RNA–Protein interactions for RNA: ENSMUST00000005705.7

Trim28-201, Transcript of Transcription intermediary factor 1-beta, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim28, Length 3,245 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28-201ENSMUST00000005705 RargP18911 458 aaKnown RBP18.36■□□□□ 0.53
Trim28-201ENSMUST00000005705 Siah1aP61092 282 aa18.36■□□□□ 0.53
Trim28-201ENSMUST00000005705 Ica1lQ3TY65 431 aa18.36■□□□□ 0.53
Trim28-201ENSMUST00000005705 Skap2Q3UND0 358 aa18.36■□□□□ 0.53
Trim28-201ENSMUST00000005705 Myl6bQ8CI43 207 aa18.36■□□□□ 0.53
Trim28-201ENSMUST00000005705 Kcnq5Q9JK45 933 aa18.36■□□□□ 0.53
Trim28-201ENSMUST00000005705 Ssc5dQ8BV57 1371 aa18.36■□□□□ 0.53
Trim28-201ENSMUST00000005705 Stox1B2RQL2 990 aa18.35■□□□□ 0.53
Trim28-201ENSMUST00000005705 Asnsd1Q8BFS9 627 aa18.35■□□□□ 0.53
Trim28-201ENSMUST00000005705 Tc2nQ91XT6 489 aa18.35■□□□□ 0.53
Trim28-201ENSMUST00000005705 IkbkbO88351 757 aa18.35■□□□□ 0.53
Trim28-201ENSMUST00000005705 PsdQ5DTT2 1024 aa18.35■□□□□ 0.53
Trim28-201ENSMUST00000005705 Rab11fip4Q8BQP8 635 aa18.35■□□□□ 0.53
Trim28-201ENSMUST00000005705 Ccdc96Q9CR92 584 aa18.35■□□□□ 0.53
Trim28-201ENSMUST00000005705 Sall1Q9ER74 1322 aa18.35■□□□□ 0.53
Trim28-201ENSMUST00000005705 Foxo3Q9WVH4 672 aa18.35■□□□□ 0.53
Trim28-201ENSMUST00000005705 Eif6O55135 245 aa18.34■□□□□ 0.53
Trim28-201ENSMUST00000005705 PparaP23204 468 aa18.34■□□□□ 0.53
Trim28-201ENSMUST00000005705 Carmil2Q3V3V9 1296 aa18.34■□□□□ 0.53
Trim28-201ENSMUST00000005705 Mrps31Q61733 384 aaKnown RBP18.34■□□□□ 0.53
Trim28-201ENSMUST00000005705 Abca3Q8R420 1704 aa18.34■□□□□ 0.53
Trim28-201ENSMUST00000005705 Palm3A2TJV2 734 aa18.34■□□□□ 0.53
Trim28-201ENSMUST00000005705 Rfc1P35601 1131 aa18.34■□□□□ 0.53
Trim28-201ENSMUST00000005705 Nek1P51954 1203 aa18.34■□□□□ 0.53
Trim28-201ENSMUST00000005705 Snrpa1P57784 255 aaKnown RBP18.34■□□□□ 0.53
Trim28-201ENSMUST00000005705 Aak1Q3UHJ0 959 aa18.34■□□□□ 0.53
Trim28-201ENSMUST00000005705 Zc3h12cQ5DTV4 884 aa18.34■□□□□ 0.53
Trim28-201ENSMUST00000005705 Fchsd1Q6PFY1 688 aa18.34■□□□□ 0.53
Trim28-201ENSMUST00000005705 Lrrd1Q8C0R9 853 aa18.34■□□□□ 0.53
Trim28-201ENSMUST00000005705 Matr3Q8K310 846 aaKnown RBP18.34■□□□□ 0.53
Trim28-201ENSMUST00000005705 Smc1bQ920F6 1248 aa18.34■□□□□ 0.53
Trim28-201ENSMUST00000005705 CpdO89001 1377 aa18.34■□□□□ 0.53
Trim28-201ENSMUST00000005705 1700029H14RikE9PY36 240 aa18.34■□□□□ 0.53
Trim28-201ENSMUST00000005705 Nfil3O08750 462 aa18.34■□□□□ 0.53
Trim28-201ENSMUST00000005705 PpardP35396 440 aa18.34■□□□□ 0.53
Trim28-201ENSMUST00000005705 Srp68Q8BMA6 625 aaKnown RBP18.34■□□□□ 0.53
Trim28-201ENSMUST00000005705 Slc38a10Q5I012 1090 aa18.33■□□□□ 0.53
Trim28-201ENSMUST00000005705 IqcgQ80W32 419 aa18.33■□□□□ 0.53
Trim28-201ENSMUST00000005705 Igsf9bE9PZ19 1328 aa18.33■□□□□ 0.52
Trim28-201ENSMUST00000005705 ErmardE9Q048 622 aa18.33■□□□□ 0.52
Trim28-201ENSMUST00000005705 LbrQ3U9G9 626 aaKnown RBP18.33■□□□□ 0.52
Trim28-201ENSMUST00000005705 TxlnaQ6PAM1 554 aaKnown RBP18.33■□□□□ 0.52
Trim28-201ENSMUST00000005705 Tut1Q8R3F9 869 aa18.33■□□□□ 0.52
Trim28-201ENSMUST00000005705 Gm4340L7N2C4 268 aa18.32■□□□□ 0.52
Trim28-201ENSMUST00000005705 Capza3P70190 299 aa18.32■□□□□ 0.52
Trim28-201ENSMUST00000005705 Mum1l1Q4VA55 681 aa18.32■□□□□ 0.52
Trim28-201ENSMUST00000005705 Slitrk3Q810B9 980 aa18.32■□□□□ 0.52
Trim28-201ENSMUST00000005705 Klc3Q91W40 508 aa18.32■□□□□ 0.52
Trim28-201ENSMUST00000005705 Nwd2Q6P5U7 1742 aa18.32■□□□□ 0.52
Trim28-201ENSMUST00000005705 Tbc1d8bA3KGB4 1114 aa18.32■□□□□ 0.52
Trim28-201ENSMUST00000005705 Gcom1E9PZ54 550 aa18.32■□□□□ 0.52
Trim28-201ENSMUST00000005705 MycnP03966 462 aaKnown RBP18.32■□□□□ 0.52
Trim28-201ENSMUST00000005705 Mdh1P14152 334 aa18.32■□□□□ 0.52
Trim28-201ENSMUST00000005705 Dnajc5P60904 198 aa18.32■□□□□ 0.52
Trim28-201ENSMUST00000005705 Cct6aP80317 531 aaKnown RBP18.32■□□□□ 0.52
Trim28-201ENSMUST00000005705 Plbd2Q3TCN2 594 aa18.32■□□□□ 0.52
Trim28-201ENSMUST00000005705 MyzapQ3UIJ9 466 aa18.32■□□□□ 0.52
Trim28-201ENSMUST00000005705 Sf3b2Q3UJB0 878 aaKnown RBP18.32■□□□□ 0.52
Trim28-201ENSMUST00000005705 Eme2Q56A04 373 aa18.32■□□□□ 0.52
Trim28-201ENSMUST00000005705 Ift88Q61371 824 aa18.32■□□□□ 0.52
Trim28-201ENSMUST00000005705 Exoc8Q6PGF7 716 aa18.32■□□□□ 0.52
Trim28-201ENSMUST00000005705 Tbc1d5Q80XQ2 815 aa18.32■□□□□ 0.52
Trim28-201ENSMUST00000005705 Hpcal4Q8BGZ1 191 aa18.32■□□□□ 0.52
Trim28-201ENSMUST00000005705 Fam177a1Q8BR63 207 aa18.32■□□□□ 0.52
Trim28-201ENSMUST00000005705 Efcab8Q8C9R9 203 aa18.32■□□□□ 0.52
Trim28-201ENSMUST00000005705 Dact1Q8R4A3 778 aa18.32■□□□□ 0.52
Trim28-201ENSMUST00000005705 Nek3Q9R0A5 511 aa18.32■□□□□ 0.52
Trim28-201ENSMUST00000005705 Gm43738A0A0G2JEA5 862 aa18.32■□□□□ 0.52
Trim28-201ENSMUST00000005705 Enc1O35709 589 aa18.32■□□□□ 0.52
Trim28-201ENSMUST00000005705 Ric8aQ3TIR3 530 aa18.32■□□□□ 0.52
Trim28-201ENSMUST00000005705 Ehmt1Q5DW34 1296 aa18.32■□□□□ 0.52
Trim28-201ENSMUST00000005705 Lrrc15Q80X72 579 aa18.32■□□□□ 0.52
Trim28-201ENSMUST00000005705 Ppfibp1Q8C8U0 969 aaKnown RBP18.32■□□□□ 0.52
Trim28-201ENSMUST00000005705 Bicdl2Q8CHW5 507 aa18.32■□□□□ 0.52
Trim28-201ENSMUST00000005705 FliiQ9JJ28 1271 aa18.32■□□□□ 0.52
Trim28-201ENSMUST00000005705 Nck2O55033 380 aa18.31■□□□□ 0.52
Trim28-201ENSMUST00000005705 Rad23aP54726 363 aa18.31■□□□□ 0.52
Trim28-201ENSMUST00000005705 Ctnna3Q65CL1 895 aa18.31■□□□□ 0.52
Trim28-201ENSMUST00000005705 Ccdc93Q7TQK5 629 aa18.31■□□□□ 0.52
Trim28-201ENSMUST00000005705 Pus7lQ8CE46 702 aa18.31■□□□□ 0.52
Trim28-201ENSMUST00000005705 AmfrQ9R049 643 aa18.31■□□□□ 0.52
Trim28-201ENSMUST00000005705 Myh1Q5SX40 1942 aa18.31■□□□□ 0.52
Trim28-201ENSMUST00000005705 Setdb1O88974 1307 aa18.31■□□□□ 0.52
Trim28-201ENSMUST00000005705 Gm42641I6L9G2 585 aa18.31■□□□□ 0.52
Trim28-201ENSMUST00000005705 Pth1rP41593 591 aa18.31■□□□□ 0.52
Trim28-201ENSMUST00000005705 Ddb1Q3U1J4 1140 aaKnown RBP18.31■□□□□ 0.52
Trim28-201ENSMUST00000005705 AtripQ8BMG1 785 aa18.31■□□□□ 0.52
Trim28-201ENSMUST00000005705 Olfm5Q8BU90 496 aa18.31■□□□□ 0.52
Trim28-201ENSMUST00000005705 Alx1Q8C8B0 326 aa18.31■□□□□ 0.52
Trim28-201ENSMUST00000005705 Srgap2Q91Z67 1071 aa18.31■□□□□ 0.52
Trim28-201ENSMUST00000005705 NenfQ9CQ45 171 aa18.31■□□□□ 0.52
Trim28-201ENSMUST00000005705 RarsQ9D0I9 660 aaKnown RBP18.31■□□□□ 0.52
Trim28-201ENSMUST00000005705 Med23Q80YQ2 1367 aa18.31■□□□□ 0.52
Trim28-201ENSMUST00000005705 Arhgef2Q60875 985 aa18.3■□□□□ 0.52
Trim28-201ENSMUST00000005705 Ppm1eQ80TL0 749 aa18.3■□□□□ 0.52
Trim28-201ENSMUST00000005705 Hps6Q8BLY7 805 aa18.3■□□□□ 0.52
Trim28-201ENSMUST00000005705 Rsrc2A2RTL5 376 aaKnown RBP18.3■□□□□ 0.52
Trim28-201ENSMUST00000005705 Stag2O35638 1231 aa18.3■□□□□ 0.52
Trim28-201ENSMUST00000005705 Sox5P35710 763 aa18.3■□□□□ 0.52
Trim28-201ENSMUST00000005705 Abcd1P48410 736 aa18.3■□□□□ 0.52
Retrieved 100 of 22,080 RNA–protein pairs in 51.5 ms