RNA–Protein interactions for RNA: ENST00000620429.4

VPS11-207, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5 BASIC

Gene VPS11, Length 2,739 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-207ENST00000620429 PDIA5Q14554 519 aa11.73□□□□□ -0.53
VPS11-207ENST00000620429 SNCBQ16143 134 aa11.73□□□□□ -0.53
VPS11-207ENST00000620429 TUBB8Q3ZCM7 444 aa11.73□□□□□ -0.53
VPS11-207ENST00000620429 CCDC40Q4G0X9 1142 aa11.73□□□□□ -0.53
VPS11-207ENST00000620429 BOLA2Q9H3K6 86 aa11.73□□□□□ -0.53
VPS11-207ENST00000620429 CFAP45Q9UL16 551 aa11.73□□□□□ -0.53
VPS11-207ENST00000620429 FAM163BP0C2L3 166 aa11.73□□□□□ -0.53
VPS11-207ENST00000620429 MYL6BP14649 208 aa11.73□□□□□ -0.53
VPS11-207ENST00000620429 ACTN3Q08043 901 aaPredicted RBP11.73□□□□□ -0.53
VPS11-207ENST00000620429 BRAPQ7Z569 592 aa11.73□□□□□ -0.53
VPS11-207ENST00000620429 ZBTB10Q96DT7 871 aa11.73□□□□□ -0.53
VPS11-207ENST00000620429 SPDL1Q96EA4 605 aa11.73□□□□□ -0.53
VPS11-207ENST00000620429 CAPS2Q9BXY5 557 aa11.73□□□□□ -0.53
VPS11-207ENST00000620429 CHCHD3Q9NX63 227 aaKnown RBP11.73□□□□□ -0.53
VPS11-207ENST00000620429 CAMTA1Q9Y6Y1 1673 aa11.72□□□□□ -0.53
VPS11-207ENST00000620429 A0A087WWV3 80 aa11.72□□□□□ -0.53
VPS11-207ENST00000620429 CYP27B1O15528 508 aa11.72□□□□□ -0.53
VPS11-207ENST00000620429 PDIA6Q15084 440 aa11.72□□□□□ -0.53
VPS11-207ENST00000620429 ZNF790Q6PG37 636 aa11.72□□□□□ -0.53
VPS11-207ENST00000620429 MICALCLQ6ZW33 695 aa11.72□□□□□ -0.53
VPS11-207ENST00000620429 CCDC12Q8WUD4 166 aaPredicted RBP11.72□□□□□ -0.53
VPS11-207ENST00000620429 ALDH8A1Q9H2A2 487 aaPredicted RBP11.72□□□□□ -0.53
VPS11-207ENST00000620429 SUDS3Q9H7L9 328 aaPredicted RBP11.72□□□□□ -0.53
VPS11-207ENST00000620429 HPCAL4Q9UM19 191 aa11.72□□□□□ -0.53
VPS11-207ENST00000620429 SKAP2O75563 359 aaPredicted RBP11.72□□□□□ -0.53
VPS11-207ENST00000620429 SLC8A1P32418 973 aa11.72□□□□□ -0.53
VPS11-207ENST00000620429 FOSBP53539 338 aa11.72□□□□□ -0.53
VPS11-207ENST00000620429 CCAR1Q8IX12 1150 aaKnown RBP11.72□□□□□ -0.53
VPS11-207ENST00000620429 C3orf20Q8ND61 904 aa11.72□□□□□ -0.53
VPS11-207ENST00000620429 LMBR1Q8WVP7 490 aa11.72□□□□□ -0.53
VPS11-207ENST00000620429 EAF2Q96CJ1 260 aaPredicted RBP11.72□□□□□ -0.53
VPS11-207ENST00000620429 HOOK2Q96ED9 719 aa11.72□□□□□ -0.53
VPS11-207ENST00000620429 CRACR2AQ9BSW2 395 aa11.72□□□□□ -0.53
VPS11-207ENST00000620429 SLC52A2Q9HAB3 445 aa11.72□□□□□ -0.53
VPS11-207ENST00000620429 ANAPC4Q9UJX5 808 aa11.72□□□□□ -0.53
VPS11-207ENST00000620429 CDR1P51861 262 aa11.71□□□□□ -0.53
VPS11-207ENST00000620429 G3BP1Q13283 466 aaKnown RBP eCLIP11.71□□□□□ -0.531e-6■■■■□ 23
VPS11-207ENST00000620429 DRP2Q13474 957 aa11.71□□□□□ -0.53
VPS11-207ENST00000620429 CCDC96Q2M329 555 aa11.71□□□□□ -0.53
VPS11-207ENST00000620429 KSR2Q6VAB6 950 aa11.71□□□□□ -0.53
VPS11-207ENST00000620429 SPDYE1Q8NFV5 336 aaPredicted RBP11.71□□□□□ -0.53
VPS11-207ENST00000620429 FBXW7Q969H0 707 aa11.71□□□□□ -0.53
VPS11-207ENST00000620429 ZNF496Q96IT1 587 aaPredicted RBP11.71□□□□□ -0.53
VPS11-207ENST00000620429 ZSWIM4Q9H7M6 989 aa11.71□□□□□ -0.53
VPS11-207ENST00000620429 HMG20BQ9P0W2 317 aa11.71□□□□□ -0.53
VPS11-207ENST00000620429 FRMD3A2A2Y4 597 aa11.71□□□□□ -0.54
VPS11-207ENST00000620429 RTN3O95197 1032 aaPredicted RBP11.71□□□□□ -0.54
VPS11-207ENST00000620429 SETSIPP0DME0 302 aa11.71□□□□□ -0.54
VPS11-207ENST00000620429 SNX1Q13596 522 aa11.71□□□□□ -0.54
VPS11-207ENST00000620429 CCDC73Q6ZRK6 1079 aa11.71□□□□□ -0.54
VPS11-207ENST00000620429 ZNF589Q86UQ0 364 aaPredicted RBP11.71□□□□□ -0.54
VPS11-207ENST00000620429 CEP57Q86XR8 500 aa11.71□□□□□ -0.54
VPS11-207ENST00000620429 RSRC1Q96IZ7 334 aaKnown RBP11.71□□□□□ -0.54
VPS11-207ENST00000620429 SH3GL2Q99962 352 aa11.71□□□□□ -0.54
VPS11-207ENST00000620429 SLC40A1Q9NP59 571 aa11.71□□□□□ -0.54
VPS11-207ENST00000620429 TLR7Q9NYK1 1049 aaKnown RBP11.71□□□□□ -0.54
VPS11-207ENST00000620429 PUF60Q9UHX1 559 aaKnown RBP11.71□□□□□ -0.54
VPS11-207ENST00000620429 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.71□□□□□ -0.54
VPS11-207ENST00000620429 SASH1O94885 1247 aa11.7□□□□□ -0.54
VPS11-207ENST00000620429 FAM228AQ86W67 206 aa11.7□□□□□ -0.54
VPS11-207ENST00000620429 PARP9Q8IXQ6 854 aa11.7□□□□□ -0.54
VPS11-207ENST00000620429 ENGASEQ8NFI3 743 aa11.7□□□□□ -0.54
VPS11-207ENST00000620429 ZNF526Q8TF50 670 aaPredicted RBP11.7□□□□□ -0.54
VPS11-207ENST00000620429 PRDM16Q9HAZ2 1276 aa11.7□□□□□ -0.54
VPS11-207ENST00000620429 GGA2Q9UJY4 613 aa11.7□□□□□ -0.54
VPS11-207ENST00000620429 TBC1D2BQ9UPU7 963 aa11.7□□□□□ -0.54
VPS11-207ENST00000620429 H7C1W4 665 aa11.7□□□□□ -0.54
VPS11-207ENST00000620429 STX10O60499 249 aa11.7□□□□□ -0.54
VPS11-207ENST00000620429 GBP2P32456 591 aaPredicted RBP11.7□□□□□ -0.54
VPS11-207ENST00000620429 FANCCQ00597 558 aa11.7□□□□□ -0.54
VPS11-207ENST00000620429 KCNB1Q14721 858 aa11.7□□□□□ -0.54
VPS11-207ENST00000620429 Q6ZUG5 572 aa11.7□□□□□ -0.54
VPS11-207ENST00000620429 FTOQ9C0B1 505 aaKnown RBP eCLIP11.7□□□□□ -0.54
VPS11-207ENST00000620429 SNRKQ9NRH2 765 aa11.7□□□□□ -0.54
VPS11-207ENST00000620429 SPATA31A5Q5VU36 1347 aa11.7□□□□□ -0.54
VPS11-207ENST00000620429 SPATA31A7Q8IWB4 1347 aa11.7□□□□□ -0.54
VPS11-207ENST00000620429 OVOS2A0A0G2JMS6 1433 aa11.7□□□□□ -0.54
VPS11-207ENST00000620429 PARP4Q9UKK3 1724 aaKnown RBP11.69□□□□□ -0.54
VPS11-207ENST00000620429 GOLGA6CA6NDK9 693 aa11.69□□□□□ -0.54
VPS11-207ENST00000620429 CBFA2T2O43439 604 aa11.69□□□□□ -0.54
VPS11-207ENST00000620429 AHCYL1O43865 530 aa11.69□□□□□ -0.54
VPS11-207ENST00000620429 ZEB2O60315 1214 aa11.69□□□□□ -0.54
VPS11-207ENST00000620429 ZNF202O95125 648 aa11.69□□□□□ -0.54
VPS11-207ENST00000620429 FESP07332 822 aa11.69□□□□□ -0.54
VPS11-207ENST00000620429 GOLGA6DP0CG33 693 aa11.69□□□□□ -0.54
VPS11-207ENST00000620429 IMPDH2P12268 514 aa11.69□□□□□ -0.54
VPS11-207ENST00000620429 IRX2Q9BZI1 471 aaPredicted RBP11.69□□□□□ -0.54
VPS11-207ENST00000620429 SIL1Q9H173 461 aa11.69□□□□□ -0.54
VPS11-207ENST00000620429 GOLPH3LQ9H4A5 285 aa11.69□□□□□ -0.54
VPS11-207ENST00000620429 DDX21Q9NR30 783 aaKnown RBP eCLIP11.69□□□□□ -0.54
VPS11-207ENST00000620429 GOLGA6AQ9NYA3 693 aa11.69□□□□□ -0.54
VPS11-207ENST00000620429 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.69□□□□□ -0.54
VPS11-207ENST00000620429 MYH15Q9Y2K3 1946 aa11.69□□□□□ -0.54
VPS11-207ENST00000620429 COL18A1P39060 1754 aa11.69□□□□□ -0.54
VPS11-207ENST00000620429 MED23Q9ULK4 1368 aa11.69□□□□□ -0.54
VPS11-207ENST00000620429 RHOXF2BP0C7M4 288 aa11.69□□□□□ -0.54
VPS11-207ENST00000620429 MCM3P25205 808 aa11.69□□□□□ -0.54
VPS11-207ENST00000620429 FAM160A1Q05DH4 1040 aa11.69□□□□□ -0.54
VPS11-207ENST00000620429 KRT32Q14532 448 aa11.69□□□□□ -0.54
VPS11-207ENST00000620429 NCAPHQ15003 741 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms