RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 SREBF2Q12772 1141 aa23.4■■□□□ 1.34
SHKBP1-221ENST00000599833 IFNL3Q8IZI9 196 aa23.4■■□□□ 1.34
SHKBP1-221ENST00000599833 CRACR2BQ8N4Y2 399 aaPredicted RBP23.4■■□□□ 1.34
SHKBP1-221ENST00000599833 CCDC136Q96JN2 1154 aa23.4■■□□□ 1.34
SHKBP1-221ENST00000599833 CFHR5Q9BXR6 569 aa23.4■■□□□ 1.34
SHKBP1-221ENST00000599833 NEFLP07196 543 aa23.39■■□□□ 1.33
SHKBP1-221ENST00000599833 GUCY1A2P33402 732 aa23.39■■□□□ 1.33
SHKBP1-221ENST00000599833 GTF2A2P52657 109 aa23.39■■□□□ 1.33
SHKBP1-221ENST00000599833 INHBEP58166 350 aa23.39■■□□□ 1.33
SHKBP1-221ENST00000599833 MCMDC2Q4G0Z9 681 aa23.39■■□□□ 1.33
SHKBP1-221ENST00000599833 ERICH6BQ5W0A0 696 aa23.39■■□□□ 1.33
SHKBP1-221ENST00000599833 R3HDMLQ9H3Y0 253 aa23.39■■□□□ 1.33
SHKBP1-221ENST00000599833 TSKSQ9UJT2 592 aa23.39■■□□□ 1.33
SHKBP1-221ENST00000599833 ZBTB21Q9ULJ3 1066 aa23.39■■□□□ 1.33
SHKBP1-221ENST00000599833 ZHX2Q9Y6X8 837 aa23.39■■□□□ 1.33
SHKBP1-221ENST00000599833 CA12O43570 354 aa23.38■■□□□ 1.33
SHKBP1-221ENST00000599833 C16orf86Q6ZW13 317 aa23.38■■□□□ 1.33
SHKBP1-221ENST00000599833 FAM43AQ8N2R8 423 aa23.38■■□□□ 1.33
SHKBP1-221ENST00000599833 PICK1Q9NRD5 415 aa23.38■■□□□ 1.33
SHKBP1-221ENST00000599833 ARPP21Q9UBL0 812 aaPredicted RBP23.38■■□□□ 1.33
SHKBP1-221ENST00000599833 TAOK2Q9UL54 1235 aa23.38■■□□□ 1.33
SHKBP1-221ENST00000599833 CCL15-CCL14A0A0B4J2E2 113 aa23.37■■□□□ 1.33
SHKBP1-221ENST00000599833 A0A0G2JLL6 359 aaPredicted RBP23.37■■□□□ 1.33
SHKBP1-221ENST00000599833 CXCL11O14625 94 aa23.37■■□□□ 1.33
SHKBP1-221ENST00000599833 TRPA1O75762 1119 aa23.37■■□□□ 1.33
SHKBP1-221ENST00000599833 SNAPC2Q13487 334 aa23.37■■□□□ 1.33
SHKBP1-221ENST00000599833 CCL15Q16663 113 aa23.37■■□□□ 1.33
SHKBP1-221ENST00000599833 PRRT2Q7Z6L0 340 aaPredicted RBP23.37■■□□□ 1.33
SHKBP1-221ENST00000599833 GPAT2Q6NUI2 795 aa23.36■■□□□ 1.33
SHKBP1-221ENST00000599833 GINM1Q9NU53 330 aa23.36■■□□□ 1.33
SHKBP1-221ENST00000599833 CASP8AP2Q9UKL3 1982 aa23.36■■□□□ 1.33
SHKBP1-221ENST00000599833 BTBD19C9JJ37 291 aa23.35■■□□□ 1.33
SHKBP1-221ENST00000599833 GH2P01242 217 aa23.35■■□□□ 1.33
SHKBP1-221ENST00000599833 ASNSP08243 561 aa23.35■■□□□ 1.33
SHKBP1-221ENST00000599833 CDK8P49336 464 aa23.35■■□□□ 1.33
SHKBP1-221ENST00000599833 CTCFP49711 727 aaPredicted RBP23.35■■□□□ 1.33
SHKBP1-221ENST00000599833 WDR18Q9BV38 432 aa23.35■■□□□ 1.33
SHKBP1-221ENST00000599833 SWAP70Q9UH65 585 aa23.35■■□□□ 1.33
SHKBP1-221ENST00000599833 TACC3Q9Y6A5 838 aa23.35■■□□□ 1.33
SHKBP1-221ENST00000599833 CCDC171Q6TFL3 1326 aa23.34■■□□□ 1.33
SHKBP1-221ENST00000599833 LAMA4Q16363 1823 aa23.34■■□□□ 1.33
SHKBP1-221ENST00000599833 USP17L5A8MUK1 530 aa23.34■■□□□ 1.33
SHKBP1-221ENST00000599833 CETPP11597 493 aa23.34■■□□□ 1.33
SHKBP1-221ENST00000599833 LBX1P52954 281 aa23.34■■□□□ 1.33
SHKBP1-221ENST00000599833 DGKZQ13574 1117 aa23.34■■□□□ 1.33
SHKBP1-221ENST00000599833 ALX1Q15699 326 aa23.34■■□□□ 1.33
SHKBP1-221ENST00000599833 CERKLQ49MI3 558 aaPredicted RBP23.34■■□□□ 1.33
SHKBP1-221ENST00000599833 HSPD1P10809 573 aaKnown RBP23.33■■□□□ 1.33
SHKBP1-221ENST00000599833 ZNF280CQ8ND82 737 aa23.33■■□□□ 1.33
SHKBP1-221ENST00000599833 BEGAINQ9BUH8 593 aa23.33■■□□□ 1.33
SHKBP1-221ENST00000599833 TRIM34Q9BYJ4 488 aa23.33■■□□□ 1.33
SHKBP1-221ENST00000599833 TBC1D2Q9BYX2 928 aa23.33■■□□□ 1.33
SHKBP1-221ENST00000599833 PPP4R2Q9NY27 417 aa23.33■■□□□ 1.33
SHKBP1-221ENST00000599833 ZMYM6O95789 1325 aa23.33■■□□□ 1.32
SHKBP1-221ENST00000599833 TRIM75PA6NK02 468 aa23.32■■□□□ 1.32
SHKBP1-221ENST00000599833 TBC1D8O95759 1140 aa23.32■■□□□ 1.32
SHKBP1-221ENST00000599833 AKR1B1P15121 316 aa23.32■■□□□ 1.32
SHKBP1-221ENST00000599833 CHMLP26374 656 aa23.32■■□□□ 1.32
SHKBP1-221ENST00000599833 TDO2P48775 406 aa23.32■■□□□ 1.32
SHKBP1-221ENST00000599833 SPP2Q13103 211 aa23.32■■□□□ 1.32
SHKBP1-221ENST00000599833 ABCB5Q2M3G0 1257 aa23.32■■□□□ 1.32
SHKBP1-221ENST00000599833 SH3D19Q5HYK7 790 aa23.32■■□□□ 1.32
SHKBP1-221ENST00000599833 CWC27Q6UX04 472 aaKnown RBP23.32■■□□□ 1.32
SHKBP1-221ENST00000599833 SIAH1Q8IUQ4 282 aa23.32■■□□□ 1.32
SHKBP1-221ENST00000599833 DDRGK1Q96HY6 314 aa23.32■■□□□ 1.32
SHKBP1-221ENST00000599833 GNL3Q9BVP2 549 aaKnown RBP eCLIP23.32■■□□□ 1.32
SHKBP1-221ENST00000599833 HIP1O00291 1037 aa23.31■■□□□ 1.32
