RNA–Protein interactions for RNA: ENST00000636058.1

CACNA1A-223, Transcript of calcium voltage-gated channel subunit alpha1 A, human

TSL 5

Gene CACNA1A, Length 656 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CACNA1A-223	ENST00000636058	SLC4A3	P48751	1232 aa		11.28	□□□□□ -0.6
CACNA1A-223	ENST00000636058	TFAP4	Q01664	338 aa		11.28	□□□□□ -0.6
CACNA1A-223	ENST00000636058	SART3	Q15020	963 aa	Known RBP	11.28	□□□□□ -0.6
CACNA1A-223	ENST00000636058	SEC23A	Q15436	765 aa		11.28	□□□□□ -0.6
CACNA1A-223	ENST00000636058	TMEM67	Q5HYA8	995 aa		11.28	□□□□□ -0.6
CACNA1A-223	ENST00000636058	FAM47A	Q5JRC9	791 aa		11.28	□□□□□ -0.6
CACNA1A-223	ENST00000636058	TATDN1	Q6P1N9	297 aa		11.28	□□□□□ -0.6
CACNA1A-223	ENST00000636058	USP50	Q70EL3	339 aa	Predicted RBP	11.28	□□□□□ -0.6
CACNA1A-223	ENST00000636058	IQCA1	Q86XH1	822 aa		11.28	□□□□□ -0.6
CACNA1A-223	ENST00000636058	CDAN1	Q8IWY9	1227 aa		11.28	□□□□□ -0.6
CACNA1A-223	ENST00000636058	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	11.28	□□□□□ -0.6
CACNA1A-223	ENST00000636058	ZSCAN31	Q96LW9	406 aa	Predicted RBP	11.28	□□□□□ -0.6
CACNA1A-223	ENST00000636058	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	11.28	□□□□□ -0.6
CACNA1A-223	ENST00000636058	ZKSCAN3	Q9BRR0	538 aa		11.28	□□□□□ -0.6
CACNA1A-223	ENST00000636058	LARP6	Q9BRS8	491 aa	Known RBP	11.28	□□□□□ -0.6
CACNA1A-223	ENST00000636058	UBAC1	Q9BSL1	405 aa		11.28	□□□□□ -0.6
CACNA1A-223	ENST00000636058	DEFB129	Q9H1M3	183 aa		11.28	□□□□□ -0.6
CACNA1A-223	ENST00000636058	LY9	Q9HBG7	655 aa		11.28	□□□□□ -0.6
CACNA1A-223	ENST00000636058	TCP11L1	Q9NUJ3	509 aa		11.28	□□□□□ -0.6
CACNA1A-223	ENST00000636058	GGA3	Q9NZ52	723 aa		11.28	□□□□□ -0.6
CACNA1A-223	ENST00000636058	HERC5	Q9UII4	1024 aa	Known RBP	11.28	□□□□□ -0.6
CACNA1A-223	ENST00000636058	TNKS	O95271	1327 aa		11.28	□□□□□ -0.6
CACNA1A-223	ENST00000636058	ERICH2	A1L162	156 aa		11.27	□□□□□ -0.61
CACNA1A-223	ENST00000636058	IFIT3	O14879	490 aa	Known RBP	11.27	□□□□□ -0.61
CACNA1A-223	ENST00000636058	TBC1D12	O60347	775 aa		11.27	□□□□□ -0.61
CACNA1A-223	ENST00000636058	LARGE1	O95461	756 aa		11.27	□□□□□ -0.61
CACNA1A-223	ENST00000636058	TSPY3	P0CV98	308 aa		11.27	□□□□□ -0.61
CACNA1A-223	ENST00000636058	TSPY8	P0CW00	308 aa		11.27	□□□□□ -0.61
CACNA1A-223	ENST00000636058	SLURP2	P0DP57	97 aa		11.27	□□□□□ -0.61
CACNA1A-223	ENST00000636058	MAP3K10	Q02779	954 aa		11.27	□□□□□ -0.61
CACNA1A-223	ENST00000636058	APOBR	Q0VD83	1088 aa		11.27	□□□□□ -0.61
CACNA1A-223	ENST00000636058	CUL4A	Q13619	759 aa		11.27	□□□□□ -0.61
CACNA1A-223	ENST00000636058	ME3	Q16798	604 aa		11.27	□□□□□ -0.61
CACNA1A-223	ENST00000636058	SGMS1	Q86VZ5	419 aa		11.27	□□□□□ -0.61
CACNA1A-223	ENST00000636058	ENAH	Q8N8S7	591 aa	Predicted RBP	11.27	□□□□□ -0.61
CACNA1A-223	ENST00000636058	NEDD1	Q8NHV4	660 aa		11.27	□□□□□ -0.61
CACNA1A-223	ENST00000636058	TRIM34	Q9BYJ4	488 aa		11.27	□□□□□ -0.61
CACNA1A-223	ENST00000636058	TAF1D	Q9H5J8	278 aa	Predicted RBP	11.27	□□□□□ -0.61
CACNA1A-223	ENST00000636058	SENP2	Q9HC62	589 aa		11.27	□□□□□ -0.61
CACNA1A-223	ENST00000636058	SH2B1	Q9NRF2	756 aa	Predicted RBP	11.27	□□□□□ -0.61
CACNA1A-223	ENST00000636058	IL17RB	Q9NRM6	502 aa		11.27	□□□□□ -0.61
CACNA1A-223	ENST00000636058	BRPF3	Q9ULD4	1205 aa		11.27	□□□□□ -0.61
CACNA1A-223	ENST00000636058	SCAF8	Q9UPN6	1271 aa	Known RBP	11.27	□□□□□ -0.61
CACNA1A-223	ENST00000636058	PPP2R3B	Q9Y5P8	575 aa		11.27	□□□□□ -0.61
CACNA1A-223	ENST00000636058	FAM196B	A6NMK8	535 aa		11.26	□□□□□ -0.61
CACNA1A-223	ENST00000636058	NMT2	O60551	498 aa		11.26	□□□□□ -0.61
CACNA1A-223	ENST00000636058	AKR1B1	P15121	316 aa		11.26	□□□□□ -0.61
CACNA1A-223	ENST00000636058	NOV	P48745	357 aa		11.26	□□□□□ -0.61
CACNA1A-223	ENST00000636058	WTAP	Q15007	396 aa		11.26	□□□□□ -0.61
CACNA1A-223	ENST00000636058	DGKH	Q86XP1	1220 aa		11.26	□□□□□ -0.61
CACNA1A-223	ENST00000636058	TMTC2	Q8N394	836 aa		11.26	□□□□□ -0.61
CACNA1A-223	ENST00000636058	ZC3H15	Q8WU90	426 aa	Known RBP	11.26	□□□□□ -0.61
CACNA1A-223	ENST00000636058	ZNF274	Q96GC6	653 aa	Predicted RBP	11.26	□□□□□ -0.61
CACNA1A-223	ENST00000636058	CCDC17	Q96LX7	622 aa		11.26	□□□□□ -0.61
CACNA1A-223	ENST00000636058	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	11.26	□□□□□ -0.61
CACNA1A-223	ENST00000636058	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	11.26	□□□□□ -0.61
CACNA1A-223	ENST00000636058	DAXX	Q9UER7	740 aa	Predicted RBP	11.26	□□□□□ -0.61
CACNA1A-223	ENST00000636058	IGKV6D-41	A0A0C4DH26	115 aa		11.25	□□□□□ -0.61
CACNA1A-223	ENST00000636058	KLF18	A0A0U1RQI7	1052 aa		11.25	□□□□□ -0.61
CACNA1A-223	ENST00000636058	PFKFB2	O60825	505 aa		11.25	□□□□□ -0.61
CACNA1A-223	ENST00000636058	PDIA3	P30101	505 aa	Known RBP	11.25	□□□□□ -0.61
CACNA1A-223	ENST00000636058	ST3GAL1	Q11201	340 aa		11.25	□□□□□ -0.61
CACNA1A-223	ENST00000636058	CERKL	Q49MI3	558 aa	Predicted RBP	11.25	□□□□□ -0.61
CACNA1A-223	ENST00000636058	CCDC178	Q5BJE1	867 aa		11.25	□□□□□ -0.61
CACNA1A-223	ENST00000636058	RCSD1	Q6JBY9	416 aa		11.25	□□□□□ -0.61
CACNA1A-223	ENST00000636058	APOA5	Q6Q788	366 aa		11.25	□□□□□ -0.61
CACNA1A-223	ENST00000636058	PNMA8A	Q86V59	439 aa	Predicted RBP	11.25	□□□□□ -0.61
CACNA1A-223	ENST00000636058	ANKS1A	Q92625	1134 aa		11.25	□□□□□ -0.61
CACNA1A-223	ENST00000636058	NID2	Q14112	1375 aa		11.25	□□□□□ -0.61
CACNA1A-223	ENST00000636058	CCDC69	A6NI79	296 aa		11.24	□□□□□ -0.61
CACNA1A-223	ENST00000636058	SCRN1	Q12765	414 aa		11.24	□□□□□ -0.61
CACNA1A-223	ENST00000636058	RRP1B	Q14684	758 aa	Known RBP	11.24	□□□□□ -0.61
CACNA1A-223	ENST00000636058	IFIT1B	Q5T764	474 aa	Known RBP	11.24	□□□□□ -0.61
CACNA1A-223	ENST00000636058	NBPF12	Q5TAG4	269 aa	Predicted RBP	11.24	□□□□□ -0.61
CACNA1A-223	ENST00000636058	NFXL1	Q6ZNB6	911 aa		11.24	□□□□□ -0.61
CACNA1A-223	ENST00000636058	NECAB1	Q8N987	351 aa		11.24	□□□□□ -0.61
CACNA1A-223	ENST00000636058	GTF3C6	Q969F1	213 aa		11.24	□□□□□ -0.61
CACNA1A-223	ENST00000636058	DCPS	Q96C86	337 aa	Known RBP	11.24	□□□□□ -0.61
CACNA1A-223	ENST00000636058	HOOK2	Q96ED9	719 aa		11.24	□□□□□ -0.61
CACNA1A-223	ENST00000636058	CEP95	Q96GE4	821 aa		11.24	□□□□□ -0.61
CACNA1A-223	ENST00000636058	INTS4	Q96HW7	963 aa	Known RBP	11.24	□□□□□ -0.61
CACNA1A-223	ENST00000636058	SLK	Q9H2G2	1235 aa	Predicted RBP	11.24	□□□□□ -0.61
CACNA1A-223	ENST00000636058	HPS5	Q9UPZ3	1129 aa		11.24	□□□□□ -0.61
CACNA1A-223	ENST00000636058	SLC12A7	Q9Y666	1083 aa		11.24	□□□□□ -0.61
CACNA1A-223	ENST00000636058	POLR2A	P24928	1970 aa	Known RBP	11.24	□□□□□ -0.61
CACNA1A-223	ENST00000636058	SSC5D	A1L4H1	1573 aa		11.24	□□□□□ -0.61
CACNA1A-223	ENST00000636058	GOLGA8B	A8MQT2	603 aa		11.23	□□□□□ -0.61
CACNA1A-223	ENST00000636058	PHF20L1	A8MW92	1017 aa		11.23	□□□□□ -0.61
CACNA1A-223	ENST00000636058	ZBTB43	O43298	467 aa		11.23	□□□□□ -0.61
CACNA1A-223	ENST00000636058	RCAN1	P53805	252 aa		11.23	□□□□□ -0.61
CACNA1A-223	ENST00000636058	STK3	Q13188	491 aa		11.23	□□□□□ -0.61
CACNA1A-223	ENST00000636058	ABCB5	Q2M3G0	1257 aa		11.23	□□□□□ -0.61
CACNA1A-223	ENST00000636058	TMEM179	Q6ZVK1	233 aa		11.23	□□□□□ -0.61
CACNA1A-223	ENST00000636058	MIGA2	Q7L4E1	593 aa		11.23	□□□□□ -0.61
CACNA1A-223	ENST00000636058	CCDC83	Q8IWF9	413 aa		11.23	□□□□□ -0.61
CACNA1A-223	ENST00000636058	SULF1	Q8IWU6	871 aa		11.23	□□□□□ -0.61
CACNA1A-223	ENST00000636058	ZNF654	Q8IZM8	581 aa		11.23	□□□□□ -0.61
CACNA1A-223	ENST00000636058	MTMR4	Q9NYA4	1195 aa		11.23	□□□□□ -0.61
CACNA1A-223	ENST00000636058	ADM5	C9JUS6	153 aa		11.22	□□□□□ -0.61
CACNA1A-223	ENST00000636058	MPHOSPH10	O00566	681 aa	Known RBP	11.22	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms