RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 ECM2O94769 699 aaPredicted RBP13.93□□□□□ -0.18
LINC00539-204ENST00000608957 BCRP11274 1271 aa13.93□□□□□ -0.18
LINC00539-204ENST00000608957 PLCD1P51178 756 aa13.93□□□□□ -0.18
LINC00539-204ENST00000608957 SPP2Q13103 211 aa13.93□□□□□ -0.18
LINC00539-204ENST00000608957 FASTKD5Q7L8L6 764 aaKnown RBP13.93□□□□□ -0.18
LINC00539-204ENST00000608957 ZNF280CQ8ND82 737 aa13.93□□□□□ -0.18
LINC00539-204ENST00000608957 OTUD7AQ8TE49 926 aaPredicted RBP13.93□□□□□ -0.18
LINC00539-204ENST00000608957 SDR42E1Q8WUS8 393 aa13.93□□□□□ -0.18
LINC00539-204ENST00000608957 PLXNB2O15031 1838 aa13.92□□□□□ -0.18
LINC00539-204ENST00000608957 USP17L5A8MUK1 530 aa13.92□□□□□ -0.18
LINC00539-204ENST00000608957 HLA-DOAP06340 250 aa13.92□□□□□ -0.18
LINC00539-204ENST00000608957 CERS3Q8IU89 383 aa13.92□□□□□ -0.18
LINC00539-204ENST00000608957 CRACR2BQ8N4Y2 399 aaPredicted RBP13.92□□□□□ -0.18
LINC00539-204ENST00000608957 ARMT1Q9H993 441 aa13.92□□□□□ -0.18
LINC00539-204ENST00000608957 ECHDC1Q9NTX5 307 aa13.92□□□□□ -0.18
LINC00539-204ENST00000608957 ZBTB21Q9ULJ3 1066 aa13.92□□□□□ -0.18
LINC00539-204ENST00000608957 AGTPBP1Q9UPW5 1226 aa13.92□□□□□ -0.18
LINC00539-204ENST00000608957 PTCH2Q9Y6C5 1203 aa13.92□□□□□ -0.18
LINC00539-204ENST00000608957 CENPFP49454 3210 aa13.91□□□□□ -0.18
LINC00539-204ENST00000608957 SMIM22K7EJ46 135 aa13.91□□□□□ -0.18
LINC00539-204ENST00000608957 PRKAB2O43741 272 aa13.91□□□□□ -0.18
LINC00539-204ENST00000608957 MBD4O95243 580 aa13.91□□□□□ -0.18
LINC00539-204ENST00000608957 CYP2D6P10635 497 aa13.91□□□□□ -0.18
LINC00539-204ENST00000608957 SHMT1P34896 483 aa13.91□□□□□ -0.18
LINC00539-204ENST00000608957 HMGCS2P54868 508 aa13.91□□□□□ -0.18
LINC00539-204ENST00000608957 GABPAQ06546 454 aa13.91□□□□□ -0.18
LINC00539-204ENST00000608957 SH3D19Q5HYK7 790 aa13.91□□□□□ -0.18
LINC00539-204ENST00000608957 TATDN1Q6P1N9 297 aa13.91□□□□□ -0.18
LINC00539-204ENST00000608957 TRIM47Q96LD4 638 aa13.91□□□□□ -0.18
LINC00539-204ENST00000608957 PARK7Q99497 189 aaKnown RBP13.91□□□□□ -0.18
LINC00539-204ENST00000608957 WDR18Q9BV38 432 aa13.91□□□□□ -0.18
LINC00539-204ENST00000608957 EHD4Q9H223 541 aa13.91□□□□□ -0.18
LINC00539-204ENST00000608957 DCP1AQ9NPI6 582 aaPredicted RBP13.91□□□□□ -0.18
LINC00539-204ENST00000608957 SLC45A1Q9Y2W3 748 aa13.91□□□□□ -0.18
LINC00539-204ENST00000608957 SALL3Q9BXA9 1300 aa13.9□□□□□ -0.18
LINC00539-204ENST00000608957 PROCA1Q8NCQ7 364 aaPredicted RBP13.9□□□□□ -0.18
LINC00539-204ENST00000608957 TBC1D2Q9BYX2 928 aa13.9□□□□□ -0.18
LINC00539-204ENST00000608957 CRNKL1Q9BZJ0 848 aaKnown RBP13.9□□□□□ -0.18
LINC00539-204ENST00000608957 PUS7LQ9H0K6 701 aaKnown RBP13.9□□□□□ -0.18
LINC00539-204ENST00000608957 SERPINB13Q9UIV8 391 aa13.9□□□□□ -0.18
LINC00539-204ENST00000608957 RLFQ13129 1914 aa13.9□□□□□ -0.18
LINC00539-204ENST00000608957 GREB1LQ9C091 1923 aaPredicted RBP13.9□□□□□ -0.18
LINC00539-204ENST00000608957 PARP14Q460N5 1801 aa13.9□□□□□ -0.18
LINC00539-204ENST00000608957 TNRC18O15417 2968 aaPredicted RBP13.89□□□□□ -0.19
LINC00539-204ENST00000608957 GH2P01242 217 aa13.89□□□□□ -0.19
LINC00539-204ENST00000608957 ASNSP08243 561 aa13.89□□□□□ -0.19
LINC00539-204ENST00000608957 GUCY1A2P33402 732 aa13.89□□□□□ -0.19
LINC00539-204ENST00000608957 MTMR2Q13614 643 aa13.89□□□□□ -0.19
LINC00539-204ENST00000608957 UBE3CQ15386 1083 aa13.89□□□□□ -0.19
LINC00539-204ENST00000608957 PI4K2BQ8TCG2 481 aa13.89□□□□□ -0.19
LINC00539-204ENST00000608957 ARMC5Q96C12 935 aa13.89□□□□□ -0.19
LINC00539-204ENST00000608957 TRIM34Q9BYJ4 488 aa13.89□□□□□ -0.19
LINC00539-204ENST00000608957 POLR3DP05423 398 aaPredicted RBP13.88□□□□□ -0.19
LINC00539-204ENST00000608957 OSBPP22059 807 aa13.88□□□□□ -0.19
LINC00539-204ENST00000608957 PSMC4P43686 418 aa13.88□□□□□ -0.19
LINC00539-204ENST00000608957 BACE1P56817 501 aa13.88□□□□□ -0.19
LINC00539-204ENST00000608957 MLLT1Q03111 559 aaPredicted RBP13.88□□□□□ -0.19
LINC00539-204ENST00000608957 TTC6Q86TZ1 520 aa13.88□□□□□ -0.19
LINC00539-204ENST00000608957 KBTBD3Q8NAB2 608 aa13.88□□□□□ -0.19
LINC00539-204ENST00000608957 SLC44A5Q8NCS7 719 aa13.88□□□□□ -0.19
LINC00539-204ENST00000608957 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.88□□□□□ -0.19
LINC00539-204ENST00000608957 AS3MTQ9HBK9 375 aa13.88□□□□□ -0.19
LINC00539-204ENST00000608957 GINM1Q9NU53 330 aa13.88□□□□□ -0.19
LINC00539-204ENST00000608957 MCM9Q9NXL9 1143 aa13.88□□□□□ -0.19
LINC00539-204ENST00000608957 PDE4DIPQ5VU43 2346 aa13.87□□□□□ -0.19
LINC00539-204ENST00000608957 CYP2D7A0A087X1C5 515 aa13.87□□□□□ -0.19
LINC00539-204ENST00000608957 POTEFA5A3E0 1075 aa13.87□□□□□ -0.19
LINC00539-204ENST00000608957 KIF22Q14807 665 aa13.87□□□□□ -0.19
LINC00539-204ENST00000608957 CERKLQ49MI3 558 aaPredicted RBP13.87□□□□□ -0.19
LINC00539-204ENST00000608957 OSBP2Q969R2 916 aa13.87□□□□□ -0.19
LINC00539-204ENST00000608957 DYNLL2Q96FJ2 89 aa13.87□□□□□ -0.19
LINC00539-204ENST00000608957 ASCC2Q9H1I8 757 aaPredicted RBP13.87□□□□□ -0.19
LINC00539-204ENST00000608957 EMILIN3Q9NT22 766 aa13.87□□□□□ -0.19
LINC00539-204ENST00000608957 GABRQQ9UN88 632 aa13.87□□□□□ -0.19
LINC00539-204ENST00000608957 USP17L10C9JJH3 530 aa13.86□□□□□ -0.19
LINC00539-204ENST00000608957 PEX10O60683 326 aa13.86□□□□□ -0.19
LINC00539-204ENST00000608957 POTEEQ6S8J3 1075 aa13.86□□□□□ -0.19
LINC00539-204ENST00000608957 PLEKHM2Q8IWE5 1019 aa13.86□□□□□ -0.19
LINC00539-204ENST00000608957 ANKRD13CQ8N6S4 541 aa13.86□□□□□ -0.19
LINC00539-204ENST00000608957 ACER1Q8TDN7 264 aa13.86□□□□□ -0.19
LINC00539-204ENST00000608957 SH3TC2Q8TF17 1288 aa13.86□□□□□ -0.19
LINC00539-204ENST00000608957 ZNF333Q96JL9 665 aa13.86□□□□□ -0.19
LINC00539-204ENST00000608957 SRRDQ9UH36 339 aa13.86□□□□□ -0.19
LINC00539-204ENST00000608957 BRCA2P51587 3418 aa13.86□□□□□ -0.19
LINC00539-204ENST00000608957 TTC41PQ6P2S7 1318 aa13.86□□□□□ -0.19
LINC00539-204ENST00000608957 FMNL1O95466 1100 aaPredicted RBP13.85□□□□□ -0.19
LINC00539-204ENST00000608957 HOXA7P31268 230 aaPredicted RBP13.85□□□□□ -0.19
LINC00539-204ENST00000608957 SEPT2Q15019 361 aa13.85□□□□□ -0.19
LINC00539-204ENST00000608957 ARHGEF6Q15052 776 aa13.85□□□□□ -0.19
LINC00539-204ENST00000608957 ABCB5Q2M3G0 1257 aa13.85□□□□□ -0.19
LINC00539-204ENST00000608957 SMCR8Q8TEV9 937 aaPredicted RBP13.85□□□□□ -0.19
LINC00539-204ENST00000608957 GPATCH3Q96I76 525 aa13.85□□□□□ -0.19
LINC00539-204ENST00000608957 STRBPQ96SI9 672 aaKnown RBP13.85□□□□□ -0.19
LINC00539-204ENST00000608957 ATP8A2Q9NTI2 1148 aa13.85□□□□□ -0.19
LINC00539-204ENST00000608957 SLC4A4Q9Y6R1 1079 aa13.85□□□□□ -0.19
LINC00539-204ENST00000608957 MYH4Q9Y623 1939 aa13.85□□□□□ -0.19
LINC00539-204ENST00000608957 MYPNQ86TC9 1320 aa13.85□□□□□ -0.19
LINC00539-204ENST00000608957 COL11A1P12107 1806 aaPredicted RBP13.85□□□□□ -0.19
LINC00539-204ENST00000608957 C19orf81C9J6K1 198 aa13.84□□□□□ -0.19
LINC00539-204ENST00000608957 USP17L12C9JPN9 530 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms