RNA–Protein interactions for RNA: ENST00000225441.11

RUNDC3A-201, Transcript of RUN domain containing 3A, humanhuman

TSL 1 (best) BASIC

Gene RUNDC3A, Length 1,821 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RUNDC3A-201ENST00000225441 CHD4Q14839 1912 aa28.6■■■□□ 2.17
RUNDC3A-201ENST00000225441 IFIT3O14879 490 aaKnown RBP28.59■■■□□ 2.17
RUNDC3A-201ENST00000225441 MFSD6Q6ZSS7 791 aa28.59■■■□□ 2.17
RUNDC3A-201ENST00000225441 XPO4Q9C0E2 1151 aaKnown RBP28.59■■■□□ 2.17
RUNDC3A-201ENST00000225441 MROH7-TTC4A0A0A0MT08 1334 aa28.59■■■□□ 2.17
RUNDC3A-201ENST00000225441 SHC4Q6S5L8 630 aa28.59■■■□□ 2.17
RUNDC3A-201ENST00000225441 MICU3Q86XE3 530 aa28.59■■■□□ 2.17
RUNDC3A-201ENST00000225441 RAB11FIP4Q86YS3 637 aa28.59■■■□□ 2.17
RUNDC3A-201ENST00000225441 TRIM22Q8IYM9 498 aa28.59■■■□□ 2.17
RUNDC3A-201ENST00000225441 GJB4Q9NTQ9 266 aa28.59■■■□□ 2.17
RUNDC3A-201ENST00000225441 ZSWIM5Q9P217 1185 aa28.59■■■□□ 2.17
RUNDC3A-201ENST00000225441 PPP1R1BQ9UD71 204 aaPredicted RBP28.59■■■□□ 2.17
RUNDC3A-201ENST00000225441 ECM29Q5VYK3 1845 aa28.59■■■□□ 2.17
RUNDC3A-201ENST00000225441 MBD4O95243 580 aa28.58■■■□□ 2.17
RUNDC3A-201ENST00000225441 GRIPAP1Q4V328 841 aa28.58■■■□□ 2.17
RUNDC3A-201ENST00000225441 FOXP1Q9H334 677 aaPredicted RBP28.58■■■□□ 2.17
RUNDC3A-201ENST00000225441 EPB41L4AQ9HCS5 686 aaPredicted RBP28.58■■■□□ 2.17
RUNDC3A-201ENST00000225441 IFNKQ9P0W0 207 aa28.58■■■□□ 2.17
RUNDC3A-201ENST00000225441 PIM2Q9P1W9 311 aa28.58■■■□□ 2.17
RUNDC3A-201ENST00000225441 CGNQ9P2M7 1197 aaKnown RBP28.58■■■□□ 2.17
RUNDC3A-201ENST00000225441 GSG1L2A8MUP6 293 aa28.57■■■□□ 2.16
RUNDC3A-201ENST00000225441 SFPQP23246 707 aaKnown RBP eCLIP28.57■■■□□ 2.16
RUNDC3A-201ENST00000225441 CCDC93Q567U6 631 aa28.57■■■□□ 2.16
RUNDC3A-201ENST00000225441 KIF18AQ8NI77 898 aa28.57■■■□□ 2.16
RUNDC3A-201ENST00000225441 RANBP6O60518 1105 aaKnown RBP28.57■■■□□ 2.16
RUNDC3A-201ENST00000225441 SMC2O95347 1197 aa28.57■■■□□ 2.16
RUNDC3A-201ENST00000225441 MARCKSP29966 332 aaPredicted RBP28.57■■■□□ 2.16
RUNDC3A-201ENST00000225441 MYL5Q02045 173 aa28.57■■■□□ 2.16
RUNDC3A-201ENST00000225441 NCBP1Q09161 790 aaKnown RBP28.57■■■□□ 2.16
RUNDC3A-201ENST00000225441 ARID5BQ14865 1188 aa28.57■■■□□ 2.16
RUNDC3A-201ENST00000225441 SPTY2D1Q68D10 685 aaPredicted RBP28.57■■■□□ 2.16
RUNDC3A-201ENST00000225441 NOSTRINQ8IVI9 506 aa28.57■■■□□ 2.16
RUNDC3A-201ENST00000225441 KRI1Q8N9T8 703 aaKnown RBP28.57■■■□□ 2.16
RUNDC3A-201ENST00000225441 ERCC4Q92889 916 aaPredicted RBP28.57■■■□□ 2.16
RUNDC3A-201ENST00000225441 IGSF3O75054 1194 aa28.56■■■□□ 2.16
RUNDC3A-201ENST00000225441 CYP7A1P22680 504 aa28.56■■■□□ 2.16
RUNDC3A-201ENST00000225441 PRDX5P30044 214 aa28.56■■■□□ 2.16
RUNDC3A-201ENST00000225441 RILPL1Q5EBL4 403 aa28.56■■■□□ 2.16
RUNDC3A-201ENST00000225441 PPP4R3BQ5MIZ7 849 aa28.56■■■□□ 2.16
RUNDC3A-201ENST00000225441 ZNF579Q8NAF0 562 aaKnown RBP28.56■■■□□ 2.16
RUNDC3A-201ENST00000225441 SUPT20HQ8NEM7 779 aa28.56■■■□□ 2.16
RUNDC3A-201ENST00000225441 PHKBQ93100 1093 aa28.56■■■□□ 2.16
RUNDC3A-201ENST00000225441 MAST2Q6P0Q8 1798 aa28.56■■■□□ 2.16
RUNDC3A-201ENST00000225441 FANCCQ00597 558 aa28.55■■■□□ 2.16
RUNDC3A-201ENST00000225441 AIFM3Q96NN9 605 aa28.55■■■□□ 2.16
RUNDC3A-201ENST00000225441 FAM205AQ6ZU69 1335 aa28.55■■■□□ 2.16
RUNDC3A-201ENST00000225441 A0A087WWV3 80 aa28.55■■■□□ 2.16
RUNDC3A-201ENST00000225441 ERICH2A1L162 156 aa28.55■■■□□ 2.16
RUNDC3A-201ENST00000225441 DEXIO95424 95 aa28.55■■■□□ 2.16
RUNDC3A-201ENST00000225441 MMP1P03956 469 aa28.55■■■□□ 2.16
RUNDC3A-201ENST00000225441 KRBA2Q6ZNG9 492 aa28.55■■■□□ 2.16
RUNDC3A-201ENST00000225441 RTKN2Q8IZC4 609 aa28.55■■■□□ 2.16
RUNDC3A-201ENST00000225441 ZNF384Q8TF68 577 aa28.55■■■□□ 2.16
RUNDC3A-201ENST00000225441 NSUN4Q96CB9 384 aaKnown RBP28.55■■■□□ 2.16
RUNDC3A-201ENST00000225441 MECOMQ03112 1051 aa28.54■■■□□ 2.16
RUNDC3A-201ENST00000225441 DOK7Q18PE1 504 aa28.54■■■□□ 2.16
RUNDC3A-201ENST00000225441 TMED8Q6PL24 325 aaPredicted RBP28.54■■■□□ 2.16
RUNDC3A-201ENST00000225441 TMC6Q7Z403 805 aa28.54■■■□□ 2.16
RUNDC3A-201ENST00000225441 SLC26A6Q9BXS9 759 aa28.54■■■□□ 2.16
RUNDC3A-201ENST00000225441 SPON1Q9HCB6 807 aa28.54■■■□□ 2.16
RUNDC3A-201ENST00000225441 KCNH3Q9ULD8 1083 aa28.54■■■□□ 2.16
RUNDC3A-201ENST00000225441 CEP131Q9UPN4 1083 aa28.54■■■□□ 2.16
RUNDC3A-201ENST00000225441 WTAPQ15007 396 aa28.53■■■□□ 2.16
RUNDC3A-201ENST00000225441 RTN1Q16799 776 aa28.53■■■□□ 2.16
RUNDC3A-201ENST00000225441 SENP2Q9HC62 589 aa28.53■■■□□ 2.16
RUNDC3A-201ENST00000225441 G3V3G9 751 aa28.53■■■□□ 2.16
RUNDC3A-201ENST00000225441 DALRD3Q5D0E6 543 aaKnown RBP28.53■■■□□ 2.16
RUNDC3A-201ENST00000225441 DCAF8Q5TAQ9 597 aa28.53■■■□□ 2.16
RUNDC3A-201ENST00000225441 KANK3Q6NY19 840 aa28.53■■■□□ 2.16
RUNDC3A-201ENST00000225441 ADGRA1Q86SQ6 560 aa28.53■■■□□ 2.16
RUNDC3A-201ENST00000225441 ANAPC4Q9UJX5 808 aa28.53■■■□□ 2.16
RUNDC3A-201ENST00000225441 BRCA1P38398 1863 aaKnown RBP28.52■■■□□ 2.16
RUNDC3A-201ENST00000225441 BIN1O00499 593 aa28.52■■■□□ 2.16
RUNDC3A-201ENST00000225441 LDHBP07195 334 aaKnown RBP28.52■■■□□ 2.16
RUNDC3A-201ENST00000225441 SOGA3Q5TF21 947 aa28.52■■■□□ 2.16
RUNDC3A-201ENST00000225441 NKX2-3Q8TAU0 364 aa28.52■■■□□ 2.16
RUNDC3A-201ENST00000225441 TBC1D22AQ8WUA7 517 aa28.52■■■□□ 2.16
RUNDC3A-201ENST00000225441 ERO1AQ96HE7 468 aa28.52■■■□□ 2.16
RUNDC3A-201ENST00000225441 ARMT1Q9H993 441 aa28.52■■■□□ 2.16
RUNDC3A-201ENST00000225441 DACH1Q9UI36 760 aa28.52■■■□□ 2.16
RUNDC3A-201ENST00000225441 TDO2P48775 406 aa28.51■■■□□ 2.15
RUNDC3A-201ENST00000225441 CT47A1Q5JQC4 288 aaPredicted RBP28.51■■■□□ 2.15
RUNDC3A-201ENST00000225441 ARMCX5Q6P1M9 558 aa28.51■■■□□ 2.15
RUNDC3A-201ENST00000225441 TRIML1Q8N9V2 468 aa28.51■■■□□ 2.15
RUNDC3A-201ENST00000225441 CNNM3Q8NE01 707 aa28.51■■■□□ 2.15
RUNDC3A-201ENST00000225441 PSMD1Q99460 953 aa28.51■■■□□ 2.15
RUNDC3A-201ENST00000225441 ZMYND15Q9H091 742 aa28.51■■■□□ 2.15
RUNDC3A-201ENST00000225441 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP28.5■■■□□ 2.15
RUNDC3A-201ENST00000225441 USP27XA6NNY8 438 aa28.5■■■□□ 2.15
RUNDC3A-201ENST00000225441 PTPREP23469 700 aa28.5■■■□□ 2.15
RUNDC3A-201ENST00000225441 GTF2IP78347 998 aa28.5■■■□□ 2.15
RUNDC3A-201ENST00000225441 CTDSPL2Q05D32 466 aa28.5■■■□□ 2.15
RUNDC3A-201ENST00000225441 FCHSD1Q86WN1 690 aa28.5■■■□□ 2.15
RUNDC3A-201ENST00000225441 DZIP1Q86YF9 867 aaKnown RBP28.5■■■□□ 2.15
RUNDC3A-201ENST00000225441 MIGA1Q8NAN2 632 aa28.5■■■□□ 2.15
RUNDC3A-201ENST00000225441 SLC4A4Q9Y6R1 1079 aa28.5■■■□□ 2.15
RUNDC3A-201ENST00000225441 CCDC88AQ3V6T2 1871 aa28.5■■■□□ 2.15
RUNDC3A-201ENST00000225441 PCP11498 1178 aaKnown RBP28.5■■■□□ 2.15
RUNDC3A-201ENST00000225441 RXRAP19793 462 aa28.5■■■□□ 2.15
RUNDC3A-201ENST00000225441 NT5DC1Q5TFE4 455 aa28.5■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms