RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 AP5Z1O43299 807 aa18.1■□□□□ 0.49
CLN3-251ENST00000636853 PLEKHA8P1O95397 391 aa18.1■□□□□ 0.49
CLN3-251ENST00000636853 TROAPQ12815 778 aa18.1■□□□□ 0.49
CLN3-251ENST00000636853 SLC39A14Q15043 492 aa18.1■□□□□ 0.49
CLN3-251ENST00000636853 HS1BP3Q53T59 392 aa18.1■□□□□ 0.49
CLN3-251ENST00000636853 C12orf60Q5U649 245 aa18.1■□□□□ 0.49
CLN3-251ENST00000636853 NLGN1Q8N2Q7 840 aa18.1■□□□□ 0.49
CLN3-251ENST00000636853 DYNLL2Q96FJ2 89 aa18.1■□□□□ 0.49
CLN3-251ENST00000636853 NOL10Q9BSC4 688 aaKnown RBP18.1■□□□□ 0.49
CLN3-251ENST00000636853 TSPY2A6NKD2 308 aa18.09■□□□□ 0.49
CLN3-251ENST00000636853 WDHD1O75717 1129 aaPredicted RBP18.09■□□□□ 0.49
CLN3-251ENST00000636853 PPP4CP60510 307 aa18.09■□□□□ 0.49
CLN3-251ENST00000636853 DIS3L2Q8IYB7 885 aaKnown RBP18.09■□□□□ 0.49
CLN3-251ENST00000636853 RTFDC1Q9BY42 306 aaPredicted RBP18.09■□□□□ 0.49
CLN3-251ENST00000636853 DNAJC25Q9H1X3 360 aa18.09■□□□□ 0.49
CLN3-251ENST00000636853 CBX8Q9HC52 389 aa18.09■□□□□ 0.49
CLN3-251ENST00000636853 RIMBP2O15034 1052 aa18.09■□□□□ 0.49
CLN3-251ENST00000636853 CTAGE5O15320 804 aa18.09■□□□□ 0.49
CLN3-251ENST00000636853 LDHCP07864 332 aa18.09■□□□□ 0.49
CLN3-251ENST00000636853 SAFBQ15424 915 aaKnown RBP eCLIP18.09■□□□□ 0.49
CLN3-251ENST00000636853 MFSD14BQ5SR56 506 aa18.09■□□□□ 0.49
CLN3-251ENST00000636853 AXDND1Q5T1B0 1012 aaPredicted RBP18.09■□□□□ 0.49
CLN3-251ENST00000636853 OLFM4Q6UX06 510 aa18.09■□□□□ 0.49
CLN3-251ENST00000636853 MPNDQ8N594 471 aa18.09■□□□□ 0.49
CLN3-251ENST00000636853 ERCC4Q92889 916 aaPredicted RBP18.09■□□□□ 0.49
CLN3-251ENST00000636853 MAP3K14Q99558 947 aa18.09■□□□□ 0.49
CLN3-251ENST00000636853 PTMAP06454 111 aaKnown RBP18.08■□□□□ 0.48
CLN3-251ENST00000636853 BTDP43251 543 aa18.08■□□□□ 0.48
CLN3-251ENST00000636853 AKAP17AQ02040 695 aaKnown RBP18.08■□□□□ 0.48
CLN3-251ENST00000636853 FUT2Q10981 343 aa18.08■□□□□ 0.48
CLN3-251ENST00000636853 PPP2R5BQ15173 497 aa18.08■□□□□ 0.48
CLN3-251ENST00000636853 PTPAQ15257 358 aa18.08■□□□□ 0.48
CLN3-251ENST00000636853 NOSTRINQ8IVI9 506 aa18.08■□□□□ 0.48
CLN3-251ENST00000636853 MAPKAPK5Q8IW41 473 aa18.08■□□□□ 0.48
CLN3-251ENST00000636853 SP8Q8IXZ3 490 aa18.08■□□□□ 0.48
CLN3-251ENST00000636853 RNF26Q9BY78 433 aaPredicted RBP18.08■□□□□ 0.48
CLN3-251ENST00000636853 SAP30BPQ9UHR5 308 aaKnown RBP18.08■□□□□ 0.48
CLN3-251ENST00000636853 IGSF3O75054 1194 aa18.07■□□□□ 0.48
CLN3-251ENST00000636853 TERF1P54274 439 aa18.07■□□□□ 0.48
CLN3-251ENST00000636853 CCDC39Q9UFE4 941 aa18.07■□□□□ 0.48
CLN3-251ENST00000636853 A0A087WWV3 80 aa18.07■□□□□ 0.48
CLN3-251ENST00000636853 DDAH1O94760 285 aa18.07■□□□□ 0.48
CLN3-251ENST00000636853 SRGNP10124 158 aa18.07■□□□□ 0.48
CLN3-251ENST00000636853 NR5A1Q13285 461 aa18.07■□□□□ 0.48
CLN3-251ENST00000636853 SHISA4Q96DD7 197 aa18.07■□□□□ 0.48
CLN3-251ENST00000636853 ATP6V0A2Q9Y487 856 aa18.07■□□□□ 0.48
CLN3-251ENST00000636853 V9GY48 417 aaPredicted RBP18.07■□□□□ 0.48
CLN3-251ENST00000636853 LRRC37AA6NMS7 1700 aa18.06■□□□□ 0.48
CLN3-251ENST00000636853 LTBP1Q14766 1721 aa18.06■□□□□ 0.48
CLN3-251ENST00000636853 MMP10P09238 476 aa18.06■□□□□ 0.48
CLN3-251ENST00000636853 CALM1P0DP23 149 aa18.06■□□□□ 0.48
CLN3-251ENST00000636853 CALM2P0DP24 149 aa18.06■□□□□ 0.48
CLN3-251ENST00000636853 CALM3P0DP25 149 aa18.06■□□□□ 0.48
CLN3-251ENST00000636853 MSNP26038 577 aaKnown RBP18.06■□□□□ 0.48
CLN3-251ENST00000636853 HMGB2P26583 209 aaKnown RBP18.06■□□□□ 0.48
CLN3-251ENST00000636853 PLCD1P51178 756 aa18.06■□□□□ 0.48
CLN3-251ENST00000636853 TFAP4Q01664 338 aa18.06■□□□□ 0.48
CLN3-251ENST00000636853 PKN1Q16512 942 aa18.06■□□□□ 0.48
CLN3-251ENST00000636853 MSL1Q68DK7 614 aa18.06■□□□□ 0.48
CLN3-251ENST00000636853 OXER1Q8TDS5 423 aa18.06■□□□□ 0.48
CLN3-251ENST00000636853 RBM28Q9NW13 759 aaKnown RBP18.06■□□□□ 0.48
CLN3-251ENST00000636853 EIF2AK3Q9NZJ5 1116 aaKnown RBP18.06■□□□□ 0.48
CLN3-251ENST00000636853 VPS54Q9P1Q0 977 aa18.06■□□□□ 0.48
CLN3-251ENST00000636853 NOL7Q9UMY1 257 aaKnown RBP18.06■□□□□ 0.48
CLN3-251ENST00000636853 NAV1Q8NEY1 1877 aa18.06■□□□□ 0.48
CLN3-251ENST00000636853 ZNF165P49910 485 aa18.06■□□□□ 0.48
CLN3-251ENST00000636853 TOB1P50616 345 aaPredicted RBP18.06■□□□□ 0.48
CLN3-251ENST00000636853 RCSD1Q6JBY9 416 aa18.06■□□□□ 0.48
CLN3-251ENST00000636853 SLC44A5Q8NCS7 719 aa18.06■□□□□ 0.48
CLN3-251ENST00000636853 SDF4Q9BRK5 362 aa18.06■□□□□ 0.48
CLN3-251ENST00000636853 PPP6R2O75170 966 aa18.05■□□□□ 0.48
CLN3-251ENST00000636853 PFKFB1P16118 471 aa18.05■□□□□ 0.48
CLN3-251ENST00000636853 CMA1P23946 247 aa18.05■□□□□ 0.48
CLN3-251ENST00000636853 GTF2IP78347 998 aa18.05■□□□□ 0.48
CLN3-251ENST00000636853 TMTC3Q6ZXV5 915 aa18.05■□□□□ 0.48
CLN3-251ENST00000636853 TMC4Q7Z404 712 aa18.05■□□□□ 0.48
CLN3-251ENST00000636853 FOXP1Q9H334 677 aaPredicted RBP18.05■□□□□ 0.48
CLN3-251ENST00000636853 MKNK2Q9HBH9 465 aa18.05■□□□□ 0.48
CLN3-251ENST00000636853 BAZ2BQ9UIF8 2168 aaKnown RBP18.05■□□□□ 0.48
CLN3-251ENST00000636853 CDK5RAP2Q96SN8 1893 aa18.05■□□□□ 0.48
CLN3-251ENST00000636853 GPR75-ASB3A0A0A6YYF3 556 aa18.05■□□□□ 0.48
CLN3-251ENST00000636853 PRPF3O43395 683 aaKnown RBP18.05■□□□□ 0.48
CLN3-251ENST00000636853 AMOTL1Q8IY63 956 aa18.05■□□□□ 0.48
CLN3-251ENST00000636853 CLIC6Q96NY7 704 aa18.05■□□□□ 0.48
CLN3-251ENST00000636853 IL17RBQ9NRM6 502 aa18.05■□□□□ 0.48
CLN3-251ENST00000636853 ZNF202O95125 648 aa18.04■□□□□ 0.48
CLN3-251ENST00000636853 NPR1P16066 1061 aa18.04■□□□□ 0.48
CLN3-251ENST00000636853 C11orf57Q6ZUT1 292 aaPredicted RBP18.04■□□□□ 0.48
CLN3-251ENST00000636853 TEX11Q8IYF3 940 aa18.04■□□□□ 0.48
CLN3-251ENST00000636853 SRBD1Q8N5C6 995 aaKnown RBP18.04■□□□□ 0.48
CLN3-251ENST00000636853 CTCFLQ8NI51 663 aaPredicted RBP18.04■□□□□ 0.48
CLN3-251ENST00000636853 FBXW7Q969H0 707 aa18.04■□□□□ 0.48
CLN3-251ENST00000636853 PARP3Q9Y6F1 533 aa18.04■□□□□ 0.48
CLN3-251ENST00000636853 NRXN2Q9P2S2 1712 aa18.04■□□□□ 0.48
CLN3-251ENST00000636853 SHC4Q6S5L8 630 aa18.03■□□□□ 0.48
CLN3-251ENST00000636853 JMYQ8N9B5 988 aa18.03■□□□□ 0.48
CLN3-251ENST00000636853 USP17L3A6NCW0 530 aa18.03■□□□□ 0.48
CLN3-251ENST00000636853 USP17L4A6NCW7 530 aa18.03■□□□□ 0.48
CLN3-251ENST00000636853 STX1AQ16623 288 aa18.03■□□□□ 0.48
CLN3-251ENST00000636853 USP17L1Q7RTZ2 530 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms