RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 PLCD4Q9BRC7 762 aa12.44□□□□□ -0.42
CLN3-244ENST00000636147 PUS7LQ9H0K6 701 aaKnown RBP12.44□□□□□ -0.42
CLN3-244ENST00000636147 CAPN7Q9Y6W3 813 aa12.44□□□□□ -0.42
CLN3-244ENST00000636147 V9GY48 417 aaPredicted RBP12.44□□□□□ -0.42
CLN3-244ENST00000636147 MAP2P11137 1827 aaKnown RBP12.44□□□□□ -0.42
CLN3-244ENST00000636147 PDE4BQ07343 736 aa12.43□□□□□ -0.42
CLN3-244ENST00000636147 TBC1D8BQ0IIM8 1120 aa12.43□□□□□ -0.42
CLN3-244ENST00000636147 GBP6Q6ZN66 633 aa12.43□□□□□ -0.42
CLN3-244ENST00000636147 TTLL7Q6ZT98 887 aa12.43□□□□□ -0.42
CLN3-244ENST00000636147 MICALCLQ6ZW33 695 aa12.43□□□□□ -0.42
CLN3-244ENST00000636147 TAF4BQ92750 862 aa12.43□□□□□ -0.42
CLN3-244ENST00000636147 ALS2CR12Q96Q35 445 aa12.43□□□□□ -0.42
CLN3-244ENST00000636147 FUT8Q9BYC5 575 aa12.43□□□□□ -0.42
CLN3-244ENST00000636147 ARMT1Q9H993 441 aa12.43□□□□□ -0.42
CLN3-244ENST00000636147 EPN1Q9Y6I3 576 aaPredicted RBP12.43□□□□□ -0.42
CLN3-244ENST00000636147 H3BQF6 201 aa12.43□□□□□ -0.42
CLN3-244ENST00000636147 PRR29P0C7W0 189 aa12.43□□□□□ -0.42
CLN3-244ENST00000636147 CDC25AP30304 524 aa12.43□□□□□ -0.42
CLN3-244ENST00000636147 PROSER2Q86WR7 435 aaPredicted RBP12.43□□□□□ -0.42
CLN3-244ENST00000636147 CABLES1Q8TDN4 633 aa12.43□□□□□ -0.42
CLN3-244ENST00000636147 KCNB2Q92953 911 aa12.43□□□□□ -0.42
CLN3-244ENST00000636147 CSRNP2Q9H175 543 aa12.43□□□□□ -0.42
CLN3-244ENST00000636147 MED4Q9NPJ6 270 aa12.43□□□□□ -0.42
CLN3-244ENST00000636147 CCDC194A0A1B0GVG4 234 aa12.43□□□□□ -0.42
CLN3-244ENST00000636147 MAGEA9P43362 315 aa12.43□□□□□ -0.42
CLN3-244ENST00000636147 SPATA1Q5VX52 437 aa12.43□□□□□ -0.42
CLN3-244ENST00000636147 BPIFA3Q9BQP9 254 aa12.43□□□□□ -0.42
CLN3-244ENST00000636147 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.43□□□□□ -0.42
CLN3-244ENST00000636147 CCDC113Q9H0I3 377 aa12.43□□□□□ -0.42
CLN3-244ENST00000636147 MROH2AA6NES4 1674 aa12.43□□□□□ -0.42
CLN3-244ENST00000636147 PLCD1P51178 756 aa12.42□□□□□ -0.42
CLN3-244ENST00000636147 TTF1Q15361 905 aaPredicted RBP12.42□□□□□ -0.42
CLN3-244ENST00000636147 CFAP58Q5T655 872 aa12.42□□□□□ -0.42
CLN3-244ENST00000636147 METTL16Q86W50 562 aaKnown RBP12.42□□□□□ -0.42
CLN3-244ENST00000636147 SCLT1Q96NL6 688 aa12.42□□□□□ -0.42
CLN3-244ENST00000636147 NAA15Q9BXJ9 866 aaKnown RBP12.42□□□□□ -0.42
CLN3-244ENST00000636147 ALDH8A1Q9H2A2 487 aaPredicted RBP12.42□□□□□ -0.42
CLN3-244ENST00000636147 POLD4Q9HCU8 107 aa12.42□□□□□ -0.42
CLN3-244ENST00000636147 ADGRG1Q9Y653 693 aa12.42□□□□□ -0.42
CLN3-244ENST00000636147 PSMA7O14818 248 aa12.42□□□□□ -0.42
CLN3-244ENST00000636147 MAP2K2P36507 400 aa12.42□□□□□ -0.42
CLN3-244ENST00000636147 FMR1Q06787 632 aaKnown RBP eCLIP12.42□□□□□ -0.42
CLN3-244ENST00000636147 ANKRD13CQ8N6S4 541 aa12.42□□□□□ -0.42
CLN3-244ENST00000636147 ENOX1Q8TC92 643 aaKnown RBP12.42□□□□□ -0.42
CLN3-244ENST00000636147 PCDHB6Q9Y5E3 794 aa12.42□□□□□ -0.42
CLN3-244ENST00000636147 MED23Q9ULK4 1368 aa12.42□□□□□ -0.42
CLN3-244ENST00000636147 ZNF609O15014 1411 aa12.42□□□□□ -0.42
CLN3-244ENST00000636147 PPP6R2O75170 966 aa12.42□□□□□ -0.42
CLN3-244ENST00000636147 PAK1Q13153 545 aa12.42□□□□□ -0.42
CLN3-244ENST00000636147 TUBB2AQ13885 445 aa12.42□□□□□ -0.42
CLN3-244ENST00000636147 USPL1Q5W0Q7 1092 aa12.42□□□□□ -0.42
CLN3-244ENST00000636147 PLBD2Q8NHP8 589 aa12.42□□□□□ -0.42
CLN3-244ENST00000636147 EPSTI1Q96J88 318 aa12.42□□□□□ -0.42
CLN3-244ENST00000636147 TMEM87BQ96K49 555 aa12.42□□□□□ -0.42
CLN3-244ENST00000636147 CCDC114Q96M63 670 aa12.42□□□□□ -0.42
CLN3-244ENST00000636147 TUBB2BQ9BVA1 445 aa12.42□□□□□ -0.42
CLN3-244ENST00000636147 KRT23Q9C075 422 aa12.42□□□□□ -0.42
CLN3-244ENST00000636147 RNF41Q9H4P4 317 aaPredicted RBP12.42□□□□□ -0.42
CLN3-244ENST00000636147 HDAC6Q9UBN7 1215 aa12.42□□□□□ -0.42
CLN3-244ENST00000636147 ZNF532Q9HCE3 1301 aa12.42□□□□□ -0.42
CLN3-244ENST00000636147 VAV2P52735 878 aa12.41□□□□□ -0.42
CLN3-244ENST00000636147 EXOSC10Q01780 885 aaKnown RBP12.41□□□□□ -0.42
CLN3-244ENST00000636147 NCAPHQ15003 741 aa12.41□□□□□ -0.42
CLN3-244ENST00000636147 TRIM65Q6PJ69 517 aa12.41□□□□□ -0.42
CLN3-244ENST00000636147 NELFBQ8WX92 580 aa12.41□□□□□ -0.42
CLN3-244ENST00000636147 MYCBPQ99417 103 aaPredicted RBP12.41□□□□□ -0.42
CLN3-244ENST00000636147 LUC7LQ9NQ29 371 aaKnown RBP12.41□□□□□ -0.42
CLN3-244ENST00000636147 MROH7-TTC4A0A0A0MT08 1334 aa12.41□□□□□ -0.42
CLN3-244ENST00000636147 ZMYM6O95789 1325 aa12.41□□□□□ -0.42
CLN3-244ENST00000636147 ZC3H13Q5T200 1668 aaKnown RBP12.41□□□□□ -0.42
CLN3-244ENST00000636147 TC2NQ8N9U0 490 aa12.41□□□□□ -0.42
CLN3-244ENST00000636147 OR8K1Q8NGG5 319 aa12.41□□□□□ -0.42
CLN3-244ENST00000636147 LOC102724159A0A0B4J2E5 919 aa12.41□□□□□ -0.42
CLN3-244ENST00000636147 TMCO5BA8MYB1 307 aa12.41□□□□□ -0.42
CLN3-244ENST00000636147 KRT2P35908 639 aa12.41□□□□□ -0.42
CLN3-244ENST00000636147 NOP2P46087 812 aaKnown RBP12.41□□□□□ -0.42
CLN3-244ENST00000636147 IFFO1Q0D2I5 559 aa12.41□□□□□ -0.42
CLN3-244ENST00000636147 PWP2Q15269 919 aaKnown RBP12.41□□□□□ -0.42
CLN3-244ENST00000636147 IFIT1BQ5T764 474 aaKnown RBP12.41□□□□□ -0.42
CLN3-244ENST00000636147 KAZALD1Q96I82 304 aa12.41□□□□□ -0.42
CLN3-244ENST00000636147 CAPS2Q9BXY5 557 aa12.41□□□□□ -0.42
CLN3-244ENST00000636147 ALKQ9UM73 1620 aa12.4□□□□□ -0.42
CLN3-244ENST00000636147 SH3TC1Q8TE82 1336 aa12.4□□□□□ -0.42
CLN3-244ENST00000636147 DEXIO95424 95 aa12.4□□□□□ -0.42
CLN3-244ENST00000636147 NF2P35240 595 aa12.4□□□□□ -0.42
CLN3-244ENST00000636147 FOXR1Q6PIV2 292 aa12.4□□□□□ -0.42
CLN3-244ENST00000636147 KRT28Q7Z3Y7 464 aa12.4□□□□□ -0.42
CLN3-244ENST00000636147 SLC52A2Q9HAB3 445 aa12.4□□□□□ -0.42
CLN3-244ENST00000636147 ZRANB2O95218 330 aaKnown RBP eCLIP12.4□□□□□ -0.42
CLN3-244ENST00000636147 RAD9BQ6WBX8 426 aa12.4□□□□□ -0.42
CLN3-244ENST00000636147 PIK3AP1Q6ZUJ8 805 aa12.4□□□□□ -0.42
CLN3-244ENST00000636147 PNKPQ96T60 521 aa12.4□□□□□ -0.42
CLN3-244ENST00000636147 RMND1Q9NWS8 449 aa12.4□□□□□ -0.42
CLN3-244ENST00000636147 MLH3Q9UHC1 1453 aa12.4□□□□□ -0.42
CLN3-244ENST00000636147 KCNJ18B7U540 433 aa12.4□□□□□ -0.42
CLN3-244ENST00000636147 PPFIA4O75335 1185 aa12.4□□□□□ -0.42
CLN3-244ENST00000636147 ASIC1P78348 528 aa12.4□□□□□ -0.42
CLN3-244ENST00000636147 CYP27A1Q02318 531 aa12.4□□□□□ -0.42
CLN3-244ENST00000636147 KCNJ12Q14500 433 aa12.4□□□□□ -0.42
CLN3-244ENST00000636147 NOA1Q8NC60 698 aaKnown RBP12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms