RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 HMGCRP04035 888 aa21.75■■□□□ 1.07
SHKBP1-227ENST00000602011 MAPKAPK5Q8IW41 473 aa21.75■■□□□ 1.07
SHKBP1-227ENST00000602011 TRMT44Q8IYL2 757 aaKnown RBP21.75■■□□□ 1.07
SHKBP1-227ENST00000602011 PAWRQ96IZ0 340 aaKnown RBP21.75■■□□□ 1.07
SHKBP1-227ENST00000602011 STAP2Q9UGK3 403 aa21.75■■□□□ 1.07
SHKBP1-227ENST00000602011 GJD2Q9UKL4 321 aa21.75■■□□□ 1.07
SHKBP1-227ENST00000602011 A0A1W2PPC1 479 aa21.74■■□□□ 1.07
SHKBP1-227ENST00000602011 XRCC5P13010 732 aaKnown RBP21.74■■□□□ 1.07
SHKBP1-227ENST00000602011 ZAP70P43403 619 aa21.74■■□□□ 1.07
SHKBP1-227ENST00000602011 HSP90AB4PQ58FF6 505 aa21.74■■□□□ 1.07
SHKBP1-227ENST00000602011 GPRC5AQ8NFJ5 357 aa21.74■■□□□ 1.07
SHKBP1-227ENST00000602011 ALPK3Q96L96 1907 aa21.74■■□□□ 1.07
SHKBP1-227ENST00000602011 RPTORQ8N122 1335 aa21.74■■□□□ 1.07
SHKBP1-227ENST00000602011 MS4A1P11836 297 aa21.73■■□□□ 1.07
SHKBP1-227ENST00000602011 CYP7A1P22680 504 aa21.73■■□□□ 1.07
SHKBP1-227ENST00000602011 MAP3K12Q12852 859 aa21.73■■□□□ 1.07
SHKBP1-227ENST00000602011 TRIM32Q13049 653 aa21.73■■□□□ 1.07
SHKBP1-227ENST00000602011 MTMR2Q13614 643 aa21.73■■□□□ 1.07
SHKBP1-227ENST00000602011 NECAB2Q7Z6G3 386 aa21.73■■□□□ 1.07
SHKBP1-227ENST00000602011 ITPRIPQ8IWB1 547 aa21.73■■□□□ 1.07
SHKBP1-227ENST00000602011 SOCS4Q8WXH5 440 aa21.73■■□□□ 1.07
SHKBP1-227ENST00000602011 LRCH3Q96II8 777 aa21.73■■□□□ 1.07
SHKBP1-227ENST00000602011 HMX1Q9NP08 348 aaPredicted RBP21.73■■□□□ 1.07
SHKBP1-227ENST00000602011 DBNLQ9UJU6 430 aaKnown RBP21.73■■□□□ 1.07
SHKBP1-227ENST00000602011 PALD1Q9ULE6 856 aa21.73■■□□□ 1.07
SHKBP1-227ENST00000602011 LAMA3Q16787 3333 aa21.72■■□□□ 1.07
SHKBP1-227ENST00000602011 PEX10O60683 326 aa21.72■■□□□ 1.07
SHKBP1-227ENST00000602011 MAPK4P31152 587 aa21.72■■□□□ 1.07
SHKBP1-227ENST00000602011 TTC6Q86TZ1 520 aa21.72■■□□□ 1.07
SHKBP1-227ENST00000602011 NUDT12Q9BQG2 462 aa21.72■■□□□ 1.07
SHKBP1-227ENST00000602011 XRN2Q9H0D6 950 aaKnown RBP eCLIP21.72■■□□□ 1.07
SHKBP1-227ENST00000602011 HERVK_113P62684 666 aa21.71■■□□□ 1.07
SHKBP1-227ENST00000602011 USP17L2Q6R6M4 530 aa21.71■■□□□ 1.07
SHKBP1-227ENST00000602011 ADGRA1Q86SQ6 560 aa21.71■■□□□ 1.07
SHKBP1-227ENST00000602011 CCAR1Q8IX12 1150 aaKnown RBP21.71■■□□□ 1.07
SHKBP1-227ENST00000602011 EAF2Q96CJ1 260 aaPredicted RBP21.71■■□□□ 1.07
SHKBP1-227ENST00000602011 P2RX7Q99572 595 aaKnown RBP21.71■■□□□ 1.07
SHKBP1-227ENST00000602011 EHD4Q9H223 541 aa21.71■■□□□ 1.07
SHKBP1-227ENST00000602011 ZBTB21Q9ULJ3 1066 aa21.71■■□□□ 1.07
SHKBP1-227ENST00000602011 IDH1O75874 414 aaKnown RBP21.7■■□□□ 1.06
SHKBP1-227ENST00000602011 USP5P45974 858 aa21.7■■□□□ 1.06
SHKBP1-227ENST00000602011 USP14P54578 494 aa21.7■■□□□ 1.06
SHKBP1-227ENST00000602011 TTF1Q15361 905 aaPredicted RBP21.7■■□□□ 1.06
SHKBP1-227ENST00000602011 TATDN1Q6P1N9 297 aa21.7■■□□□ 1.06
SHKBP1-227ENST00000602011 CCDC8Q9H0W5 538 aaPredicted RBP21.7■■□□□ 1.06
SHKBP1-227ENST00000602011 DNAJC18Q9H819 358 aa21.7■■□□□ 1.06
SHKBP1-227ENST00000602011 PIH1D3Q9NQM4 214 aaKnown RBP21.7■■□□□ 1.06
SHKBP1-227ENST00000602011 LOC285556D6RIA3 1793 aa21.69■■□□□ 1.06
SHKBP1-227ENST00000602011 ATAD5Q96QE3 1844 aa21.69■■□□□ 1.06
SHKBP1-227ENST00000602011 HNRNPUQ00839 825 aaKnown RBP eCLIP21.69■■□□□ 1.06
SHKBP1-227ENST00000602011 PDE3AQ14432 1141 aa21.69■■□□□ 1.06
SHKBP1-227ENST00000602011 C7orf61Q8IZ16 206 aa21.69■■□□□ 1.06
SHKBP1-227ENST00000602011 SERPINB13Q9UIV8 391 aa21.69■■□□□ 1.06
SHKBP1-227ENST00000602011 ZMYND8Q9ULU4 1186 aaPredicted RBP21.69■■□□□ 1.06
SHKBP1-227ENST00000602011 GLRX3O76003 335 aaKnown RBP21.68■■□□□ 1.06
SHKBP1-227ENST00000602011 SHROOM1Q2M3G4 852 aaPredicted RBP21.68■■□□□ 1.06
SHKBP1-227ENST00000602011 CEP85Q6P2H3 762 aa21.68■■□□□ 1.06
SHKBP1-227ENST00000602011 C12orf42Q96LP6 360 aa21.68■■□□□ 1.06
SHKBP1-227ENST00000602011 NBPF3Q9H094 633 aa21.68■■□□□ 1.06
SHKBP1-227ENST00000602011 CCNA1P78396 465 aa21.67■■□□□ 1.06
SHKBP1-227ENST00000602011 JAG1P78504 1218 aa21.67■■□□□ 1.06
SHKBP1-227ENST00000602011 MAGEB6Q8N7X4 407 aa21.67■■□□□ 1.06
SHKBP1-227ENST00000602011 C1orf115Q9H7X2 142 aa21.67■■□□□ 1.06
SHKBP1-227ENST00000602011 CABP5Q9NP86 173 aa21.67■■□□□ 1.06
SHKBP1-227ENST00000602011 RBPJLQ9UBG7 517 aa21.67■■□□□ 1.06
SHKBP1-227ENST00000602011 COL6A3P12111 3177 aa21.67■■□□□ 1.06
SHKBP1-227ENST00000602011 USP17L15C9J2P7 530 aa21.66■■□□□ 1.06
SHKBP1-227ENST00000602011 USP17L13C9JLJ4 530 aa21.66■■□□□ 1.06
SHKBP1-227ENST00000602011 USP17L11C9JVI0 530 aa21.66■■□□□ 1.06
SHKBP1-227ENST00000602011 USP17L18D6R9N7 530 aa21.66■■□□□ 1.06
SHKBP1-227ENST00000602011 USP17L22D6RA61 530 aa21.66■■□□□ 1.06
SHKBP1-227ENST00000602011 USP17L17D6RBQ6 530 aa21.66■■□□□ 1.06
SHKBP1-227ENST00000602011 USP17L19D6RCP7 530 aa21.66■■□□□ 1.06
SHKBP1-227ENST00000602011 USP17L20D6RJB6 530 aa21.66■■□□□ 1.06
SHKBP1-227ENST00000602011 GDF11O95390 407 aa21.66■■□□□ 1.06
SHKBP1-227ENST00000602011 ERVK-9P63128 1117 aa21.66■■□□□ 1.06
SHKBP1-227ENST00000602011 ERVK-24P63145 666 aa21.66■■□□□ 1.06
SHKBP1-227ENST00000602011 DYNLL1P63167 89 aaKnown RBP21.66■■□□□ 1.06
SHKBP1-227ENST00000602011 USP17L24Q0WX57 530 aa21.66■■□□□ 1.06
SHKBP1-227ENST00000602011 MAP3K21Q5TCX8 1036 aa21.66■■□□□ 1.06
SHKBP1-227ENST00000602011 CHMP4BQ9H444 224 aaKnown RBP21.66■■□□□ 1.06
SHKBP1-227ENST00000602011 EMILIN3Q9NT22 766 aa21.66■■□□□ 1.06
SHKBP1-227ENST00000602011 SAP30BPQ9UHR5 308 aaKnown RBP21.66■■□□□ 1.06
SHKBP1-227ENST00000602011 RABGAP1Q9Y3P9 1069 aa21.66■■□□□ 1.06
SHKBP1-227ENST00000602011 PLXNB2O15031 1838 aa21.65■■□□□ 1.06
SHKBP1-227ENST00000602011 SIPA1L1O43166 1804 aa21.65■■□□□ 1.06
SHKBP1-227ENST00000602011 GH2P01242 217 aa21.65■■□□□ 1.06
SHKBP1-227ENST00000602011 SYN1P17600 705 aa21.65■■□□□ 1.06
SHKBP1-227ENST00000602011 RGS2P41220 211 aa21.65■■□□□ 1.06
SHKBP1-227ENST00000602011 MNX1P50219 401 aaPredicted RBP21.65■■□□□ 1.06
SHKBP1-227ENST00000602011 CERKLQ49MI3 558 aaPredicted RBP21.65■■□□□ 1.06
SHKBP1-227ENST00000602011 SLC17A8Q8NDX2 589 aa21.65■■□□□ 1.06
SHKBP1-227ENST00000602011 KIAA1683Q9H0B3 1180 aa21.65■■□□□ 1.06
SHKBP1-227ENST00000602011 OGDHLQ9ULD0 1010 aa21.65■■□□□ 1.06
SHKBP1-227ENST00000602011 RLBP1P12271 317 aa21.64■■□□□ 1.05
SHKBP1-227ENST00000602011 CYP2B6P20813 491 aa21.64■■□□□ 1.05
SHKBP1-227ENST00000602011 PLEKHH3Q7Z736 793 aa21.64■■□□□ 1.05
SHKBP1-227ENST00000602011 AACSQ86V21 672 aa21.64■■□□□ 1.05
SHKBP1-227ENST00000602011 RPAP2Q8IXW5 612 aaPredicted RBP21.64■■□□□ 1.05
SHKBP1-227ENST00000602011 CLASRPQ8N2M8 674 aaKnown RBP21.64■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 353.6 ms