RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 MTMR2Q13614 643 aa9.28□□□□□ -0.92
CUX1-219ENST00000606749 FAM110CQ1W6H9 321 aa9.28□□□□□ -0.92
CUX1-219ENST00000606749 CLASRPQ8N2M8 674 aaKnown RBP9.28□□□□□ -0.92
CUX1-219ENST00000606749 PXYLP1Q8TE99 480 aa9.28□□□□□ -0.92
CUX1-219ENST00000606749 COA7Q96BR5 231 aa9.28□□□□□ -0.92
CUX1-219ENST00000606749 SHISA4Q96DD7 197 aa9.28□□□□□ -0.92
CUX1-219ENST00000606749 KIF1BPQ96EK5 621 aa9.28□□□□□ -0.92
CUX1-219ENST00000606749 TRIM34Q9BYJ4 488 aa9.28□□□□□ -0.92
CUX1-219ENST00000606749 DDX19BQ9UMR2 479 aa9.28□□□□□ -0.92
CUX1-219ENST00000606749 USP17L10C9JJH3 530 aa9.27□□□□□ -0.93
CUX1-219ENST00000606749 APBB1O00213 710 aa9.27□□□□□ -0.93
CUX1-219ENST00000606749 HMMRO75330 724 aa9.27□□□□□ -0.93
CUX1-219ENST00000606749 GDF11O95390 407 aa9.27□□□□□ -0.93
CUX1-219ENST00000606749 ELNP15502 786 aa9.27□□□□□ -0.93
CUX1-219ENST00000606749 TTF1Q15361 905 aaPredicted RBP9.27□□□□□ -0.93
CUX1-219ENST00000606749 TATDN1Q6P1N9 297 aa9.27□□□□□ -0.93
CUX1-219ENST00000606749 UBE2Q1Q7Z7E8 422 aa9.27□□□□□ -0.93
CUX1-219ENST00000606749 P2RX7Q99572 595 aaKnown RBP9.27□□□□□ -0.93
CUX1-219ENST00000606749 UNC93B1Q9H1C4 597 aa9.27□□□□□ -0.93
CUX1-219ENST00000606749 TMOD4Q9NZQ9 345 aa9.27□□□□□ -0.93
CUX1-219ENST00000606749 RCAN3Q9UKA8 241 aa9.27□□□□□ -0.93
CUX1-219ENST00000606749 GJD2Q9UKL4 321 aa9.27□□□□□ -0.93
CUX1-219ENST00000606749 MGAMO43451 1857 aa9.27□□□□□ -0.93
CUX1-219ENST00000606749 MAGEB6P1A0A0J9YX57 407 aa9.26□□□□□ -0.93
CUX1-219ENST00000606749 RAB11FIP3O75154 756 aa9.26□□□□□ -0.93
CUX1-219ENST00000606749 SGPL1O95470 568 aa9.26□□□□□ -0.93
CUX1-219ENST00000606749 GH2P01242 217 aa9.26□□□□□ -0.93
CUX1-219ENST00000606749 INHAP05111 366 aa9.26□□□□□ -0.93
CUX1-219ENST00000606749 IFIT2P09913 472 aaKnown RBP9.26□□□□□ -0.93
CUX1-219ENST00000606749 IRX3P78415 501 aaPredicted RBP9.26□□□□□ -0.93
CUX1-219ENST00000606749 HABP4Q5JVS0 413 aaKnown RBP9.26□□□□□ -0.93
CUX1-219ENST00000606749 SLC9C2Q5TAH2 1124 aa9.26□□□□□ -0.93
CUX1-219ENST00000606749 TTC6Q86TZ1 520 aa9.26□□□□□ -0.93
CUX1-219ENST00000606749 U2AF1L4Q8WU68 220 aaKnown RBP9.26□□□□□ -0.93
CUX1-219ENST00000606749 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.26□□□□□ -0.93
CUX1-219ENST00000606749 RIOK1Q9BRS2 568 aaKnown RBP9.26□□□□□ -0.93
CUX1-219ENST00000606749 EHD4Q9H223 541 aa9.26□□□□□ -0.93
CUX1-219ENST00000606749 EMILIN3Q9NT22 766 aa9.26□□□□□ -0.93
CUX1-219ENST00000606749 MORF4L1Q9UBU8 362 aa9.26□□□□□ -0.93
CUX1-219ENST00000606749 SERPINB13Q9UIV8 391 aa9.26□□□□□ -0.93
CUX1-219ENST00000606749 ZBTB21Q9ULJ3 1066 aa9.26□□□□□ -0.93
CUX1-219ENST00000606749 SIPA1L1O43166 1804 aa9.26□□□□□ -0.93
CUX1-219ENST00000606749 DOCK3Q8IZD9 2030 aa9.26□□□□□ -0.93
CUX1-219ENST00000606749 CDK5RAP2Q96SN8 1893 aa9.25□□□□□ -0.93
CUX1-219ENST00000606749 H0YGN5 161 aa9.25□□□□□ -0.93
CUX1-219ENST00000606749 PEX10O60683 326 aa9.25□□□□□ -0.93
CUX1-219ENST00000606749 PDE6AP16499 860 aa9.25□□□□□ -0.93
CUX1-219ENST00000606749 PLCD1P51178 756 aa9.25□□□□□ -0.93
CUX1-219ENST00000606749 HERVK_113P62684 666 aa9.25□□□□□ -0.93
CUX1-219ENST00000606749 Q3C1V9 767 aa9.25□□□□□ -0.93
CUX1-219ENST00000606749 CERKLQ49MI3 558 aaPredicted RBP9.25□□□□□ -0.93
CUX1-219ENST00000606749 USP17L2Q6R6M4 530 aa9.25□□□□□ -0.93
CUX1-219ENST00000606749 POTEEQ6S8J3 1075 aa9.25□□□□□ -0.93
CUX1-219ENST00000606749 GPRC5AQ8NFJ5 357 aa9.25□□□□□ -0.93
CUX1-219ENST00000606749 DPF3Q92784 378 aa9.25□□□□□ -0.93
CUX1-219ENST00000606749 BCL11AQ9H165 835 aa9.25□□□□□ -0.93
CUX1-219ENST00000606749 CHMP4BQ9H444 224 aaKnown RBP9.25□□□□□ -0.93
CUX1-219ENST00000606749 TXNRD2Q9NNW7 524 aa9.25□□□□□ -0.93
CUX1-219ENST00000606749 RBPJLQ9UBG7 517 aa9.25□□□□□ -0.93
CUX1-219ENST00000606749 TAOK2Q9UL54 1235 aa9.25□□□□□ -0.93
CUX1-219ENST00000606749 ATAD5Q96QE3 1844 aa9.25□□□□□ -0.93
CUX1-219ENST00000606749 ZNF532Q9HCE3 1301 aa9.25□□□□□ -0.93
CUX1-219ENST00000606749 MAST2Q6P0Q8 1798 aa9.24□□□□□ -0.93
CUX1-219ENST00000606749 FOCADQ5VW36 1801 aa9.24□□□□□ -0.93
CUX1-219ENST00000606749 TCRBV5S4A2TA0A5A2 114 aa9.24□□□□□ -0.93
CUX1-219ENST00000606749 GOLIM4O00461 696 aa9.24□□□□□ -0.93
CUX1-219ENST00000606749 TFRCP02786 760 aaKnown RBP9.24□□□□□ -0.93
CUX1-219ENST00000606749 POLR3DP05423 398 aaPredicted RBP9.24□□□□□ -0.93
CUX1-219ENST00000606749 CAPN2P17655 700 aa9.24□□□□□ -0.93
CUX1-219ENST00000606749 SHMT1P34896 483 aa9.24□□□□□ -0.93
CUX1-219ENST00000606749 GABPAQ06546 454 aa9.24□□□□□ -0.93
CUX1-219ENST00000606749 PDE3AQ14432 1141 aa9.24□□□□□ -0.93
CUX1-219ENST00000606749 ABCB5Q2M3G0 1257 aa9.24□□□□□ -0.93
CUX1-219ENST00000606749 C20orf194Q5TEA3 1177 aa9.24□□□□□ -0.93
CUX1-219ENST00000606749 EDC3Q96F86 508 aaKnown RBP9.24□□□□□ -0.93
CUX1-219ENST00000606749 DEFB118Q96PH6 123 aa9.24□□□□□ -0.93
CUX1-219ENST00000606749 DNAJC2Q99543 621 aaKnown RBP9.24□□□□□ -0.93
CUX1-219ENST00000606749 CRNKL1Q9BZJ0 848 aaKnown RBP9.24□□□□□ -0.93
CUX1-219ENST00000606749 BOLA2Q9H3K6 86 aa9.24□□□□□ -0.93
CUX1-219ENST00000606749 PAK6Q9NQU5 681 aaPredicted RBP9.24□□□□□ -0.93
CUX1-219ENST00000606749 PCDH10Q9P2E7 1040 aa9.24□□□□□ -0.93
CUX1-219ENST00000606749 COLQQ9Y215 455 aaPredicted RBP9.24□□□□□ -0.93
CUX1-219ENST00000606749 LOC285556D6RIA3 1793 aa9.24□□□□□ -0.93
CUX1-219ENST00000606749 FARP2O94887 1054 aaPredicted RBP9.23□□□□□ -0.93
CUX1-219ENST00000606749 ATP5JP18859 108 aa9.23□□□□□ -0.93
CUX1-219ENST00000606749 GUCY1A2P33402 732 aa9.23□□□□□ -0.93
CUX1-219ENST00000606749 RAB3GAP1Q15042 981 aa9.23□□□□□ -0.93
CUX1-219ENST00000606749 SLFNL1Q499Z3 407 aa9.23□□□□□ -0.93
CUX1-219ENST00000606749 ACER1Q8TDN7 264 aa9.23□□□□□ -0.93
CUX1-219ENST00000606749 C12orf42Q96LP6 360 aa9.23□□□□□ -0.93
CUX1-219ENST00000606749 NUDT12Q9BQG2 462 aa9.23□□□□□ -0.93
CUX1-219ENST00000606749 HTATIP2Q9BUP3 242 aa9.23□□□□□ -0.93
CUX1-219ENST00000606749 KIAA1683Q9H0B3 1180 aa9.23□□□□□ -0.93
CUX1-219ENST00000606749 CRISPLD2Q9H0B8 497 aa9.23□□□□□ -0.93
CUX1-219ENST00000606749 CABP5Q9NP86 173 aa9.23□□□□□ -0.93
CUX1-219ENST00000606749 DCP1AQ9NPI6 582 aaPredicted RBP9.23□□□□□ -0.93
CUX1-219ENST00000606749 MCM9Q9NXL9 1143 aa9.23□□□□□ -0.93
CUX1-219ENST00000606749 MYH1P12882 1939 aa9.23□□□□□ -0.93
CUX1-219ENST00000606749 USP17L15C9J2P7 530 aa9.22□□□□□ -0.93
CUX1-219ENST00000606749 USP17L13C9JLJ4 530 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms