RNA–Protein interactions for RNA: ENSMUST00000041643.3

Pcif1-201, Transcript of Phosphorylated CTD-interacting factor 1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Pcif1, Length 5,772 nt, Biotype protein coding, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Pcif1-201ENSMUST00000041643 Pkd1O08852 4293 aa5.51□□□□□ -1.53
Pcif1-201ENSMUST00000041643 Gm18596A0A1W2P860 280 aa5.51□□□□□ -1.53
Pcif1-201ENSMUST00000041643 Gm19668J3QMD1 248 aa5.5□□□□□ -1.53
Pcif1-201ENSMUST00000041643 Dnah2P0C6F1 4456 aa5.5□□□□□ -1.53
Pcif1-201ENSMUST00000041643 Krtap1-5A2A590 122 aa5.37□□□□□ -1.55
Pcif1-201ENSMUST00000041643 SacsQ9JLC8 4582 aa5.34□□□□□ -1.55
Pcif1-201ENSMUST00000041643 LorP18165 486 aa5.3□□□□□ -1.56
Pcif1-201ENSMUST00000041643 Lrp1bQ9JI18 4599 aa5.29□□□□□ -1.56
Pcif1-201ENSMUST00000041643 Lce1mQ9CR91 182 aa5.28□□□□□ -1.56
Pcif1-201ENSMUST00000041643 Fras1Q80T14 4010 aa5.27□□□□□ -1.57
Pcif1-201ENSMUST00000041643 Hectd4E9Q2E4 4418 aa5.25□□□□□ -1.57
Pcif1-201ENSMUST00000041643 Dnah7cA0A087WR13 4024 aa5.21□□□□□ -1.58
Pcif1-201ENSMUST00000041643 Fat1A0A1L1SQU7 4645 aa5.21□□□□□ -1.58
Pcif1-201ENSMUST00000041643 Krtap1-4Q3V2D6 188 aa5.19□□□□□ -1.58
Pcif1-201ENSMUST00000041643 Krtap19-9aF8WH65 55 aa5.19□□□□□ -1.58
Pcif1-201ENSMUST00000041643 Dnah7aE9Q0T8 4024 aa5.19□□□□□ -1.58
Pcif1-201ENSMUST00000041643 Fat3Q8BNA6 4555 aa5.15□□□□□ -1.58
Pcif1-201ENSMUST00000041643 Ryr1E9PZQ0 5035 aa5.15□□□□□ -1.58
Pcif1-201ENSMUST00000041643 Sprr2a3Q4KL71 83 aa5.15□□□□□ -1.58
Pcif1-201ENSMUST00000041643 Sprr2a1Q9CQK8 83 aa5.15□□□□□ -1.58
Pcif1-201ENSMUST00000041643 Ryr3A2AGL3 4863 aa5.13□□□□□ -1.59
Pcif1-201ENSMUST00000041643 Gm19402J3QJV4 266 aa5.13□□□□□ -1.59
Pcif1-201ENSMUST00000041643 Dnah8Q91XQ0 4731 aa5.1□□□□□ -1.59
Pcif1-201ENSMUST00000041643 Fat2Q5F226 4351 aa5.08□□□□□ -1.6
Pcif1-201ENSMUST00000041643 Mycbp2Q7TPH6 4711 aa5.08□□□□□ -1.6
Pcif1-201ENSMUST00000041643 Ryr2E9Q401 4966 aaKnown RBP5.05□□□□□ -1.6
Pcif1-201ENSMUST00000041643 Krtap12-1Q9Z287 130 aa5.04□□□□□ -1.6
Pcif1-201ENSMUST00000041643 Krtap8-1O08633 61 aa4.99□□□□□ -1.61
Pcif1-201ENSMUST00000041643 Krtap16-3Q8C1I6 86 aa4.98□□□□□ -1.61
Pcif1-201ENSMUST00000041643 Krtap19-3Q925H6 87 aa4.96□□□□□ -1.62
Pcif1-201ENSMUST00000041643 Lrp1Q91ZX7 4545 aaKnown RBP4.96□□□□□ -1.62
Pcif1-201ENSMUST00000041643 Prm1P02319 51 aa4.95□□□□□ -1.62
Pcif1-201ENSMUST00000041643 Vps13bQ80TY5 3993 aa4.93□□□□□ -1.62
Pcif1-201ENSMUST00000041643 Pkhd1l1Q80ZA4 4249 aa4.93□□□□□ -1.62
Pcif1-201ENSMUST00000041643 4933428G20RikQ9D3X4 101 aa4.9□□□□□ -1.63
Pcif1-201ENSMUST00000041643 Gm6358A0A087WPH4 74 aa4.89□□□□□ -1.63
Pcif1-201ENSMUST00000041643 Herc2Q4U2R1 4836 aa4.89□□□□□ -1.63
Pcif1-201ENSMUST00000041643 Krtap19-9bQ99NG9 58 aa4.88□□□□□ -1.63
Pcif1-201ENSMUST00000041643 Krtap19-1Q925H2 87 aa4.87□□□□□ -1.63
Pcif1-201ENSMUST00000041643 Krtap7-1Q9D3I6 87 aa4.83□□□□□ -1.64
Pcif1-201ENSMUST00000041643 Pkhd1E9PZ36 4059 aa4.81□□□□□ -1.64
Pcif1-201ENSMUST00000041643 Krtap9-5A2A5X3 358 aa4.8□□□□□ -1.64
Pcif1-201ENSMUST00000041643 Gm7735D3YX18 52 aa4.8□□□□□ -1.64
Pcif1-201ENSMUST00000041643 Kiaa1109A2AAE1 5005 aa4.78□□□□□ -1.64
Pcif1-201ENSMUST00000041643 Sprr2kO70562 68 aa4.77□□□□□ -1.65
Pcif1-201ENSMUST00000041643 Gm9789Q8BIG3 52 aa4.76□□□□□ -1.65
Pcif1-201ENSMUST00000041643 Krtap1-3A2A588 173 aa4.75□□□□□ -1.65
Pcif1-201ENSMUST00000041643 Lrp2A2ARV4 4660 aa4.74□□□□□ -1.65
Pcif1-201ENSMUST00000041643 Dnhd1D3Z2X2 4750 aa4.73□□□□□ -1.65
Pcif1-201ENSMUST00000041643 Birc6O88738 4882 aa4.72□□□□□ -1.65
Pcif1-201ENSMUST00000041643 Kmt2cQ8BRH4 4903 aa4.66□□□□□ -1.66
Pcif1-201ENSMUST00000041643 Herc1E9PZP8 4859 aa4.65□□□□□ -1.66
Pcif1-201ENSMUST00000041643 HydinQ80W93 5154 aa4.61□□□□□ -1.67
Pcif1-201ENSMUST00000041643 Krtap19-2Q925I0 141 aa4.55□□□□□ -1.68
Pcif1-201ENSMUST00000041643 Lce1jD3YUU5 139 aa4.52□□□□□ -1.69
Pcif1-201ENSMUST00000041643 Abca13Q5SSE9 5034 aa4.49□□□□□ -1.69
Pcif1-201ENSMUST00000041643 Mt2P02798 61 aa4.49□□□□□ -1.69
Pcif1-201ENSMUST00000041643 Gm10061D3Z714 54 aa4.48□□□□□ -1.69
Pcif1-201ENSMUST00000041643 Sprr2gO70558 76 aa4.48□□□□□ -1.69
Pcif1-201ENSMUST00000041643 Gm11569B1AQB1 180 aa4.41□□□□□ -1.7
Pcif1-201ENSMUST00000041643 Krtap22-2J3QNX6 67 aa4.41□□□□□ -1.7
Pcif1-201ENSMUST00000041643 Lce3bQ9CQM7 98 aa4.4□□□□□ -1.7
Pcif1-201ENSMUST00000041643 Gm10272F7CZ33 110 aa4.38□□□□□ -1.71
Pcif1-201ENSMUST00000041643 PcloQ9QYX7 5068 aa4.36□□□□□ -1.71
Pcif1-201ENSMUST00000041643 Gm38119A0A0A6YX29 146 aa4.33□□□□□ -1.72
Pcif1-201ENSMUST00000041643 4932415D10RikA0A1W2P6U8 4986 aa4.25□□□□□ -1.73
Pcif1-201ENSMUST00000041643 Lce3cQ91V05 98 aa4.24□□□□□ -1.73
Pcif1-201ENSMUST00000041643 Lce1iQ9D6P5 149 aa4.19□□□□□ -1.74
Pcif1-201ENSMUST00000041643 2310046K23RikA0A0A6YVW6 87 aa4.19□□□□□ -1.74
Pcif1-201ENSMUST00000041643 Sprr2iO70560 76 aa4.18□□□□□ -1.74
Pcif1-201ENSMUST00000041643 Krtap4-2B1AQ85 167 aa4.18□□□□□ -1.74
Pcif1-201ENSMUST00000041643 ZanO88799 5376 aa4.18□□□□□ -1.74
Pcif1-201ENSMUST00000041643 Fat4Q2PZL6 4981 aa4.15□□□□□ -1.75
Pcif1-201ENSMUST00000041643 Lce1a2Q9D1K4 149 aa4.13□□□□□ -1.75
Pcif1-201ENSMUST00000041643 Lce3dE9Q8V1 98 aa4.12□□□□□ -1.75
Pcif1-201ENSMUST00000041643 Lce3eF8VQJ0 98 aa4.12□□□□□ -1.75
Pcif1-201ENSMUST00000041643 Lce3fQ6PAI4 98 aa4.12□□□□□ -1.75
Pcif1-201ENSMUST00000041643 Krtap4-6Q3V4B7 195 aa4.11□□□□□ -1.75
Pcif1-201ENSMUST00000041643 Gm10100J3QK64 120 aa4.1□□□□□ -1.75
Pcif1-201ENSMUST00000041643 Lce1gQ9D195 139 aa4.09□□□□□ -1.75
Pcif1-201ENSMUST00000041643 Ush2AQ2QI47 5193 aa4.08□□□□□ -1.76
Pcif1-201ENSMUST00000041643 Mt4P47945 62 aa4.07□□□□□ -1.76
Pcif1-201ENSMUST00000041643 Krtap17-1A2A5X6 109 aa4.06□□□□□ -1.76
Pcif1-201ENSMUST00000041643 Krtap9-3Q3V2C1 136 aa4.04□□□□□ -1.76
Pcif1-201ENSMUST00000041643 Ubr4A2AN08 5180 aa4□□□□□ -1.77
Pcif1-201ENSMUST00000041643 Gm10142J3KMP7 120 aa4□□□□□ -1.77
Pcif1-201ENSMUST00000041643 Lce3aQ497I5 98 aa3.99□□□□□ -1.77
Pcif1-201ENSMUST00000041643 Lce1bQ9D149 137 aa3.99□□□□□ -1.77
Pcif1-201ENSMUST00000041643 Lce1fB9EJP6 147 aa3.99□□□□□ -1.77
Pcif1-201ENSMUST00000041643 Lce1cQ9D1C5 147 aa3.99□□□□□ -1.77
Pcif1-201ENSMUST00000041643 Lce1lQ9D1G7 135 aa3.99□□□□□ -1.77
Pcif1-201ENSMUST00000041643 Lce1dQ9D731 133 aa3.99□□□□□ -1.77
Pcif1-201ENSMUST00000041643 Krtap4-1Q3UUY3 169 aa3.98□□□□□ -1.77
Pcif1-201ENSMUST00000041643 Lce1hQ9D6R3 140 aa3.97□□□□□ -1.77
Pcif1-201ENSMUST00000041643 Gm11596B1AQB0 205 aa3.96□□□□□ -1.78
Pcif1-201ENSMUST00000041643 Hmcn2A2AJ76 5100 aa3.92□□□□□ -1.78
Pcif1-201ENSMUST00000041643 Rnf213E9Q555 5152 aaKnown RBP3.89□□□□□ -1.79
Pcif1-201ENSMUST00000041643 Gm11564A2A4L9 201 aa3.88□□□□□ -1.79
Pcif1-201ENSMUST00000041643 Gm11563B1AQ90 168 aa3.88□□□□□ -1.79
Pcif1-201ENSMUST00000041643 Gm11595B1AQA7 289 aa3.88□□□□□ -1.79
Retrieved 100 of 22,080 RNA–protein pairs in 92.5 ms