SHKBP1-221ENST00000599833 RASA1P20936 1047 aa23.31■■□□□ 1.32
SHKBP1-221ENST00000599833 ANKRD23Q86SG2 305 aa23.31■■□□□ 1.32
SHKBP1-221ENST00000599833 ZCCHC17Q9NP64 241 aaKnown RBP23.31■■□□□ 1.32
SHKBP1-221ENST00000599833 PRDM10Q9NQV6 1147 aa23.31■■□□□ 1.32
SHKBP1-221ENST00000599833 ADGRA2Q96PE1 1338 aa23.31■■□□□ 1.32
SHKBP1-221ENST00000599833 CENPFP49454 3210 aa23.31■■□□□ 1.32
SHKBP1-221ENST00000599833 MINDY4BA8MYZ0 360 aa23.3■■□□□ 1.32
SHKBP1-221ENST00000599833 ALDH1A1P00352 501 aa23.3■■□□□ 1.32
SHKBP1-221ENST00000599833 FGAP02671 866 aa23.3■■□□□ 1.32
SHKBP1-221ENST00000599833 APPP05067 770 aa23.3■■□□□ 1.32
SHKBP1-221ENST00000599833 PPARAQ07869 468 aa23.3■■□□□ 1.32
SHKBP1-221ENST00000599833 SEPT2Q15019 361 aa23.3■■□□□ 1.32
SHKBP1-221ENST00000599833 NAPBQ9H115 298 aa23.3■■□□□ 1.32
SHKBP1-221ENST00000599833 DIAPH3Q9NSV4 1193 aa23.3■■□□□ 1.32
SHKBP1-221ENST00000599833 ANAPC4Q9UJX5 808 aa23.3■■□□□ 1.32
SHKBP1-221ENST00000599833 DDX52Q9Y2R4 599 aaKnown RBP eCLIP23.3■■□□□ 1.32
SHKBP1-221ENST00000599833 CRHR2Q13324 411 aa23.29■■□□□ 1.32
SHKBP1-221ENST00000599833 NOM1Q5C9Z4 860 aaKnown RBP23.29■■□□□ 1.32
SHKBP1-221ENST00000599833 BMP2KLQ5H9B9 411 aa23.29■■□□□ 1.32
SHKBP1-221ENST00000599833 ACER1Q8TDN7 264 aa23.29■■□□□ 1.32
SHKBP1-221ENST00000599833 NACAP1Q9BZK3 213 aa23.29■■□□□ 1.32
SHKBP1-221ENST00000599833 NBPF3Q9H094 633 aa23.29■■□□□ 1.32
SHKBP1-221ENST00000599833 A0A1W2PRG0 241 aa23.28■■□□□ 1.32
SHKBP1-221ENST00000599833 BACE1P56817 501 aa23.28■■□□□ 1.32
SHKBP1-221ENST00000599833 TREML2Q5T2D2 321 aa23.28■■□□□ 1.32
SHKBP1-221ENST00000599833 CLEC10AQ8IUN9 316 aa23.28■■□□□ 1.32
SHKBP1-221ENST00000599833 IGKV6D-41A0A0C4DH26 115 aa23.27■■□□□ 1.32
SHKBP1-221ENST00000599833 FGRP09769 529 aa23.27■■□□□ 1.32
SHKBP1-221ENST00000599833 HMGCS2P54868 508 aa23.27■■□□□ 1.32
SHKBP1-221ENST00000599833 CAP1Q01518 475 aa23.27■■□□□ 1.32
SHKBP1-221ENST00000599833 MTMR2Q13614 643 aa23.27■■□□□ 1.32
SHKBP1-221ENST00000599833 COL13A1Q5TAT6 717 aaPredicted RBP23.27■■□□□ 1.32
SHKBP1-221ENST00000599833 TMEM179Q6ZVK1 233 aa23.27■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms