RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 CEP95Q96GE4 821 aa12.22□□□□□ -0.45
VPS11-208ENST00000621676 FAM217BQ9NTX9 383 aaPredicted RBP12.22□□□□□ -0.45
VPS11-208ENST00000621676 TCHHQ07283 1943 aa12.22□□□□□ -0.45
VPS11-208ENST00000621676 SPEF2Q9C093 1822 aa12.22□□□□□ -0.45
VPS11-208ENST00000621676 YDJCA8MPS7 323 aa12.22□□□□□ -0.45
VPS11-208ENST00000621676 AKR1B1P15121 316 aa12.22□□□□□ -0.45
VPS11-208ENST00000621676 CRKP46108 304 aa12.22□□□□□ -0.45
VPS11-208ENST00000621676 TTBK2Q6IQ55 1244 aa12.22□□□□□ -0.45
VPS11-208ENST00000621676 DIS3L2Q8IYB7 885 aaKnown RBP12.22□□□□□ -0.45
VPS11-208ENST00000621676 PNMA1Q8ND90 353 aa12.22□□□□□ -0.45
VPS11-208ENST00000621676 KCNB2Q92953 911 aa12.22□□□□□ -0.45
VPS11-208ENST00000621676 PSMD14O00487 310 aa12.21□□□□□ -0.45
VPS11-208ENST00000621676 NBPF9Q3BBW0 867 aa12.21□□□□□ -0.45
VPS11-208ENST00000621676 EARS2Q5JPH6 523 aaKnown RBP12.21□□□□□ -0.45
VPS11-208ENST00000621676 CDC42EP5Q6NZY7 148 aa12.21□□□□□ -0.45
VPS11-208ENST00000621676 RTFDC1Q9BY42 306 aaPredicted RBP12.21□□□□□ -0.45
VPS11-208ENST00000621676 RNF41Q9H4P4 317 aaPredicted RBP12.21□□□□□ -0.45
VPS11-208ENST00000621676 IL17RBQ9NRM6 502 aa12.21□□□□□ -0.45
VPS11-208ENST00000621676 ATP6V1DQ9Y5K8 247 aa12.21□□□□□ -0.45
VPS11-208ENST00000621676 LDHCP07864 332 aa12.21□□□□□ -0.45
VPS11-208ENST00000621676 GNAT2P19087 354 aa12.21□□□□□ -0.45
VPS11-208ENST00000621676 NASPP49321 788 aaPredicted RBP12.21□□□□□ -0.45
VPS11-208ENST00000621676 KLHL40Q2TBA0 621 aa12.21□□□□□ -0.45
VPS11-208ENST00000621676 CCAR1Q8IX12 1150 aaKnown RBP12.21□□□□□ -0.45
VPS11-208ENST00000621676 TEKT1Q969V4 418 aa12.21□□□□□ -0.45
VPS11-208ENST00000621676 CRAMP1Q96RY5 1269 aa12.21□□□□□ -0.45
VPS11-208ENST00000621676 FLT1P17948 1338 aa12.21□□□□□ -0.46
VPS11-208ENST00000621676 NLRP5P59047 1200 aa12.21□□□□□ -0.46
VPS11-208ENST00000621676 TSGA10IPQ3SY00 556 aa12.21□□□□□ -0.46
VPS11-208ENST00000621676 FSIP1Q8NA03 581 aa12.21□□□□□ -0.46
VPS11-208ENST00000621676 TMEM39BQ9GZU3 492 aa12.21□□□□□ -0.46
VPS11-208ENST00000621676 LAMB4A4D0S4 1761 aa12.2□□□□□ -0.46
VPS11-208ENST00000621676 PTMAP06454 111 aaKnown RBP12.2□□□□□ -0.46
VPS11-208ENST00000621676 SLC3A2P08195 630 aaKnown RBP12.2□□□□□ -0.46
VPS11-208ENST00000621676 SLC30A10Q6XR72 485 aa12.2□□□□□ -0.46
VPS11-208ENST00000621676 GRAMD1CQ8IYS0 662 aa12.2□□□□□ -0.46
VPS11-208ENST00000621676 RASSF8Q8NHQ8 419 aa12.2□□□□□ -0.46
VPS11-208ENST00000621676 COA7Q96BR5 231 aa12.2□□□□□ -0.46
VPS11-208ENST00000621676 USP25Q9UHP3 1055 aa12.2□□□□□ -0.46
VPS11-208ENST00000621676 NUP188Q5SRE5 1749 aa12.2□□□□□ -0.46
VPS11-208ENST00000621676 WNT7AO00755 349 aa12.2□□□□□ -0.46
VPS11-208ENST00000621676 POLD1P28340 1107 aa12.2□□□□□ -0.46
VPS11-208ENST00000621676 CFAP100Q494V2 611 aa12.2□□□□□ -0.46
VPS11-208ENST00000621676 PIK3AP1Q6ZUJ8 805 aa12.2□□□□□ -0.46
VPS11-208ENST00000621676 OGFOD1Q8N543 542 aa12.2□□□□□ -0.46
VPS11-208ENST00000621676 SRBD1Q8N5C6 995 aaKnown RBP12.2□□□□□ -0.46
VPS11-208ENST00000621676 ZNF512BQ96KM6 892 aaPredicted RBP12.2□□□□□ -0.46
VPS11-208ENST00000621676 MROH7-TTC4A0A0A0MT08 1334 aa12.2□□□□□ -0.46
VPS11-208ENST00000621676 USP17L5A8MUK1 530 aa12.19□□□□□ -0.46
VPS11-208ENST00000621676 MCM7P33993 719 aa12.19□□□□□ -0.46
VPS11-208ENST00000621676 USH1GQ495M9 461 aa12.19□□□□□ -0.46
VPS11-208ENST00000621676 USP49Q70CQ1 688 aa12.19□□□□□ -0.46
VPS11-208ENST00000621676 FBXO18Q8NFZ0 1043 aa12.19□□□□□ -0.46
VPS11-208ENST00000621676 ZNF274Q96GC6 653 aaPredicted RBP12.19□□□□□ -0.46
VPS11-208ENST00000621676 ERCC3P19447 782 aa12.19□□□□□ -0.46
VPS11-208ENST00000621676 C12orf60Q5U649 245 aa12.19□□□□□ -0.46
VPS11-208ENST00000621676 ZNF526Q8TF50 670 aaPredicted RBP12.19□□□□□ -0.46
VPS11-208ENST00000621676 CNKSR1Q969H4 720 aa12.19□□□□□ -0.46
VPS11-208ENST00000621676 CNNM2Q9H8M5 875 aa12.19□□□□□ -0.46
VPS11-208ENST00000621676 POLD4Q9HCU8 107 aa12.19□□□□□ -0.46
VPS11-208ENST00000621676 BRWD3Q6RI45 1802 aa12.19□□□□□ -0.46
VPS11-208ENST00000621676 MKI67P46013 3256 aaKnown RBP12.19□□□□□ -0.46
VPS11-208ENST00000621676 JAKMIP3Q5VZ66 844 aa12.19□□□□□ -0.46
VPS11-208ENST00000621676 FLAD1Q8NFF5 587 aa12.19□□□□□ -0.46
VPS11-208ENST00000621676 JDP2Q8WYK2 163 aa12.19□□□□□ -0.46
VPS11-208ENST00000621676 TNMDQ9H2S6 317 aa12.19□□□□□ -0.46
VPS11-208ENST00000621676 C4BP0C0L5 1744 aa12.18□□□□□ -0.46
VPS11-208ENST00000621676 RESTQ13127 1097 aa12.18□□□□□ -0.46
VPS11-208ENST00000621676 LUZP1Q86V48 1076 aa12.18□□□□□ -0.46
VPS11-208ENST00000621676 STAG1Q8WVM7 1258 aa12.18□□□□□ -0.46
VPS11-208ENST00000621676 CSRNP1Q96S65 589 aa12.18□□□□□ -0.46
VPS11-208ENST00000621676 TMEM47Q9BQJ4 181 aa12.18□□□□□ -0.46
VPS11-208ENST00000621676 COA1Q9GZY4 146 aa12.18□□□□□ -0.46
VPS11-208ENST00000621676 PCDHB6Q9Y5E3 794 aa12.18□□□□□ -0.46
VPS11-208ENST00000621676 LAMA3Q16787 3333 aa12.18□□□□□ -0.46
VPS11-208ENST00000621676 HOXA10P31260 410 aaPredicted RBP12.18□□□□□ -0.46
VPS11-208ENST00000621676 RHBDL3P58872 404 aa12.18□□□□□ -0.46
VPS11-208ENST00000621676 HMGN5P82970 282 aaKnown RBP12.18□□□□□ -0.46
VPS11-208ENST00000621676 PLEKHG2Q9H7P9 1386 aa12.18□□□□□ -0.46
VPS11-208ENST00000621676 BAZ2AQ9UIF9 1905 aaKnown RBP12.18□□□□□ -0.46
VPS11-208ENST00000621676 WDHD1O75717 1129 aaPredicted RBP12.17□□□□□ -0.46
VPS11-208ENST00000621676 UBXN2AP68543 259 aa12.17□□□□□ -0.46
VPS11-208ENST00000621676 SEPT2Q15019 361 aa12.17□□□□□ -0.46
VPS11-208ENST00000621676 SAFBQ15424 915 aaKnown RBP eCLIP12.17□□□□□ -0.46
VPS11-208ENST00000621676 APOBEC3HQ6NTF7 200 aaKnown RBP12.17□□□□□ -0.46
VPS11-208ENST00000621676 TMEM87BQ96K49 555 aa12.17□□□□□ -0.46
VPS11-208ENST00000621676 GOLPH3LQ9H4A5 285 aa12.17□□□□□ -0.46
VPS11-208ENST00000621676 LAMA2P24043 3122 aaKnown RBP12.17□□□□□ -0.46
VPS11-208ENST00000621676 AFMP43652 599 aa12.17□□□□□ -0.46
VPS11-208ENST00000621676 GSTO1P78417 241 aa12.17□□□□□ -0.46
VPS11-208ENST00000621676 TRIM44Q96DX7 344 aaPredicted RBP12.17□□□□□ -0.46
VPS11-208ENST00000621676 DNAJC25Q9H1X3 360 aa12.17□□□□□ -0.46
VPS11-208ENST00000621676 PCDHA7Q9UN72 937 aa12.17□□□□□ -0.46
VPS11-208ENST00000621676 FOXN1O15353 648 aa12.17□□□□□ -0.46
VPS11-208ENST00000621676 RASA1P20936 1047 aa12.17□□□□□ -0.46
VPS11-208ENST00000621676 SKOR2Q2VWA4 1001 aaPredicted RBP12.17□□□□□ -0.46
VPS11-208ENST00000621676 ANP32BQ92688 251 aaKnown RBP12.17□□□□□ -0.46
VPS11-208ENST00000621676 ATP8A2Q9NTI2 1148 aa12.17□□□□□ -0.46
VPS11-208ENST00000621676 BIN2Q9UBW5 565 aaPredicted RBP12.17□□□□□ -0.46
VPS11-208ENST00000621676 KLRF2D3W0D1 207 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms