RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 WDR18Q9BV38 432 aa21.89■■□□□ 1.09
CLN3-259ENST00000637551 AS3MTQ9HBK9 375 aa21.89■■□□□ 1.09
CLN3-259ENST00000637551 RNF186Q9NXI6 227 aa21.89■■□□□ 1.09
CLN3-259ENST00000637551 LOC285556D6RIA3 1793 aa21.89■■□□□ 1.09
CLN3-259ENST00000637551 TRIM6-TRIM34B2RNG4 842 aa21.88■■□□□ 1.09
CLN3-259ENST00000637551 CCDC17Q96LX7 622 aa21.88■■□□□ 1.09
CLN3-259ENST00000637551 ZNF287Q9HBT7 754 aa21.88■■□□□ 1.09
CLN3-259ENST00000637551 SLC45A1Q9Y2W3 748 aa21.88■■□□□ 1.09
CLN3-259ENST00000637551 AFG3L2Q9Y4W6 797 aa21.88■■□□□ 1.09
CLN3-259ENST00000637551 A0A0G2JLL6 359 aaPredicted RBP21.87■■□□□ 1.09
CLN3-259ENST00000637551 USP17L5A8MUK1 530 aa21.87■■□□□ 1.09
CLN3-259ENST00000637551 PLCD1P51178 756 aa21.87■■□□□ 1.09
CLN3-259ENST00000637551 SLFNL1Q499Z3 407 aa21.87■■□□□ 1.09
CLN3-259ENST00000637551 MCMDC2Q4G0Z9 681 aa21.87■■□□□ 1.09
CLN3-259ENST00000637551 FASTKD5Q7L8L6 764 aaKnown RBP21.87■■□□□ 1.09
CLN3-259ENST00000637551 PRRT2Q7Z6L0 340 aaPredicted RBP21.87■■□□□ 1.09
CLN3-259ENST00000637551 CCL15-CCL14A0A0B4J2E2 113 aa21.86■■□□□ 1.09
CLN3-259ENST00000637551 M0R2C6 588 aa21.86■■□□□ 1.09
CLN3-259ENST00000637551 PRKAB2O43741 272 aa21.86■■□□□ 1.09
CLN3-259ENST00000637551 CHGBP05060 677 aa21.86■■□□□ 1.09
CLN3-259ENST00000637551 ALX1Q15699 326 aa21.86■■□□□ 1.09
CLN3-259ENST00000637551 CCL15Q16663 113 aa21.86■■□□□ 1.09
CLN3-259ENST00000637551 C16orf86Q6ZW13 317 aa21.86■■□□□ 1.09
CLN3-259ENST00000637551 ANKRD23Q86SG2 305 aa21.86■■□□□ 1.09
CLN3-259ENST00000637551 PROCA1Q8NCQ7 364 aaPredicted RBP21.86■■□□□ 1.09
CLN3-259ENST00000637551 CNKSR2Q8WXI2 1034 aa21.86■■□□□ 1.09
CLN3-259ENST00000637551 BRI3BPQ8WY22 251 aa21.86■■□□□ 1.09
CLN3-259ENST00000637551 CCDC136Q96JN2 1154 aa21.86■■□□□ 1.09
CLN3-259ENST00000637551 ZBTB21Q9ULJ3 1066 aa21.86■■□□□ 1.09
CLN3-259ENST00000637551 ZHX2Q9Y6X8 837 aa21.86■■□□□ 1.09
CLN3-259ENST00000637551 RAD50Q92878 1312 aa21.85■■□□□ 1.09
CLN3-259ENST00000637551 USP17L12C9JPN9 530 aa21.85■■□□□ 1.09
CLN3-259ENST00000637551 USP17L21D6R901 530 aa21.85■■□□□ 1.09
CLN3-259ENST00000637551 SDSP20132 328 aa21.85■■□□□ 1.09
CLN3-259ENST00000637551 SHMT1P34896 483 aa21.85■■□□□ 1.09
CLN3-259ENST00000637551 NT5C2P49902 561 aa21.85■■□□□ 1.09
CLN3-259ENST00000637551 CERKLQ49MI3 558 aaPredicted RBP21.85■■□□□ 1.09
CLN3-259ENST00000637551 CTR9Q6PD62 1173 aa21.85■■□□□ 1.09
CLN3-259ENST00000637551 ZNF280CQ8ND82 737 aa21.85■■□□□ 1.09
CLN3-259ENST00000637551 FAM196BA6NMK8 535 aa21.84■■□□□ 1.09
CLN3-259ENST00000637551 IGF2BP3O00425 579 aaKnown RBP eCLIP21.84■■□□□ 1.09
CLN3-259ENST00000637551 TRPA1O75762 1119 aa21.84■■□□□ 1.09
CLN3-259ENST00000637551 MKRN3Q13064 507 aaKnown RBP21.84■■□□□ 1.09
CLN3-259ENST00000637551 SH3D19Q5HYK7 790 aa21.84■■□□□ 1.09
CLN3-259ENST00000637551 CTU1Q7Z7A3 348 aaKnown RBP21.84■■□□□ 1.09
CLN3-259ENST00000637551 RILPL2Q969X0 211 aa21.84■■□□□ 1.09
CLN3-259ENST00000637551 CABP5Q9NP86 173 aa21.84■■□□□ 1.09
CLN3-259ENST00000637551 GREB1LQ9C091 1923 aaPredicted RBP21.84■■□□□ 1.09
CLN3-259ENST00000637551 C19orf81C9J6K1 198 aa21.83■■□□□ 1.09
CLN3-259ENST00000637551 TDO2P48775 406 aa21.83■■□□□ 1.09
CLN3-259ENST00000637551 IFNL3Q8IZI9 196 aa21.83■■□□□ 1.09
CLN3-259ENST00000637551 PTPN18Q99952 460 aa21.83■■□□□ 1.09
CLN3-259ENST00000637551 EPB41L4AQ9HCS5 686 aaPredicted RBP21.83■■□□□ 1.09
CLN3-259ENST00000637551 DIAPH3Q9NSV4 1193 aa21.83■■□□□ 1.09
CLN3-259ENST00000637551 CCDC171Q6TFL3 1326 aa21.82■■□□□ 1.08
CLN3-259ENST00000637551 SLC3A2P08195 630 aaKnown RBP21.82■■□□□ 1.08
CLN3-259ENST00000637551 RRP1BQ14684 758 aaKnown RBP21.82■■□□□ 1.08
CLN3-259ENST00000637551 ABCB5Q2M3G0 1257 aa21.82■■□□□ 1.08
CLN3-259ENST00000637551 TMEM179Q6ZVK1 233 aa21.82■■□□□ 1.08
CLN3-259ENST00000637551 SEC62Q99442 399 aaKnown RBP21.82■■□□□ 1.08
CLN3-259ENST00000637551 NAPBQ9H115 298 aa21.82■■□□□ 1.08
CLN3-259ENST00000637551 A0A0D9SFI3 127 aa21.81■■□□□ 1.08
CLN3-259ENST00000637551 PCP11498 1178 aaKnown RBP21.81■■□□□ 1.08
CLN3-259ENST00000637551 GSPT1P15170 499 aaKnown RBP21.81■■□□□ 1.08
CLN3-259ENST00000637551 MOGSQ13724 837 aa21.81■■□□□ 1.08
CLN3-259ENST00000637551 ANAPC4Q9UJX5 808 aa21.81■■□□□ 1.08
CLN3-259ENST00000637551 APPP05067 770 aa21.8■■□□□ 1.08
CLN3-259ENST00000637551 CDK8P49336 464 aa21.8■■□□□ 1.08
CLN3-259ENST00000637551 BACE1P56817 501 aa21.8■■□□□ 1.08
CLN3-259ENST00000637551 NMIQ13287 307 aaPredicted RBP21.8■■□□□ 1.08
CLN3-259ENST00000637551 PABPC4Q13310 644 aaKnown RBP eCLIP21.8■■□□□ 1.08
CLN3-259ENST00000637551 RUFY2Q8WXA3 655 aa21.8■■□□□ 1.08
CLN3-259ENST00000637551 ZFYVE28Q9HCC9 887 aa21.8■■□□□ 1.08
CLN3-259ENST00000637551 HPS5Q9UPZ3 1129 aa21.8■■□□□ 1.08
CLN3-259ENST00000637551 LAMA4Q16363 1823 aa21.8■■□□□ 1.08
CLN3-259ENST00000637551 PLIN4Q96Q06 1357 aa21.79■■□□□ 1.08
CLN3-259ENST00000637551 BTBD19C9JJ37 291 aa21.79■■□□□ 1.08
CLN3-259ENST00000637551 GH2P01242 217 aa21.79■■□□□ 1.08
CLN3-259ENST00000637551 SLURP2P0DP57 97 aa21.79■■□□□ 1.08
CLN3-259ENST00000637551 USP14P54578 494 aa21.79■■□□□ 1.08
CLN3-259ENST00000637551 BMP2KLQ5H9B9 411 aa21.79■■□□□ 1.08
CLN3-259ENST00000637551 C12orf42Q96LP6 360 aa21.79■■□□□ 1.08
CLN3-259ENST00000637551 FAM227BQ96M60 508 aa21.79■■□□□ 1.08
CLN3-259ENST00000637551 PARK7Q99497 189 aaKnown RBP21.79■■□□□ 1.08
CLN3-259ENST00000637551 SYNPO2Q9UMS6 1093 aa21.79■■□□□ 1.08
CLN3-259ENST00000637551 AGTPBP1Q9UPW5 1226 aa21.79■■□□□ 1.08
CLN3-259ENST00000637551 USP17L10C9JJH3 530 aa21.78■■□□□ 1.08
CLN3-259ENST00000637551 FOXP2O15409 715 aa21.78■■□□□ 1.08
CLN3-259ENST00000637551 PDE4BQ07343 736 aa21.78■■□□□ 1.08
CLN3-259ENST00000637551 SPP2Q13103 211 aa21.78■■□□□ 1.08
CLN3-259ENST00000637551 PPP4R3BQ5MIZ7 849 aa21.78■■□□□ 1.08
CLN3-259ENST00000637551 FAM43AQ8N2R8 423 aa21.78■■□□□ 1.08
CLN3-259ENST00000637551 KIAA1683Q9H0B3 1180 aa21.78■■□□□ 1.08
CLN3-259ENST00000637551 SH2D4AQ9H788 454 aa21.78■■□□□ 1.08
CLN3-259ENST00000637551 PPP4R2Q9NY27 417 aa21.78■■□□□ 1.08
CLN3-259ENST00000637551 PNMA3Q9UL41 463 aa21.78■■□□□ 1.08
CLN3-259ENST00000637551 TRIM75PA6NK02 468 aa21.77■■□□□ 1.08
CLN3-259ENST00000637551 TLR2O60603 784 aa21.77■■□□□ 1.08
CLN3-259ENST00000637551 GDF11O95390 407 aa21.77■■□□□ 1.08
CLN3-259ENST00000637551 CYP2D6P10635 497 aa21.77■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 184 ms