RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 SLF2Q8IX21 1173 aa6.88□□□□□ -1.31
CPNE3-208ENST00000614678 CRACR2BQ8N4Y2 399 aaPredicted RBP6.88□□□□□ -1.31
CPNE3-208ENST00000614678 CHMP4BQ9H444 224 aaKnown RBP6.88□□□□□ -1.31
CPNE3-208ENST00000614678 TAF6LQ9Y6J9 622 aa6.88□□□□□ -1.31
CPNE3-208ENST00000614678 MINDY4BA8MYZ0 360 aa6.88□□□□□ -1.31
CPNE3-208ENST00000614678 TRIM6-TRIM34B2RNG4 842 aa6.88□□□□□ -1.31
CPNE3-208ENST00000614678 PDHXO00330 501 aa6.88□□□□□ -1.31
CPNE3-208ENST00000614678 RNF113AO15541 343 aaKnown RBP6.88□□□□□ -1.31
CPNE3-208ENST00000614678 GABPAQ06546 454 aa6.88□□□□□ -1.31
CPNE3-208ENST00000614678 DCAF15Q66K64 600 aa6.88□□□□□ -1.31
CPNE3-208ENST00000614678 SPICE1Q8N0Z3 855 aa6.88□□□□□ -1.31
CPNE3-208ENST00000614678 CEP290O15078 2479 aa6.88□□□□□ -1.31
CPNE3-208ENST00000614678 NMT2O60551 498 aa6.87□□□□□ -1.31
CPNE3-208ENST00000614678 POLR3DP05423 398 aaPredicted RBP6.87□□□□□ -1.31
CPNE3-208ENST00000614678 CTDSPL2Q05D32 466 aa6.87□□□□□ -1.31
CPNE3-208ENST00000614678 NMIQ13287 307 aaPredicted RBP6.87□□□□□ -1.31
CPNE3-208ENST00000614678 TTF1Q15361 905 aaPredicted RBP6.87□□□□□ -1.31
CPNE3-208ENST00000614678 TAF1CQ15572 869 aaPredicted RBP6.87□□□□□ -1.31
CPNE3-208ENST00000614678 SAMD1Q6SPF0 538 aaPredicted RBP6.87□□□□□ -1.31
CPNE3-208ENST00000614678 GCC1Q96CN9 775 aa6.87□□□□□ -1.31
CPNE3-208ENST00000614678 NOL10Q9BSC4 688 aaKnown RBP6.87□□□□□ -1.31
CPNE3-208ENST00000614678 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.87□□□□□ -1.31
CPNE3-208ENST00000614678 RWDD1Q9H446 243 aaPredicted RBP6.87□□□□□ -1.31
CPNE3-208ENST00000614678 TXNRD2Q9NNW7 524 aa6.87□□□□□ -1.31
CPNE3-208ENST00000614678 SERPINB13Q9UIV8 391 aa6.87□□□□□ -1.31
CPNE3-208ENST00000614678 ZBTB21Q9ULJ3 1066 aa6.87□□□□□ -1.31
CPNE3-208ENST00000614678 TESPA1A2RU30 521 aaPredicted RBP6.87□□□□□ -1.31
CPNE3-208ENST00000614678 HAND2P61296 217 aa6.87□□□□□ -1.31
CPNE3-208ENST00000614678 PPATQ06203 517 aa6.87□□□□□ -1.31
CPNE3-208ENST00000614678 PPIL2Q13356 520 aa6.87□□□□□ -1.31
CPNE3-208ENST00000614678 UBE3CQ15386 1083 aa6.87□□□□□ -1.31
CPNE3-208ENST00000614678 STAP2Q9UGK3 403 aa6.87□□□□□ -1.31
CPNE3-208ENST00000614678 MPHOSPH10O00566 681 aaKnown RBP6.87□□□□□ -1.31
CPNE3-208ENST00000614678 CTNND1O60716 968 aaKnown RBP6.87□□□□□ -1.31
CPNE3-208ENST00000614678 GLRX3O76003 335 aaKnown RBP6.87□□□□□ -1.31
CPNE3-208ENST00000614678 APPP05067 770 aa6.87□□□□□ -1.31
CPNE3-208ENST00000614678 TAL1P17542 331 aaPredicted RBP6.87□□□□□ -1.31
CPNE3-208ENST00000614678 FAM47AQ5JRC9 791 aa6.87□□□□□ -1.31
CPNE3-208ENST00000614678 CWC27Q6UX04 472 aaKnown RBP6.87□□□□□ -1.31
CPNE3-208ENST00000614678 EMILIN3Q9NT22 766 aa6.87□□□□□ -1.31
CPNE3-208ENST00000614678 KCNH4Q9UQ05 1017 aa6.87□□□□□ -1.31
CPNE3-208ENST00000614678 VCANP13611 3396 aa6.86□□□□□ -1.31
CPNE3-208ENST00000614678 MANSC4A6NHS7 340 aaPredicted RBP6.86□□□□□ -1.31
CPNE3-208ENST00000614678 NOL9Q5SY16 702 aaKnown RBP6.86□□□□□ -1.31
CPNE3-208ENST00000614678 TATDN1Q6P1N9 297 aa6.86□□□□□ -1.31
CPNE3-208ENST00000614678 METTL16Q86W50 562 aaKnown RBP6.86□□□□□ -1.31
CPNE3-208ENST00000614678 NBPF3Q9H094 633 aa6.86□□□□□ -1.31
CPNE3-208ENST00000614678 PICK1Q9NRD5 415 aa6.86□□□□□ -1.31
CPNE3-208ENST00000614678 TTC41PQ6P2S7 1318 aa6.86□□□□□ -1.31
CPNE3-208ENST00000614678 LAMB1P07942 1786 aa6.86□□□□□ -1.31
CPNE3-208ENST00000614678 A0A0G2JLL6 359 aaPredicted RBP6.86□□□□□ -1.31
CPNE3-208ENST00000614678 GTF2A2P52657 109 aa6.86□□□□□ -1.31
CPNE3-208ENST00000614678 SNAPC2Q13487 334 aa6.86□□□□□ -1.31
CPNE3-208ENST00000614678 Q3C1V9 767 aa6.86□□□□□ -1.31
CPNE3-208ENST00000614678 ZMYM1Q5SVZ6 1142 aa6.86□□□□□ -1.31
CPNE3-208ENST00000614678 C12orf60Q5U649 245 aa6.86□□□□□ -1.31
CPNE3-208ENST00000614678 PRRT2Q7Z6L0 340 aaPredicted RBP6.86□□□□□ -1.31
CPNE3-208ENST00000614678 ANKRD13CQ8N6S4 541 aa6.86□□□□□ -1.31
CPNE3-208ENST00000614678 APPBP2Q92624 585 aa6.86□□□□□ -1.31
CPNE3-208ENST00000614678 ABHD8Q96I13 439 aa6.86□□□□□ -1.31
CPNE3-208ENST00000614678 NUP88Q99567 741 aaPredicted RBP6.86□□□□□ -1.31
CPNE3-208ENST00000614678 CRNKL1Q9BZJ0 848 aaKnown RBP6.86□□□□□ -1.31
CPNE3-208ENST00000614678 CCDC85CA6NKD9 419 aa6.86□□□□□ -1.31
CPNE3-208ENST00000614678 CA12O43570 354 aa6.86□□□□□ -1.31
CPNE3-208ENST00000614678 TBC1D12O60347 775 aa6.86□□□□□ -1.31
CPNE3-208ENST00000614678 CDK8P49336 464 aa6.86□□□□□ -1.31
CPNE3-208ENST00000614678 SOX10P56693 466 aa6.86□□□□□ -1.31
CPNE3-208ENST00000614678 CERKLQ49MI3 558 aaPredicted RBP6.86□□□□□ -1.31
CPNE3-208ENST00000614678 IFNL3Q8IZI9 196 aa6.86□□□□□ -1.31
CPNE3-208ENST00000614678 PRDM10Q9NQV6 1147 aa6.86□□□□□ -1.31
CPNE3-208ENST00000614678 SMCHD1A6NHR9 2005 aa6.86□□□□□ -1.31
CPNE3-208ENST00000614678 SREBF2Q12772 1141 aa6.85□□□□□ -1.31
CPNE3-208ENST00000614678 ZNF280CQ8ND82 737 aa6.85□□□□□ -1.31
CPNE3-208ENST00000614678 TRIM17Q9Y577 477 aa6.85□□□□□ -1.31
CPNE3-208ENST00000614678 NPM3O75607 178 aaKnown RBP6.85□□□□□ -1.31
CPNE3-208ENST00000614678 SDSP20132 328 aa6.85□□□□□ -1.31
CPNE3-208ENST00000614678 ATP2B2Q01814 1243 aa6.85□□□□□ -1.31
CPNE3-208ENST00000614678 GABRQQ9UN88 632 aa6.85□□□□□ -1.31
CPNE3-208ENST00000614678 PDE4DIPQ5VU43 2346 aa6.85□□□□□ -1.31
CPNE3-208ENST00000614678 MYH8P13535 1937 aa6.85□□□□□ -1.31
CPNE3-208ENST00000614678 RAD21O60216 631 aa6.85□□□□□ -1.31
CPNE3-208ENST00000614678 CETPP11597 493 aa6.85□□□□□ -1.31
CPNE3-208ENST00000614678 PLCG2P16885 1265 aa6.85□□□□□ -1.31
CPNE3-208ENST00000614678 OTOP1Q7RTM1 612 aa6.85□□□□□ -1.31
CPNE3-208ENST00000614678 SH3TC2Q8TF17 1288 aa6.85□□□□□ -1.31
CPNE3-208ENST00000614678 TRIM47Q96LD4 638 aa6.85□□□□□ -1.31
CPNE3-208ENST00000614678 P2RX7Q99572 595 aaKnown RBP6.85□□□□□ -1.31
CPNE3-208ENST00000614678 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.85□□□□□ -1.31
CPNE3-208ENST00000614678 DHX36Q9H2U1 1008 aaKnown RBP6.85□□□□□ -1.31
CPNE3-208ENST00000614678 FBXO28Q9NVF7 368 aa6.85□□□□□ -1.31
CPNE3-208ENST00000614678 MTMR7Q9Y216 660 aa6.85□□□□□ -1.31
CPNE3-208ENST00000614678 COL6A3P12111 3177 aa6.85□□□□□ -1.31
CPNE3-208ENST00000614678 TLR2O60603 784 aa6.84□□□□□ -1.31
CPNE3-208ENST00000614678 ABCB5Q2M3G0 1257 aa6.84□□□□□ -1.31
CPNE3-208ENST00000614678 ADGRA2Q96PE1 1338 aa6.84□□□□□ -1.31
CPNE3-208ENST00000614678 USP17L5A8MUK1 530 aa6.84□□□□□ -1.31
CPNE3-208ENST00000614678 IFFO2Q5TF58 517 aa6.84□□□□□ -1.31
CPNE3-208ENST00000614678 C17orf99Q6UX52 265 aa6.84□□□□□ -1.31
CPNE3-208ENST00000614678 FOXP4Q8IVH2 680 aaPredicted RBP6.84□□□□□ -1.31
CPNE3-208ENST00000614678 HERC5Q9UII4 1024 aaKnown RBP6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms