RNA–Protein interactions for RNA: ENST00000618856.1

NEK3-209, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-209ENST00000618856 PTPRFP10586 1907 aa9.93□□□□□ -0.82
NEK3-209ENST00000618856 ATAD5Q96QE3 1844 aa9.93□□□□□ -0.82
NEK3-209ENST00000618856 ROBO3Q96MS0 1386 aa9.92□□□□□ -0.82
NEK3-209ENST00000618856 PATL2C9JE40 543 aaKnown RBP9.92□□□□□ -0.82
NEK3-209ENST00000618856 BTBD19C9JJ37 291 aa9.92□□□□□ -0.82
NEK3-209ENST00000618856 ASNSP08243 561 aa9.92□□□□□ -0.82
NEK3-209ENST00000618856 SH3D19Q5HYK7 790 aa9.92□□□□□ -0.82
NEK3-209ENST00000618856 CTR9Q6PD62 1173 aa9.92□□□□□ -0.82
NEK3-209ENST00000618856 ANKRD23Q86SG2 305 aa9.92□□□□□ -0.82
NEK3-209ENST00000618856 SEC62Q99442 399 aaKnown RBP9.92□□□□□ -0.82
NEK3-209ENST00000618856 EPB41L4AQ9HCS5 686 aaPredicted RBP9.92□□□□□ -0.82
NEK3-209ENST00000618856 HELLSQ9NRZ9 838 aa9.92□□□□□ -0.82
NEK3-209ENST00000618856 SWAP70Q9UH65 585 aa9.92□□□□□ -0.82
NEK3-209ENST00000618856 TSKSQ9UJT2 592 aa9.92□□□□□ -0.82
NEK3-209ENST00000618856 ZBTB21Q9ULJ3 1066 aa9.92□□□□□ -0.82
NEK3-209ENST00000618856 SLC45A1Q9Y2W3 748 aa9.92□□□□□ -0.82
NEK3-209ENST00000618856 SLC4A4Q9Y6R1 1079 aa9.92□□□□□ -0.82
NEK3-209ENST00000618856 ZHX2Q9Y6X8 837 aa9.92□□□□□ -0.82
NEK3-209ENST00000618856 LOC285556D6RIA3 1793 aa9.91□□□□□ -0.82
NEK3-209ENST00000618856 ADGRA2Q96PE1 1338 aa9.91□□□□□ -0.82
NEK3-209ENST00000618856 HTTP42858 3142 aa9.91□□□□□ -0.82
NEK3-209ENST00000618856 USP17L5A8MUK1 530 aa9.91□□□□□ -0.82
NEK3-209ENST00000618856 USP17L12C9JPN9 530 aa9.91□□□□□ -0.82
NEK3-209ENST00000618856 USP17L21D6R901 530 aa9.91□□□□□ -0.82
NEK3-209ENST00000618856 SMIM22K7EJ46 135 aa9.91□□□□□ -0.82
NEK3-209ENST00000618856 TBC1D8O95759 1140 aa9.91□□□□□ -0.82
NEK3-209ENST00000618856 CYP2D6P10635 497 aa9.91□□□□□ -0.82
NEK3-209ENST00000618856 GUCY1A2P33402 732 aa9.91□□□□□ -0.82
NEK3-209ENST00000618856 SHROOM1Q2M3G4 852 aaPredicted RBP9.91□□□□□ -0.82
NEK3-209ENST00000618856 OTUD7BQ6GQQ9 843 aa9.91□□□□□ -0.82
NEK3-209ENST00000618856 C16orf86Q6ZW13 317 aa9.91□□□□□ -0.82
NEK3-209ENST00000618856 CRACR2BQ8N4Y2 399 aaPredicted RBP9.91□□□□□ -0.82
NEK3-209ENST00000618856 ZNF280CQ8ND82 737 aa9.91□□□□□ -0.82
NEK3-209ENST00000618856 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.91□□□□□ -0.82
NEK3-209ENST00000618856 ARPP21Q9UBL0 812 aaPredicted RBP9.91□□□□□ -0.82
NEK3-209ENST00000618856 BAZ2AQ9UIF9 1905 aaKnown RBP9.9□□□□□ -0.82
NEK3-209ENST00000618856 GPR25O00155 361 aa9.9□□□□□ -0.82
NEK3-209ENST00000618856 POLR3DP05423 398 aaPredicted RBP9.9□□□□□ -0.82
NEK3-209ENST00000618856 GSPT1P15170 499 aaKnown RBP9.9□□□□□ -0.82
NEK3-209ENST00000618856 SDSP20132 328 aa9.9□□□□□ -0.82
NEK3-209ENST00000618856 CRHR2Q13324 411 aa9.9□□□□□ -0.82
NEK3-209ENST00000618856 ALX1Q15699 326 aa9.9□□□□□ -0.82
NEK3-209ENST00000618856 CERKLQ49MI3 558 aaPredicted RBP9.9□□□□□ -0.82
NEK3-209ENST00000618856 CENPQQ7L2Z9 268 aaPredicted RBP9.9□□□□□ -0.82
NEK3-209ENST00000618856 FASTKD5Q7L8L6 764 aaKnown RBP9.9□□□□□ -0.82
NEK3-209ENST00000618856 CCDC84Q86UT8 332 aaPredicted RBP9.9□□□□□ -0.82
NEK3-209ENST00000618856 IFNL3Q8IZI9 196 aa9.9□□□□□ -0.82
NEK3-209ENST00000618856 PROCA1Q8NCQ7 364 aaPredicted RBP9.9□□□□□ -0.82
NEK3-209ENST00000618856 GREB1LQ9C091 1923 aaPredicted RBP9.9□□□□□ -0.83
NEK3-209ENST00000618856 ZMYM6O95789 1325 aa9.89□□□□□ -0.83
NEK3-209ENST00000618856 CYP2D7A0A087X1C5 515 aa9.89□□□□□ -0.83
NEK3-209ENST00000618856 A0A0D9SFI3 127 aa9.89□□□□□ -0.83
NEK3-209ENST00000618856 TLR2O60603 784 aa9.89□□□□□ -0.83
NEK3-209ENST00000618856 GDF11O95390 407 aa9.89□□□□□ -0.83
NEK3-209ENST00000618856 GH2P01242 217 aa9.89□□□□□ -0.83
NEK3-209ENST00000618856 BACE1P56817 501 aa9.89□□□□□ -0.83
NEK3-209ENST00000618856 SPP2Q13103 211 aa9.89□□□□□ -0.83
NEK3-209ENST00000618856 SLC4A8Q2Y0W8 1093 aa9.89□□□□□ -0.83
NEK3-209ENST00000618856 MCMDC2Q4G0Z9 681 aa9.89□□□□□ -0.83
NEK3-209ENST00000618856 TTC22Q5TAA0 569 aa9.89□□□□□ -0.83
NEK3-209ENST00000618856 C17orf99Q6UX52 265 aa9.89□□□□□ -0.83
NEK3-209ENST00000618856 SIAH1Q8IUQ4 282 aa9.89□□□□□ -0.83
NEK3-209ENST00000618856 ZNF296Q8WUU4 475 aaPredicted RBP9.89□□□□□ -0.83
NEK3-209ENST00000618856 DYNLL2Q96FJ2 89 aa9.89□□□□□ -0.83
NEK3-209ENST00000618856 C12orf42Q96LP6 360 aa9.89□□□□□ -0.83
NEK3-209ENST00000618856 FAM227BQ96M60 508 aa9.89□□□□□ -0.83
NEK3-209ENST00000618856 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.89□□□□□ -0.83
NEK3-209ENST00000618856 AS3MTQ9HBK9 375 aa9.89□□□□□ -0.83
NEK3-209ENST00000618856 TRIM75PA6NK02 468 aa9.88□□□□□ -0.83
NEK3-209ENST00000618856 C19orf81C9J6K1 198 aa9.88□□□□□ -0.83
NEK3-209ENST00000618856 PDHXO00330 501 aa9.88□□□□□ -0.83
NEK3-209ENST00000618856 FGRP09769 529 aa9.88□□□□□ -0.83
NEK3-209ENST00000618856 HOXA7P31268 230 aaPredicted RBP9.88□□□□□ -0.83
NEK3-209ENST00000618856 CDK8P49336 464 aa9.88□□□□□ -0.83
NEK3-209ENST00000618856 NMIQ13287 307 aaPredicted RBP9.88□□□□□ -0.83
NEK3-209ENST00000618856 ABCB5Q2M3G0 1257 aa9.88□□□□□ -0.83
NEK3-209ENST00000618856 VPS53Q5VIR6 699 aa9.88□□□□□ -0.83
NEK3-209ENST00000618856 CCDC129Q6ZRS4 1044 aa9.88□□□□□ -0.83
NEK3-209ENST00000618856 SLC44A5Q8NCS7 719 aa9.88□□□□□ -0.83
NEK3-209ENST00000618856 DDRGK1Q96HY6 314 aa9.88□□□□□ -0.83
NEK3-209ENST00000618856 CCDC17Q96LX7 622 aa9.88□□□□□ -0.83
NEK3-209ENST00000618856 TRIM34Q9BYJ4 488 aa9.88□□□□□ -0.83
NEK3-209ENST00000618856 KIAA1683Q9H0B3 1180 aa9.88□□□□□ -0.83
NEK3-209ENST00000618856 ZFYVE28Q9HCC9 887 aa9.88□□□□□ -0.83
NEK3-209ENST00000618856 EMILIN3Q9NT22 766 aa9.88□□□□□ -0.83
NEK3-209ENST00000618856 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.88□□□□□ -0.83
NEK3-209ENST00000618856 ANAPC4Q9UJX5 808 aa9.88□□□□□ -0.83
NEK3-209ENST00000618856 AGTPBP1Q9UPW5 1226 aa9.88□□□□□ -0.83
NEK3-209ENST00000618856 CASP8AP2Q9UKL3 1982 aa9.87□□□□□ -0.83
NEK3-209ENST00000618856 IGKV6D-41A0A0C4DH26 115 aa9.87□□□□□ -0.83
NEK3-209ENST00000618856 TRIM6-TRIM34B2RNG4 842 aa9.87□□□□□ -0.83
NEK3-209ENST00000618856 USP17L10C9JJH3 530 aa9.87□□□□□ -0.83
NEK3-209ENST00000618856 HIP1O00291 1037 aa9.87□□□□□ -0.83
NEK3-209ENST00000618856 FKTNO75072 461 aa9.87□□□□□ -0.83
NEK3-209ENST00000618856 HSPD1P10809 573 aaKnown RBP9.87□□□□□ -0.83
NEK3-209ENST00000618856 AKR1B1P15121 316 aa9.87□□□□□ -0.83
NEK3-209ENST00000618856 CAP1Q01518 475 aa9.87□□□□□ -0.83
NEK3-209ENST00000618856 TAF1CQ15572 869 aaPredicted RBP9.87□□□□□ -0.83
NEK3-209ENST00000618856 TREML2Q5T2D2 321 aa9.87□□□□□ -0.83
NEK3-209ENST00000618856 ERICH6BQ5W0A0 696 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms