENST00000265560 PRELPP51888 382 aa19.09■□□□□ 0.65
USP4-201ENST00000265560 OGFOD1Q8N543 542 aa19.09■□□□□ 0.65
USP4-201ENST00000265560 FRMPD2Q68DX3 1309 aaPredicted RBP19.08■□□□□ 0.65
USP4-201ENST00000265560 CSPP1Q1MSJ5 1256 aa19.08■□□□□ 0.65
USP4-201ENST00000265560 HOMER1Q86YM7 354 aa19.08■□□□□ 0.65
USP4-201ENST00000265560 UBA5Q9GZZ9 404 aa19.08■□□□□ 0.65
USP4-201ENST00000265560 DACT1Q9NYF0 836 aa19.08■□□□□ 0.65
USP4-201ENST00000265560 HLA-DOAP06340 250 aa19.08■□□□□ 0.64
USP4-201ENST00000265560 VIL1P09327 827 aaKnown RBP19.08■□□□□ 0.64
USP4-201ENST00000265560 JDP2Q8WYK2 163 aa19.08■□□□□ 0.64
USP4-201ENST00000265560 MAD2L2Q9UI95 211 aa19.08■□□□□ 0.64
USP4-201ENST00000265560 CNTNAP5Q8WYK1 1306 aa19.08■□□□□ 0.64
USP4-201ENST00000265560 FSD2A1L4K1 749 aa19.07■□□□□ 0.64
USP4-201ENST00000265560 USP17L5A8MUK1 530 aa19.07■□□□□ 0.64
USP4-201ENST00000265560 NR1I2O75469 434 aa19.07■□□□□ 0.64
USP4-201ENST00000265560 CALM1P0DP23 149 aa19.07■□□□□ 0.64
USP4-201ENST00000265560 CALM2P0DP24 149 aa19.07■□□□□ 0.64
USP4-201ENST00000265560 CALM3P0DP25 149 aa19.07■□□□□ 0.64
USP4-201ENST00000265560 STK38Q15208 465 aa19.07■□□□□ 0.64
USP4-201ENST00000265560 ZNF396Q96N95 335 aaPredicted RBP19.07■□□□□ 0.64
USP4-201ENST00000265560 MMP1P03956 469 aa19.07■□□□□ 0.64
USP4-201ENST00000265560 DLGAP5Q15398 846 aa19.07■□□□□ 0.64
USP4-201ENST00000265560 SF3A1Q15459 793 aaKnown RBP19.07■□□□□ 0.64
USP4-201ENST00000265560 NBPF9Q3BBW0 867 aa19.07■□□□□ 0.64
USP4-201ENST00000265560 RNF26Q9BY78 433 aaPredicted RBP19.07■□□□□ 0.64
USP4-201ENST00000265560 GJA3Q9Y6H8 435 aa19.07■□□□□ 0.64
USP4-201ENST00000265560 FOCADQ5VW36 1801 aa19.07■□□□□ 0.64
USP4-201ENST00000265560 CYTH3O43739 400 aa19.07■□□□□ 0.64
USP4-201ENST00000265560 EARS2Q5JPH6 523 aaKnown RBP19.07■□□□□ 0.64
USP4-201ENST00000265560 RBM28Q9NW13 759 aaKnown RBP19.07■□□□□ 0.64
USP4-201ENST00000265560 STK36Q9NRP7 1315 aa19.06■□□□□ 0.64
USP4-201ENST00000265560 ZNF646O15015 1829 aaPredicted RBP19.06■□□□□ 0.64
USP4-201ENST00000265560 GMLQ99445 158 aa19.06■□□□□ 0.64
USP4-201ENST00000265560 GRPEL1Q9HAV7 217 aa19.06■□□□□ 0.64
USP4-201ENST00000265560 RCOR1Q9UKL0 485 aa19.06■□□□□ 0.64
USP4-201ENST00000265560 NID2Q14112 1375 aa19.06■□□□□ 0.64
USP4-201ENST00000265560 SPDYE2BA6NHP3 402 aa19.06■□□□□ 0.64
USP4-201ENST00000265560 SPDYE6P0CI01 402 aa19.06■□□□□ 0.64
USP4-201ENST00000265560 CABP5Q9NP86 173 aa19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms