RNA–Protein interactions for RNA: ENST00000598553.1

VRK3-214, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 595 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-214ENST00000598553 MYPNQ86TC9 1320 aa12.96□□□□□ -0.33
VRK3-214ENST00000598553 CYP2D7A0A087X1C5 515 aa12.96□□□□□ -0.33
VRK3-214ENST00000598553 MAGEB6P1A0A0J9YX57 407 aa12.96□□□□□ -0.33
VRK3-214ENST00000598553 USP17L5A8MUK1 530 aa12.96□□□□□ -0.33
VRK3-214ENST00000598553 RAB11FIP3O75154 756 aa12.96□□□□□ -0.33
VRK3-214ENST00000598553 GUCY1A2P33402 732 aa12.96□□□□□ -0.33
VRK3-214ENST00000598553 SHMT1P34896 483 aa12.96□□□□□ -0.33
VRK3-214ENST00000598553 USP5P45974 858 aa12.96□□□□□ -0.33
VRK3-214ENST00000598553 MAP3K12Q12852 859 aa12.96□□□□□ -0.33
VRK3-214ENST00000598553 SLC9C1Q4G0N8 1177 aa12.96□□□□□ -0.33
VRK3-214ENST00000598553 SH3D19Q5HYK7 790 aa12.96□□□□□ -0.33
VRK3-214ENST00000598553 SLC9C2Q5TAH2 1124 aa12.96□□□□□ -0.33
VRK3-214ENST00000598553 FASTKD5Q7L8L6 764 aaKnown RBP12.96□□□□□ -0.33
VRK3-214ENST00000598553 CLEC10AQ8IUN9 316 aa12.96□□□□□ -0.33
VRK3-214ENST00000598553 CRACR2BQ8N4Y2 399 aaPredicted RBP12.96□□□□□ -0.33
VRK3-214ENST00000598553 SHISA4Q96DD7 197 aa12.96□□□□□ -0.33
VRK3-214ENST00000598553 YTHDC1Q96MU7 727 aaKnown RBP12.96□□□□□ -0.33
VRK3-214ENST00000598553 DHX36Q9H2U1 1008 aaKnown RBP12.96□□□□□ -0.33
VRK3-214ENST00000598553 COL11A1P12107 1806 aaPredicted RBP12.95□□□□□ -0.34
VRK3-214ENST00000598553 GH2P01242 217 aa12.95□□□□□ -0.34
VRK3-214ENST00000598553 ATP5JP18859 108 aa12.95□□□□□ -0.34
VRK3-214ENST00000598553 ADD2P35612 726 aa12.95□□□□□ -0.34
VRK3-214ENST00000598553 GABPAQ06546 454 aa12.95□□□□□ -0.34
VRK3-214ENST00000598553 CRBNQ96SW2 442 aa12.95□□□□□ -0.34
VRK3-214ENST00000598553 HAUS7Q99871 368 aa12.95□□□□□ -0.34
VRK3-214ENST00000598553 ASCC2Q9H1I8 757 aaPredicted RBP12.95□□□□□ -0.34
VRK3-214ENST00000598553 EMILIN3Q9NT22 766 aa12.95□□□□□ -0.34
VRK3-214ENST00000598553 PAG1Q9NWQ8 432 aa12.95□□□□□ -0.34
VRK3-214ENST00000598553 SLC45A1Q9Y2W3 748 aa12.95□□□□□ -0.34
VRK3-214ENST00000598553 A0A0G2JMZ2 1700 aa12.95□□□□□ -0.34
VRK3-214ENST00000598553 FRMPD3Q5JV73 1810 aa12.95□□□□□ -0.34
VRK3-214ENST00000598553 MBD4O95243 580 aa12.94□□□□□ -0.34
VRK3-214ENST00000598553 FMNL1O95466 1100 aaPredicted RBP12.94□□□□□ -0.34
VRK3-214ENST00000598553 RRP1P56182 461 aaKnown RBP12.94□□□□□ -0.34
VRK3-214ENST00000598553 ZYXQ15942 572 aaKnown RBP12.94□□□□□ -0.34
VRK3-214ENST00000598553 TATDN1Q6P1N9 297 aa12.94□□□□□ -0.34
VRK3-214ENST00000598553 FOXP4Q8IVH2 680 aaPredicted RBP12.94□□□□□ -0.34
VRK3-214ENST00000598553 ACER1Q8TDN7 264 aa12.94□□□□□ -0.34
VRK3-214ENST00000598553 DYNLL2Q96FJ2 89 aa12.94□□□□□ -0.34
VRK3-214ENST00000598553 WDR18Q9BV38 432 aa12.94□□□□□ -0.34
VRK3-214ENST00000598553 LRRCC1Q9C099 1032 aa12.94□□□□□ -0.34
VRK3-214ENST00000598553 DCTPP1Q9H773 170 aa12.94□□□□□ -0.34
VRK3-214ENST00000598553 TXNRD2Q9NNW7 524 aa12.94□□□□□ -0.34
VRK3-214ENST00000598553 DCP1AQ9NPI6 582 aaPredicted RBP12.94□□□□□ -0.34
VRK3-214ENST00000598553 IGSF3O75054 1194 aa12.93□□□□□ -0.34
VRK3-214ENST00000598553 HLA-DOAP06340 250 aa12.93□□□□□ -0.34
VRK3-214ENST00000598553 ASNSP08243 561 aa12.93□□□□□ -0.34
VRK3-214ENST00000598553 ELNP15502 786 aa12.93□□□□□ -0.34
VRK3-214ENST00000598553 BACE1P56817 501 aa12.93□□□□□ -0.34
VRK3-214ENST00000598553 KIF22Q14807 665 aa12.93□□□□□ -0.34
VRK3-214ENST00000598553 PROCA1Q8NCQ7 364 aaPredicted RBP12.93□□□□□ -0.34
VRK3-214ENST00000598553 SMCR8Q8TEV9 937 aaPredicted RBP12.93□□□□□ -0.34
VRK3-214ENST00000598553 PUS7LQ9H0K6 701 aaKnown RBP12.93□□□□□ -0.34
VRK3-214ENST00000598553 EHD4Q9H223 541 aa12.93□□□□□ -0.34
VRK3-214ENST00000598553 SERPINB13Q9UIV8 391 aa12.93□□□□□ -0.34
VRK3-214ENST00000598553 MKI67P46013 3256 aaKnown RBP12.93□□□□□ -0.34
VRK3-214ENST00000598553 FLT3LGP49771 235 aa12.92□□□□□ -0.34
VRK3-214ENST00000598553 FCGRTP55899 365 aa12.92□□□□□ -0.34
VRK3-214ENST00000598553 TTF1Q15361 905 aaPredicted RBP12.92□□□□□ -0.34
VRK3-214ENST00000598553 KIAA1755Q5JYT7 1200 aa12.92□□□□□ -0.34
VRK3-214ENST00000598553 P2RX7Q99572 595 aaKnown RBP12.92□□□□□ -0.34
VRK3-214ENST00000598553 MCM9Q9NXL9 1143 aa12.92□□□□□ -0.34
VRK3-214ENST00000598553 MYH4Q9Y623 1939 aa12.92□□□□□ -0.34
VRK3-214ENST00000598553 A0A1W2PRG0 241 aa12.91□□□□□ -0.34
VRK3-214ENST00000598553 GRK4P32298 578 aa12.91□□□□□ -0.34
VRK3-214ENST00000598553 TRIM32Q13049 653 aa12.91□□□□□ -0.34
VRK3-214ENST00000598553 SEPT2Q15019 361 aa12.91□□□□□ -0.34
VRK3-214ENST00000598553 FAM110CQ1W6H9 321 aa12.91□□□□□ -0.34
VRK3-214ENST00000598553 TRIM34Q9BYJ4 488 aa12.91□□□□□ -0.34
VRK3-214ENST00000598553 AS3MTQ9HBK9 375 aa12.91□□□□□ -0.34
VRK3-214ENST00000598553 USP17L10C9JJH3 530 aa12.9□□□□□ -0.34
VRK3-214ENST00000598553 TNPO2O14787 897 aaKnown RBP12.9□□□□□ -0.34
VRK3-214ENST00000598553 CNMDO75829 334 aa12.9□□□□□ -0.34
VRK3-214ENST00000598553 POLR3DP05423 398 aaPredicted RBP12.9□□□□□ -0.34
VRK3-214ENST00000598553 AKR1B1P15121 316 aa12.9□□□□□ -0.34
VRK3-214ENST00000598553 RAB3GAP1Q15042 981 aa12.9□□□□□ -0.34
VRK3-214ENST00000598553 Q3C1V9 767 aa12.9□□□□□ -0.34
VRK3-214ENST00000598553 RAET1EQ8TD07 263 aa12.9□□□□□ -0.34
VRK3-214ENST00000598553 CRNKL1Q9BZJ0 848 aaKnown RBP12.9□□□□□ -0.34
VRK3-214ENST00000598553 UNC93B1Q9H1C4 597 aa12.9□□□□□ -0.34
VRK3-214ENST00000598553 CHMP4BQ9H444 224 aaKnown RBP12.9□□□□□ -0.34
VRK3-214ENST00000598553 ECHDC1Q9NTX5 307 aa12.9□□□□□ -0.34
VRK3-214ENST00000598553 M0R2C6 588 aa12.89□□□□□ -0.35
VRK3-214ENST00000598553 GNRH1P01148 92 aa12.89□□□□□ -0.35
VRK3-214ENST00000598553 CCL5P13501 91 aa12.89□□□□□ -0.35
VRK3-214ENST00000598553 HOXA7P31268 230 aaPredicted RBP12.89□□□□□ -0.35
VRK3-214ENST00000598553 PRMT2P55345 433 aa12.89□□□□□ -0.35
VRK3-214ENST00000598553 HERVK_113P62684 666 aa12.89□□□□□ -0.35
VRK3-214ENST00000598553 ARHGEF6Q15052 776 aa12.89□□□□□ -0.35
VRK3-214ENST00000598553 ABCB5Q2M3G0 1257 aa12.89□□□□□ -0.35
VRK3-214ENST00000598553 CERKLQ49MI3 558 aaPredicted RBP12.89□□□□□ -0.35
VRK3-214ENST00000598553 TTC6Q86TZ1 520 aa12.89□□□□□ -0.35
VRK3-214ENST00000598553 SIAH1Q8IUQ4 282 aa12.89□□□□□ -0.35
VRK3-214ENST00000598553 PI4K2BQ8TCG2 481 aa12.89□□□□□ -0.35
VRK3-214ENST00000598553 OSBP2Q969R2 916 aa12.89□□□□□ -0.35
VRK3-214ENST00000598553 TBC1D2Q9BYX2 928 aa12.89□□□□□ -0.35
VRK3-214ENST00000598553 PORCNQ9H237 461 aa12.89□□□□□ -0.35
VRK3-214ENST00000598553 RBPJLQ9UBG7 517 aa12.89□□□□□ -0.35
VRK3-214ENST00000598553 GJD2Q9UKL4 321 aa12.89□□□□□ -0.35
VRK3-214ENST00000598553 TAOK2Q9UL54 1235 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms