RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 XPO4Q9C0E2 1151 aaKnown RBP5.17□□□□□ -1.58
SCN1A-220ENST00000641603 RBM8AQ9Y5S9 174 aaKnown RBP5.17□□□□□ -1.58
SCN1A-220ENST00000641603 SLFN14P0C7P3 912 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 CNNM4Q6P4Q7 775 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 DHX32Q7L7V1 743 aaKnown RBP5.17□□□□□ -1.58
SCN1A-220ENST00000641603 CATIPQ7Z7H3 387 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 PAF1Q8N7H5 531 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 MSANTD4Q8NCY6 345 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 GPT2Q8TD30 523 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 NRDE2Q9H7Z3 1164 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 DYNC1LI1Q9Y6G9 523 aaKnown RBP5.17□□□□□ -1.58
SCN1A-220ENST00000641603 IQGAP2Q13576 1575 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 RPS6KA5O75582 802 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 CSB-PGBD3P0DP91 1061 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 ACBD5Q5T8D3 534 aaPredicted RBP5.17□□□□□ -1.58
SCN1A-220ENST00000641603 AIDAQ96BJ3 306 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 PAK1Q13153 545 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 HHATQ5VTY9 493 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 CCDC28BQ9BUN5 200 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 C10orf88Q9H8K7 445 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 SEC63Q9UGP8 760 aaKnown RBP5.17□□□□□ -1.58
SCN1A-220ENST00000641603 PYCARDQ9ULZ3 195 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 ZNF213O14771 459 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 HOXB7P09629 217 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 RPL13P26373 211 aaKnown RBP5.17□□□□□ -1.58
SCN1A-220ENST00000641603 ADCY2Q08462 1091 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 MAP3K12Q12852 859 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 TRMT2AQ8IZ69 625 aaKnown RBP5.17□□□□□ -1.58
SCN1A-220ENST00000641603 KLHL29Q96CT2 875 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 KIF2CQ99661 725 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 PRM3Q9NNZ6 103 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 MRGBPQ9NV56 204 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 EIF3DO15371 548 aaKnown RBP eCLIP5.17□□□□□ -1.583e-6■■□□□ 11.9
SCN1A-220ENST00000641603 PHBP35232 272 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 RPS6KA1Q15418 735 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 KMT5BQ4FZB7 885 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 FAM129AQ9BZQ8 928 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 PARVBQ9HBI1 364 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 NCOA3Q9Y6Q9 1424 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 CCDC188H7C350 402 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 EEF1GP26641 437 aaKnown RBP5.17□□□□□ -1.58
SCN1A-220ENST00000641603 SMTNP53814 917 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 GRAMD4Q6IC98 578 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 HELLSQ9NRZ9 838 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 SEPT11Q9NVA2 429 aaKnown RBP5.17□□□□□ -1.58
SCN1A-220ENST00000641603 PTPDC1A2A3K4 754 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 GNAT2P19087 354 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 TRHP20396 242 aaPredicted RBP5.17□□□□□ -1.58
SCN1A-220ENST00000641603 CMA1P23946 247 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 HSPA9P38646 679 aaKnown RBP5.17□□□□□ -1.58
SCN1A-220ENST00000641603 ANO1Q5XXA6 986 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 MRPL40Q9NQ50 206 aaKnown RBP5.17□□□□□ -1.58
SCN1A-220ENST00000641603 ZRANB1Q9UGI0 708 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 ZRANB2O95218 330 aaKnown RBP eCLIP5.17□□□□□ -1.58
SCN1A-220ENST00000641603 KRT13P13646 458 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 TEDDM1Q5T9Z0 273 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 PPP1R14BQ96C90 147 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 L2HGDHQ9H9P8 463 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 SBNO2Q9Y2G9 1366 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 A0A1B0GVL5 298 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 SNUPNO95149 360 aaKnown RBP5.16□□□□□ -1.58
SCN1A-220ENST00000641603 PCYT1AP49585 367 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 MAP3K7CLP57077 242 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 FLIIQ13045 1269 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 MRPL50Q8N5N7 158 aaKnown RBP5.16□□□□□ -1.58
SCN1A-220ENST00000641603 IFIH1Q9BYX4 1025 aaKnown RBP5.16□□□□□ -1.58
SCN1A-220ENST00000641603 GLT8D2Q9H1C3 349 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 TMEM60Q9H2L4 133 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 PPCSQ9HAB8 311 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 UBN2Q6ZU65 1347 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 LRIG3Q6UXM1 1119 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 GRID2IPA4D2P6 1211 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 NOP14P78316 857 aaKnown RBP5.16□□□□□ -1.58
SCN1A-220ENST00000641603 DHX9Q08211 1270 aaKnown RBP5.16□□□□□ -1.58
SCN1A-220ENST00000641603 MCMDC2Q4G0Z9 681 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 VSTM4Q8IW00 320 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 GGNBP2Q9H3C7 697 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 ATP6V0A4Q9HBG4 840 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 ZC4H2Q9NQZ6 224 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 PACSIN2Q9UNF0 486 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-220ENST00000641603 CLTAP09496 248 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 RPS6KB1P23443 525 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 BICD1Q96G01 975 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 BICC1Q9H694 974 aaKnown RBP5.16□□□□□ -1.58
SCN1A-220ENST00000641603 DISP3Q9P2K9 1392 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 LRRIQ3A6PVS8 624 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-220ENST00000641603 PSMC4P43686 418 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 RIPPLY1Q0D2K3 151 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 CCDC93Q567U6 631 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 PPP4R3AQ6IN85 833 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 HEATR3Q7Z4Q2 680 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 ALG1Q9BT22 464 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 A1CFQ9NQ94 594 aaKnown RBP5.16□□□□□ -1.58
SCN1A-220ENST00000641603 INTS9Q9NV88 658 aaKnown RBP5.16□□□□□ -1.58
SCN1A-220ENST00000641603 LIN7AO14910 233 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-220ENST00000641603 UQCRFS1P1P0C7P4 283 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 IFT88Q13099 833 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 TNIP1Q15025 636 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 C6orf118Q5T5N4 469 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 NLRP7Q8WX94 980 aa5.16□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms