RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 PDE4AP27815 886 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 EVCP57679 992 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 TMTC4Q5T4D3 741 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 FBXW10Q5XX13 1052 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 POLR3CQ9BUI4 534 aaPredicted RBP3.99□□□□□ -1.77
SCN1A-221ENST00000641996 OTUD6AQ7L8S5 288 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 STK32CQ86UX6 486 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 ARID3BQ8IVW6 561 aaPredicted RBP3.99□□□□□ -1.77
SCN1A-221ENST00000641996 CCDC150Q8NCX0 1101 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 DBNDD1Q9H9R9 158 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 PDRG1Q9NUG6 133 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 NINLQ9Y2I6 1382 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 CDC27P30260 824 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 MAPK8P45983 427 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 OLR1P78380 273 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 NUTM1Q86Y26 1132 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 NR1H4Q96RI1 486 aaPredicted RBP3.98□□□□□ -1.77
SCN1A-221ENST00000641996 SPATA7Q9P0W8 599 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 F8VZ95 297 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 ZBTB43O43298 467 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 HNRNPCP07910 306 aaKnown RBP eCLIP3.98□□□□□ -1.77
SCN1A-221ENST00000641996 NLRP14Q86W24 1093 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 DTNBP1Q96EV8 351 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 TSC22D3Q99576 134 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 MAP3K13O43283 966 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 GTPBP6O43824 516 aaPredicted RBP3.98□□□□□ -1.77
SCN1A-221ENST00000641996 SSBP05455 408 aaKnown RBP eCLIP3.98□□□□□ -1.77
SCN1A-221ENST00000641996 CKAP2LQ8IYA6 745 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 CASP10Q92851 521 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 SCNN1BP51168 640 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 DAB2P98082 770 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 ASPHQ12797 758 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 SPG7Q9UQ90 795 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 ATF5Q9Y2D1 282 aaPredicted RBP3.98□□□□□ -1.77
SCN1A-221ENST00000641996 PPP1R7Q15435 360 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 USP48Q86UV5 1035 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 ITPRIPQ8IWB1 547 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 TRIM22Q8IYM9 498 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 OSBPL2Q9H1P3 480 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 GSTTP1A0A1W2PQM5 241 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 F6X3S4 739 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 CAPN1P07384 714 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 SERPINB4P48594 390 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 ELF2Q15723 593 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 ST7Q9NRC1 585 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 SNRKQ9NRH2 765 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 JAG2Q9Y219 1238 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 BICDL2A1A5D9 508 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 DDX42Q86XP3 938 aaKnown RBP eCLIP3.98□□□□□ -1.77
SCN1A-221ENST00000641996 JAKMIP2Q96AA8 810 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 DDX21Q9NR30 783 aaKnown RBP eCLIP3.98□□□□□ -1.77
SCN1A-221ENST00000641996 COMMD8Q9NX08 183 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 ANKIB1Q9P2G1 1089 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 SCN8AQ9UQD0 1980 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 VPS37CA5D8V6 355 aaPredicted RBP3.98□□□□□ -1.77
SCN1A-221ENST00000641996 LAMC2Q13753 1193 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 NKX1-1Q15270 411 aaPredicted RBP3.98□□□□□ -1.77
SCN1A-221ENST00000641996 THOC7Q6I9Y2 204 aaKnown RBP3.98□□□□□ -1.77
SCN1A-221ENST00000641996 TMEM87BQ96K49 555 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 C2orf49Q9BVC5 232 aaPredicted RBP3.98□□□□□ -1.77
SCN1A-221ENST00000641996 TDRD6O60522 2096 aaKnown RBP3.98□□□□□ -1.77
SCN1A-221ENST00000641996 MYO1CO00159 1063 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 GFPT2O94808 682 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 LDHBP07195 334 aaKnown RBP3.98□□□□□ -1.77
SCN1A-221ENST00000641996 CLTAP09496 248 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 MTX1Q13505 466 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 RAPGEF1Q13905 1077 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 KIRREL3Q8IZU9 778 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 MTMR8Q96EF0 704 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 CNGB3Q9NQW8 809 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 MCM8Q9UJA3 840 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 URI1O94763 535 aaPredicted RBP3.98□□□□□ -1.77
SCN1A-221ENST00000641996 GCFC2P16383 781 aaKnown RBP3.98□□□□□ -1.77
SCN1A-221ENST00000641996 KRT4P19013 534 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 TPD52L1Q16890 204 aaPredicted RBP3.98□□□□□ -1.77
SCN1A-221ENST00000641996 TRIML2Q8N7C3 387 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 KIF1BPQ96EK5 621 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 UQCC2Q9BRT2 126 aa3.98□□□□□ -1.77
SCN1A-221ENST00000641996 TUBA3CQ13748 450 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 EIF4ENIF1Q9NRA8 985 aaKnown RBP3.97□□□□□ -1.77
SCN1A-221ENST00000641996 EIF2B4Q9UI10 523 aaKnown RBP3.97□□□□□ -1.77
SCN1A-221ENST00000641996 BLOC1S6Q9UL45 172 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 SYNRGQ9UMZ2 1314 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 IDH1O75874 414 aaKnown RBP3.97□□□□□ -1.77
SCN1A-221ENST00000641996 ALOX15P16050 662 aaPredicted RBP3.97□□□□□ -1.77
SCN1A-221ENST00000641996 NEK9Q8TD19 979 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 SIKE1Q9BRV8 207 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 SPTBP11277 2137 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 SCG2P13521 617 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 LIG3P49916 1009 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 C6orf118Q5T5N4 469 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 IL17RAQ96F46 866 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 TACO1Q9BSH4 297 aaKnown RBP3.97□□□□□ -1.77
SCN1A-221ENST00000641996 TRPV6Q9H1D0 765 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 ICE1Q9Y2F5 2266 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 AP1B1Q10567 949 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 PUM3Q15397 648 aaKnown RBP3.97□□□□□ -1.77
SCN1A-221ENST00000641996 LRSAM1Q6UWE0 723 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 OR8H2Q8N162 312 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 ANKRD13CQ8N6S4 541 aa3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms