RNA–Protein interactions for RNA: ENST00000617617.4

PDPN-211, Transcript of podoplanin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDPN, Length 2,808 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-211ENST00000617617 ERICH2A1L162 156 aa13.78□□□□□ -0.2
PDPN-211ENST00000617617 IFIT3O14879 490 aaKnown RBP13.78□□□□□ -0.2
PDPN-211ENST00000617617 SLC4A3P48751 1232 aa13.78□□□□□ -0.2
PDPN-211ENST00000617617 WTAPQ15007 396 aa13.78□□□□□ -0.2
PDPN-211ENST00000617617 KIF4BQ2VIQ3 1234 aa13.78□□□□□ -0.2
PDPN-211ENST00000617617 ZFPM1Q8IX07 1006 aa13.78□□□□□ -0.2
PDPN-211ENST00000617617 ENAHQ8N8S7 591 aaPredicted RBP13.78□□□□□ -0.2
PDPN-211ENST00000617617 DYNLL2Q96FJ2 89 aa13.78□□□□□ -0.2
PDPN-211ENST00000617617 UBAC1Q9BSL1 405 aa13.78□□□□□ -0.2
PDPN-211ENST00000617617 TNKSO95271 1327 aa13.78□□□□□ -0.2
PDPN-211ENST00000617617 DDTLA6NHG4 134 aaPredicted RBP13.77□□□□□ -0.2
PDPN-211ENST00000617617 DDAH1O94760 285 aa13.77□□□□□ -0.2
PDPN-211ENST00000617617 APOBRQ0VD83 1088 aa13.77□□□□□ -0.2
PDPN-211ENST00000617617 APOA5Q6Q788 366 aa13.77□□□□□ -0.2
PDPN-211ENST00000617617 ZNF444Q8N0Y2 327 aaPredicted RBP13.77□□□□□ -0.2
PDPN-211ENST00000617617 MKNK2Q9HBH9 465 aa13.77□□□□□ -0.2
PDPN-211ENST00000617617 PHIPQ8WWQ0 1821 aa13.77□□□□□ -0.2
PDPN-211ENST00000617617 CALM1P0DP23 149 aa13.77□□□□□ -0.21
PDPN-211ENST00000617617 CALM2P0DP24 149 aa13.77□□□□□ -0.21
PDPN-211ENST00000617617 CALM3P0DP25 149 aa13.77□□□□□ -0.21
PDPN-211ENST00000617617 APOBEC3FQ8IUX4 373 aaKnown RBP13.77□□□□□ -0.21
PDPN-211ENST00000617617 GINM1Q9NU53 330 aa13.77□□□□□ -0.21
PDPN-211ENST00000617617 GJA3Q9Y6H8 435 aa13.77□□□□□ -0.21
PDPN-211ENST00000617617 DHX16O60231 1041 aaKnown RBP13.77□□□□□ -0.21
PDPN-211ENST00000617617 FGD1P98174 961 aa13.77□□□□□ -0.21
PDPN-211ENST00000617617 SCRN1Q12765 414 aa13.77□□□□□ -0.21
PDPN-211ENST00000617617 NBPF9Q3BBW0 867 aa13.77□□□□□ -0.21
PDPN-211ENST00000617617 RCSD1Q6JBY9 416 aa13.77□□□□□ -0.21
PDPN-211ENST00000617617 CHST3Q7LGC8 479 aa13.77□□□□□ -0.21
PDPN-211ENST00000617617 LRRC2Q9BYS8 371 aa13.77□□□□□ -0.21
PDPN-211ENST00000617617 SLKQ9H2G2 1235 aaPredicted RBP13.77□□□□□ -0.21
PDPN-211ENST00000617617 DNAJC18Q9H819 358 aa13.77□□□□□ -0.21
PDPN-211ENST00000617617 IL17RBQ9NRM6 502 aa13.77□□□□□ -0.21
PDPN-211ENST00000617617 ADARB2Q9NS39 739 aaKnown RBP13.77□□□□□ -0.21
PDPN-211ENST00000617617 CHMP5Q9NZZ3 219 aa13.77□□□□□ -0.21
PDPN-211ENST00000617617 SHTN1A0MZ66 631 aa13.76□□□□□ -0.21
PDPN-211ENST00000617617 RANBP6O60518 1105 aaKnown RBP13.76□□□□□ -0.21
PDPN-211ENST00000617617 TFAP4Q01664 338 aa13.76□□□□□ -0.21
PDPN-211ENST00000617617 GPR162Q16538 588 aa13.76□□□□□ -0.21
PDPN-211ENST00000617617 RRP12Q5JTH9 1297 aaKnown RBP13.76□□□□□ -0.21
PDPN-211ENST00000617617 KLF18A0A0U1RQI7 1052 aa13.76□□□□□ -0.21
PDPN-211ENST00000617617 TSPY2A6NKD2 308 aa13.76□□□□□ -0.21
PDPN-211ENST00000617617 TEPSINQ96N21 525 aa13.75□□□□□ -0.21
PDPN-211ENST00000617617 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.75□□□□□ -0.21
PDPN-211ENST00000617617 GPHNQ9NQX3 736 aaPredicted RBP13.75□□□□□ -0.21
PDPN-211ENST00000617617 CCDC69A6NI79 296 aa13.75□□□□□ -0.21
PDPN-211ENST00000617617 TSPY3P0CV98 308 aa13.75□□□□□ -0.21
PDPN-211ENST00000617617 TSPY8P0CW00 308 aa13.75□□□□□ -0.21
PDPN-211ENST00000617617 CACNB3P54284 484 aa13.75□□□□□ -0.21
PDPN-211ENST00000617617 SLC12A7Q9Y666 1083 aa13.75□□□□□ -0.21
PDPN-211ENST00000617617 STK36Q9NRP7 1315 aa13.75□□□□□ -0.21
PDPN-211ENST00000617617 OTOFQ9HC10 1997 aa13.74□□□□□ -0.21
PDPN-211ENST00000617617 GLTPD2A6NH11 291 aa13.74□□□□□ -0.21
PDPN-211ENST00000617617 ZBTB43O43298 467 aa13.74□□□□□ -0.21
PDPN-211ENST00000617617 PRDM1O75626 825 aa13.74□□□□□ -0.21
PDPN-211ENST00000617617 HSP90AA1P07900 732 aaKnown RBP13.74□□□□□ -0.21
PDPN-211ENST00000617617 HMGN5P82970 282 aaKnown RBP13.74□□□□□ -0.21
PDPN-211ENST00000617617 IFIT1BQ5T764 474 aaKnown RBP13.74□□□□□ -0.21
PDPN-211ENST00000617617 DPY19L2Q6NUT2 758 aa13.74□□□□□ -0.21
PDPN-211ENST00000617617 SLC44A5Q8NCS7 719 aa13.74□□□□□ -0.21
PDPN-211ENST00000617617 HOOK2Q96ED9 719 aa13.74□□□□□ -0.21
PDPN-211ENST00000617617 TOMM22Q9NS69 142 aa13.74□□□□□ -0.21
PDPN-211ENST00000617617 EGFRP00533 1210 aa13.74□□□□□ -0.21
PDPN-211ENST00000617617 NUCB2P80303 420 aa13.74□□□□□ -0.21
PDPN-211ENST00000617617 USP50Q70EL3 339 aaPredicted RBP13.74□□□□□ -0.21
PDPN-211ENST00000617617 CCDC83Q8IWF9 413 aa13.74□□□□□ -0.21
PDPN-211ENST00000617617 ZNF654Q8IZM8 581 aa13.74□□□□□ -0.21
PDPN-211ENST00000617617 MKL1Q969V6 931 aa13.74□□□□□ -0.21
PDPN-211ENST00000617617 SENP2Q9HC62 589 aa13.74□□□□□ -0.21
PDPN-211ENST00000617617 RBM28Q9NW13 759 aaKnown RBP13.74□□□□□ -0.21
PDPN-211ENST00000617617 CCDC196A0A1B0GTZ2 297 aa13.73□□□□□ -0.21
PDPN-211ENST00000617617 GOLGA8BA8MQT2 603 aa13.73□□□□□ -0.21
PDPN-211ENST00000617617 LMOD1P29536 600 aaPredicted RBP13.73□□□□□ -0.21
PDPN-211ENST00000617617 TROAPQ12815 778 aa13.73□□□□□ -0.21
PDPN-211ENST00000617617 SYNE3Q6ZMZ3 975 aa13.73□□□□□ -0.21
PDPN-211ENST00000617617 NSUN7Q8NE18 718 aaKnown RBP13.73□□□□□ -0.21
PDPN-211ENST00000617617 ZC3H15Q8WU90 426 aaKnown RBP13.73□□□□□ -0.21
PDPN-211ENST00000617617 CSRNP1Q96S65 589 aa13.73□□□□□ -0.21
PDPN-211ENST00000617617 FAM217BQ9NTX9 383 aaPredicted RBP13.73□□□□□ -0.21
PDPN-211ENST00000617617 HACL1Q9UJ83 578 aa13.73□□□□□ -0.21
PDPN-211ENST00000617617 CLRN2A0PK11 232 aa13.73□□□□□ -0.21
PDPN-211ENST00000617617 TCP10L2B9ZVM9 353 aa13.73□□□□□ -0.21
PDPN-211ENST00000617617 CDKL5O76039 1030 aa13.73□□□□□ -0.21
PDPN-211ENST00000617617 CTDNEP1O95476 244 aa13.73□□□□□ -0.21
PDPN-211ENST00000617617 TCP10Q12799 353 aa13.73□□□□□ -0.21
PDPN-211ENST00000617617 FAM47AQ5JRC9 791 aa13.73□□□□□ -0.21
PDPN-211ENST00000617617 CLEC17AQ6ZS10 378 aa13.73□□□□□ -0.21
PDPN-211ENST00000617617 SAMD7Q7Z3H4 446 aa13.73□□□□□ -0.21
PDPN-211ENST00000617617 DDNO94850 711 aaPredicted RBP13.72□□□□□ -0.21
PDPN-211ENST00000617617 SMARCA1P28370 1054 aa13.72□□□□□ -0.21
PDPN-211ENST00000617617 METAP2P50579 478 aaKnown RBP eCLIP13.72□□□□□ -0.21
PDPN-211ENST00000617617 RAB3GAP1Q15042 981 aa13.72□□□□□ -0.21
PDPN-211ENST00000617617 NTRK3Q16288 839 aa13.72□□□□□ -0.21
PDPN-211ENST00000617617 CATIPQ7Z7H3 387 aa13.72□□□□□ -0.21
PDPN-211ENST00000617617 NECAB1Q8N987 351 aa13.72□□□□□ -0.21
PDPN-211ENST00000617617 TRPM4Q8TD43 1214 aa13.72□□□□□ -0.21
PDPN-211ENST00000617617 MTMR4Q9NYA4 1195 aa13.72□□□□□ -0.21
PDPN-211ENST00000617617 SMC3Q9UQE7 1217 aa13.72□□□□□ -0.21
PDPN-211ENST00000617617 TOP1P11387 765 aaKnown RBP13.72□□□□□ -0.21
PDPN-211ENST00000617617 HIRAP54198 1017 aaPredicted RBP13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms