RNA–Protein interactions for RNA: ENST00000621990.4

PDPN-212, Transcript of podoplanin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PDPN, Length 2,738 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-212ENST00000621990 IFNKQ9P0W0 207 aa10.85□□□□□ -0.67
PDPN-212ENST00000621990 SRPRBQ9Y5M8 271 aaKnown RBP10.85□□□□□ -0.67
PDPN-212ENST00000621990 THSD7AQ9UPZ6 1657 aa10.84□□□□□ -0.67
PDPN-212ENST00000621990 TAF1LQ8IZX4 1826 aa10.84□□□□□ -0.67
PDPN-212ENST00000621990 SMIM22K7EJ46 135 aa10.84□□□□□ -0.67
PDPN-212ENST00000621990 PRPF3O43395 683 aaKnown RBP10.84□□□□□ -0.67
PDPN-212ENST00000621990 IGSF3O75054 1194 aa10.84□□□□□ -0.67
PDPN-212ENST00000621990 CALM1P0DP23 149 aa10.84□□□□□ -0.67
PDPN-212ENST00000621990 CALM2P0DP24 149 aa10.84□□□□□ -0.67
PDPN-212ENST00000621990 CALM3P0DP25 149 aa10.84□□□□□ -0.67
PDPN-212ENST00000621990 MYL5Q02045 173 aa10.84□□□□□ -0.67
PDPN-212ENST00000621990 TROAPQ12815 778 aa10.84□□□□□ -0.67
PDPN-212ENST00000621990 VPS72Q15906 364 aa10.84□□□□□ -0.67
PDPN-212ENST00000621990 RBM28Q9NW13 759 aaKnown RBP10.84□□□□□ -0.67
PDPN-212ENST00000621990 CEP131Q9UPN4 1083 aa10.84□□□□□ -0.67
PDPN-212ENST00000621990 RPS6KA4O75676 772 aa10.84□□□□□ -0.67
PDPN-212ENST00000621990 DDAH1O94760 285 aa10.84□□□□□ -0.67
PDPN-212ENST00000621990 TNNT1P13805 278 aa10.84□□□□□ -0.67
PDPN-212ENST00000621990 SARSP49591 514 aaKnown RBP10.84□□□□□ -0.67
PDPN-212ENST00000621990 RPS8P62241 208 aaKnown RBP10.84□□□□□ -0.67
PDPN-212ENST00000621990 DYNLL1P63167 89 aaKnown RBP10.84□□□□□ -0.67
PDPN-212ENST00000621990 NR5A1Q13285 461 aa10.84□□□□□ -0.67
PDPN-212ENST00000621990 SYCP1Q15431 976 aa10.84□□□□□ -0.67
PDPN-212ENST00000621990 CMTR1Q8N1G2 835 aaKnown RBP10.84□□□□□ -0.67
PDPN-212ENST00000621990 CNNM3Q8NE01 707 aa10.84□□□□□ -0.67
PDPN-212ENST00000621990 ANKRD2Q9GZV1 360 aa10.84□□□□□ -0.67
PDPN-212ENST00000621990 PCDHB6Q9Y5E3 794 aa10.84□□□□□ -0.67
PDPN-212ENST00000621990 SBF2Q86WG5 1849 aa10.84□□□□□ -0.67
PDPN-212ENST00000621990 LY75O60449 1722 aa10.83□□□□□ -0.67
PDPN-212ENST00000621990 NUTM2BA6NNL0 878 aaPredicted RBP10.83□□□□□ -0.68
PDPN-212ENST00000621990 NUTM2EB1AL46 878 aaPredicted RBP10.83□□□□□ -0.68
PDPN-212ENST00000621990 BMP6P22004 513 aa10.83□□□□□ -0.68
PDPN-212ENST00000621990 KLRK1P26718 216 aa10.83□□□□□ -0.68
PDPN-212ENST00000621990 TPD52L1Q16890 204 aaPredicted RBP10.83□□□□□ -0.68
PDPN-212ENST00000621990 ARMCX5Q6P1M9 558 aa10.83□□□□□ -0.68
PDPN-212ENST00000621990 NUTM2AQ8IVF1 878 aaPredicted RBP10.83□□□□□ -0.68
PDPN-212ENST00000621990 CCAR2Q8N163 923 aaKnown RBP10.83□□□□□ -0.68
PDPN-212ENST00000621990 SPATA20Q8TB22 786 aa10.83□□□□□ -0.68
PDPN-212ENST00000621990 OXER1Q8TDS5 423 aa10.83□□□□□ -0.68
PDPN-212ENST00000621990 NUP133Q8WUM0 1156 aa10.83□□□□□ -0.68
PDPN-212ENST00000621990 UBE2Q2Q8WVN8 375 aa10.83□□□□□ -0.68
PDPN-212ENST00000621990 ANKRD7Q92527 254 aa10.83□□□□□ -0.68
PDPN-212ENST00000621990 HOOK1Q9UJC3 728 aaKnown RBP10.83□□□□□ -0.68
PDPN-212ENST00000621990 PCDHA5Q9Y5H7 936 aa10.83□□□□□ -0.68
PDPN-212ENST00000621990 TNRC6CQ9HCJ0 1690 aaKnown RBP10.83□□□□□ -0.68
PDPN-212ENST00000621990 USP27XA6NNY8 438 aa10.83□□□□□ -0.68
PDPN-212ENST00000621990 SMC2O95347 1197 aa10.83□□□□□ -0.68
PDPN-212ENST00000621990 NT5C2P49902 561 aa10.83□□□□□ -0.68
PDPN-212ENST00000621990 FANCCQ00597 558 aa10.83□□□□□ -0.68
PDPN-212ENST00000621990 MECOMQ03112 1051 aa10.83□□□□□ -0.68
PDPN-212ENST00000621990 GRIN1Q05586 938 aa10.83□□□□□ -0.68
PDPN-212ENST00000621990 FAM98CQ17RN3 349 aaKnown RBP10.83□□□□□ -0.68
PDPN-212ENST00000621990 SBK1Q52WX2 424 aa10.83□□□□□ -0.68
PDPN-212ENST00000621990 IFIT1BQ5T764 474 aaKnown RBP10.83□□□□□ -0.68
PDPN-212ENST00000621990 CATIPQ7Z7H3 387 aa10.83□□□□□ -0.68
PDPN-212ENST00000621990 IQCA1Q86XH1 822 aa10.83□□□□□ -0.68
PDPN-212ENST00000621990 TNFRSF25Q93038 417 aa10.83□□□□□ -0.68
PDPN-212ENST00000621990 XBP1P17861 261 aa10.82□□□□□ -0.68
PDPN-212ENST00000621990 TM4SF1P30408 202 aa10.82□□□□□ -0.68
PDPN-212ENST00000621990 TSC1Q92574 1164 aa10.82□□□□□ -0.68
PDPN-212ENST00000621990 NLRP3Q96P20 1036 aa10.82□□□□□ -0.68
PDPN-212ENST00000621990 SETDB2Q96T68 719 aa10.82□□□□□ -0.68
PDPN-212ENST00000621990 ATP8A2Q9NTI2 1148 aa10.82□□□□□ -0.68
PDPN-212ENST00000621990 CYP2D7A0A087X1C5 515 aa10.82□□□□□ -0.68
PDPN-212ENST00000621990 ACTN4O43707 911 aaKnown RBP10.82□□□□□ -0.68
PDPN-212ENST00000621990 ATP1A3P13637 1013 aa10.82□□□□□ -0.68
PDPN-212ENST00000621990 HIBADHP31937 336 aaKnown RBP10.82□□□□□ -0.68
PDPN-212ENST00000621990 POSTNQ15063 836 aa10.82□□□□□ -0.68
PDPN-212ENST00000621990 NPY5RQ15761 445 aa10.82□□□□□ -0.68
PDPN-212ENST00000621990 CEP135Q66GS9 1140 aa10.82□□□□□ -0.68
PDPN-212ENST00000621990 TMTC3Q6ZXV5 915 aa10.82□□□□□ -0.68
PDPN-212ENST00000621990 CCDC82Q8N4S0 544 aa10.82□□□□□ -0.68
PDPN-212ENST00000621990 TRIML1Q8N9V2 468 aa10.82□□□□□ -0.68
PDPN-212ENST00000621990 DCP1AQ9NPI6 582 aaPredicted RBP10.82□□□□□ -0.68
PDPN-212ENST00000621990 AATFQ9NY61 560 aaKnown RBP eCLIP10.82□□□□□ -0.68
PDPN-212ENST00000621990 USP17L12C9JPN9 530 aa10.81□□□□□ -0.68
PDPN-212ENST00000621990 USP17L21D6R901 530 aa10.81□□□□□ -0.68
PDPN-212ENST00000621990 LMOD1P29536 600 aaPredicted RBP10.81□□□□□ -0.68
PDPN-212ENST00000621990 KANK3Q6NY19 840 aa10.81□□□□□ -0.68
PDPN-212ENST00000621990 OLFM4Q6UX06 510 aa10.81□□□□□ -0.68
PDPN-212ENST00000621990 TMC6Q7Z403 805 aa10.81□□□□□ -0.68
PDPN-212ENST00000621990 CABP5Q9NP86 173 aa10.81□□□□□ -0.68
PDPN-212ENST00000621990 MAN1B1Q9UKM7 699 aa10.81□□□□□ -0.68
PDPN-212ENST00000621990 CNTNAP5Q8WYK1 1306 aa10.81□□□□□ -0.68
PDPN-212ENST00000621990 PSDA5PKW4 1024 aaPredicted RBP10.81□□□□□ -0.68
PDPN-212ENST00000621990 FOXN1O15353 648 aa10.81□□□□□ -0.68
PDPN-212ENST00000621990 POLR2DO15514 142 aaKnown RBP10.81□□□□□ -0.68
PDPN-212ENST00000621990 CBFA2T2O43439 604 aa10.81□□□□□ -0.68
PDPN-212ENST00000621990 PLEKHA8P1O95397 391 aa10.81□□□□□ -0.68
PDPN-212ENST00000621990 BMP15O95972 392 aa10.81□□□□□ -0.68
PDPN-212ENST00000621990 KRT2P35908 639 aa10.81□□□□□ -0.68
PDPN-212ENST00000621990 MORC3Q14149 939 aa10.81□□□□□ -0.68
PDPN-212ENST00000621990 E4F1Q66K89 784 aaPredicted RBP10.81□□□□□ -0.68
PDPN-212ENST00000621990 ISM2Q6H9L7 571 aa10.81□□□□□ -0.68
PDPN-212ENST00000621990 NBPF5PQ86XG9 351 aaPredicted RBP10.81□□□□□ -0.68
PDPN-212ENST00000621990 CRNKL1Q9BZJ0 848 aaKnown RBP10.81□□□□□ -0.68
PDPN-212ENST00000621990 ARPP21Q9UBL0 812 aaPredicted RBP10.81□□□□□ -0.68
PDPN-212ENST00000621990 TRIM75PA6NK02 468 aa10.8□□□□□ -0.68
PDPN-212ENST00000621990 KIF2AO00139 706 aaPredicted RBP10.8□□□□□ -0.68
PDPN-212ENST00000621990 SFPQP23246 707 aaKnown RBP eCLIP10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms