RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 ZKSCAN3Q9BRR0 538 aa17.24■□□□□ 0.35
VRK3-212ENST00000596814 DNAJC18Q9H819 358 aa17.24■□□□□ 0.35
VRK3-212ENST00000596814 GPHNQ9NQX3 736 aaPredicted RBP17.24■□□□□ 0.35
VRK3-212ENST00000596814 SCAF8Q9UPN6 1271 aaKnown RBP17.24■□□□□ 0.35
VRK3-212ENST00000596814 PITPNM2Q9BZ72 1349 aa17.24■□□□□ 0.35
VRK3-212ENST00000596814 TSPY3P0CV98 308 aa17.24■□□□□ 0.35
VRK3-212ENST00000596814 TSPY8P0CW00 308 aa17.24■□□□□ 0.35
VRK3-212ENST00000596814 SHMT1P34896 483 aa17.24■□□□□ 0.35
VRK3-212ENST00000596814 USP50Q70EL3 339 aaPredicted RBP17.24■□□□□ 0.35
VRK3-212ENST00000596814 METTL16Q86W50 562 aaKnown RBP17.24■□□□□ 0.35
VRK3-212ENST00000596814 IGDCC4Q8TDY8 1250 aa17.24■□□□□ 0.35
VRK3-212ENST00000596814 ZSCAN31Q96LW9 406 aaPredicted RBP17.24■□□□□ 0.35
VRK3-212ENST00000596814 HERC5Q9UII4 1024 aaKnown RBP17.24■□□□□ 0.35
VRK3-212ENST00000596814 TPCN1Q9ULQ1 816 aa17.24■□□□□ 0.35
VRK3-212ENST00000596814 TNKSO95271 1327 aa17.23■□□□□ 0.35
VRK3-212ENST00000596814 FAM196BA6NMK8 535 aa17.23■□□□□ 0.35
VRK3-212ENST00000596814 APOBRQ0VD83 1088 aa17.23■□□□□ 0.35
VRK3-212ENST00000596814 WTAPQ15007 396 aa17.23■□□□□ 0.35
VRK3-212ENST00000596814 CDAN1Q8IWY9 1227 aa17.23■□□□□ 0.35
VRK3-212ENST00000596814 ZSCAN10Q96SZ4 725 aaPredicted RBP17.23■□□□□ 0.35
VRK3-212ENST00000596814 DEFB129Q9H1M3 183 aa17.23■□□□□ 0.35
VRK3-212ENST00000596814 LY9Q9HBG7 655 aa17.23■□□□□ 0.35
VRK3-212ENST00000596814 SH2B1Q9NRF2 756 aaPredicted RBP17.23■□□□□ 0.35
VRK3-212ENST00000596814 PGAP2Q9UHJ9 254 aa17.23■□□□□ 0.35
VRK3-212ENST00000596814 PLIN4Q96Q06 1357 aa17.22■□□□□ 0.35
VRK3-212ENST00000596814 GREB1LQ9C091 1923 aaPredicted RBP17.22■□□□□ 0.35
VRK3-212ENST00000596814 SLURP2P0DP57 97 aa17.22■□□□□ 0.35
VRK3-212ENST00000596814 LIFRP42702 1097 aa17.22■□□□□ 0.35
VRK3-212ENST00000596814 TEPSINQ96N21 525 aa17.22■□□□□ 0.35
VRK3-212ENST00000596814 POLR2AP24928 1970 aaKnown RBP17.22■□□□□ 0.35
VRK3-212ENST00000596814 LARGE1O95461 756 aa17.21■□□□□ 0.35
VRK3-212ENST00000596814 ME3Q16798 604 aa17.21■□□□□ 0.35
VRK3-212ENST00000596814 NEDD1Q8NHV4 660 aa17.21■□□□□ 0.35
VRK3-212ENST00000596814 TAF1DQ9H5J8 278 aaPredicted RBP17.21■□□□□ 0.35
VRK3-212ENST00000596814 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.21■□□□□ 0.35
VRK3-212ENST00000596814 PPP2R3BQ9Y5P8 575 aa17.21■□□□□ 0.35
VRK3-212ENST00000596814 HSP90AA1P07900 732 aaKnown RBP17.21■□□□□ 0.35
VRK3-212ENST00000596814 AKR1B1P15121 316 aa17.21■□□□□ 0.35
VRK3-212ENST00000596814 EVCP57679 992 aa17.21■□□□□ 0.35
VRK3-212ENST00000596814 SEC23AQ15436 765 aa17.21■□□□□ 0.35
VRK3-212ENST00000596814 CCDC178Q5BJE1 867 aa17.21■□□□□ 0.35
VRK3-212ENST00000596814 TATDN1Q6P1N9 297 aa17.21■□□□□ 0.35
VRK3-212ENST00000596814 NFXL1Q6ZNB6 911 aa17.21■□□□□ 0.35
VRK3-212ENST00000596814 SGMS1Q86VZ5 419 aa17.21■□□□□ 0.35
VRK3-212ENST00000596814 ENAHQ8N8S7 591 aaPredicted RBP17.21■□□□□ 0.35
VRK3-212ENST00000596814 CCDC17Q96LX7 622 aa17.21■□□□□ 0.35
VRK3-212ENST00000596814 TCP11L1Q9NUJ3 509 aa17.21■□□□□ 0.35
VRK3-212ENST00000596814 NAP1L2Q9ULW6 460 aaPredicted RBP17.21■□□□□ 0.35
VRK3-212ENST00000596814 KLF18A0A0U1RQI7 1052 aa17.2■□□□□ 0.34
VRK3-212ENST00000596814 CCDC69A6NI79 296 aa17.2■□□□□ 0.34
VRK3-212ENST00000596814 TBC1D12O60347 775 aa17.2■□□□□ 0.34
VRK3-212ENST00000596814 NMT2O60551 498 aa17.2■□□□□ 0.34
VRK3-212ENST00000596814 CERKLQ49MI3 558 aaPredicted RBP17.2■□□□□ 0.34
VRK3-212ENST00000596814 TMTC2Q8N394 836 aa17.2■□□□□ 0.34
VRK3-212ENST00000596814 DCPSQ96C86 337 aaKnown RBP17.2■□□□□ 0.34
VRK3-212ENST00000596814 SENP2Q9HC62 589 aa17.2■□□□□ 0.34
VRK3-212ENST00000596814 GOLGA8BA8MQT2 603 aa17.19■□□□□ 0.34
VRK3-212ENST00000596814 POTECB2RU33 542 aa17.19■□□□□ 0.34
VRK3-212ENST00000596814 CUL4AQ13619 759 aa17.19■□□□□ 0.34
VRK3-212ENST00000596814 IFIT1BQ5T764 474 aaKnown RBP17.19■□□□□ 0.34
VRK3-212ENST00000596814 ZC3H15Q8WU90 426 aaKnown RBP17.19■□□□□ 0.34
VRK3-212ENST00000596814 ZNF274Q96GC6 653 aaPredicted RBP17.19■□□□□ 0.34
VRK3-212ENST00000596814 IL17RBQ9NRM6 502 aa17.19■□□□□ 0.34
VRK3-212ENST00000596814 BRPF3Q9ULD4 1205 aa17.19■□□□□ 0.34
VRK3-212ENST00000596814 MPHOSPH10O00566 681 aaKnown RBP17.18■□□□□ 0.34
VRK3-212ENST00000596814 STK3Q13188 491 aa17.18■□□□□ 0.34
VRK3-212ENST00000596814 EAPPQ56P03 285 aaPredicted RBP17.18■□□□□ 0.34
VRK3-212ENST00000596814 PNMA8AQ86V59 439 aaPredicted RBP17.18■□□□□ 0.34
VRK3-212ENST00000596814 SULF1Q8IWU6 871 aa17.18■□□□□ 0.34
VRK3-212ENST00000596814 HOOK2Q96ED9 719 aa17.18■□□□□ 0.34
VRK3-212ENST00000596814 SLKQ9H2G2 1235 aaPredicted RBP17.18■□□□□ 0.34
VRK3-212ENST00000596814 PDIA3P30101 505 aaKnown RBP17.18■□□□□ 0.34
VRK3-212ENST00000596814 NBPF12Q5TAG4 269 aaPredicted RBP17.18■□□□□ 0.34
VRK3-212ENST00000596814 APOA5Q6Q788 366 aa17.18■□□□□ 0.34
VRK3-212ENST00000596814 MIGA2Q7L4E1 593 aa17.18■□□□□ 0.34
VRK3-212ENST00000596814 DGKHQ86XP1 1220 aa17.18■□□□□ 0.34
VRK3-212ENST00000596814 CCDC83Q8IWF9 413 aa17.18■□□□□ 0.34
VRK3-212ENST00000596814 SPRYD3Q8NCJ5 442 aa17.18■□□□□ 0.34
VRK3-212ENST00000596814 GTF3C6Q969F1 213 aa17.18■□□□□ 0.34
VRK3-212ENST00000596814 CEP95Q96GE4 821 aa17.18■□□□□ 0.34
VRK3-212ENST00000596814 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.18■□□□□ 0.34
VRK3-212ENST00000596814 SLC12A7Q9Y666 1083 aa17.18■□□□□ 0.34
VRK3-212ENST00000596814 PFKFB2O60825 505 aa17.17■□□□□ 0.34
VRK3-212ENST00000596814 MAP3K10Q02779 954 aa17.17■□□□□ 0.34
VRK3-212ENST00000596814 DCAF15Q66K64 600 aa17.17■□□□□ 0.34
VRK3-212ENST00000596814 RCSD1Q6JBY9 416 aa17.17■□□□□ 0.34
VRK3-212ENST00000596814 SYNE3Q6ZMZ3 975 aa17.17■□□□□ 0.34
VRK3-212ENST00000596814 NECAB1Q8N987 351 aa17.17■□□□□ 0.34
VRK3-212ENST00000596814 STX8Q9UNK0 236 aa17.17■□□□□ 0.34
VRK3-212ENST00000596814 ATAD5Q96QE3 1844 aa17.17■□□□□ 0.34
VRK3-212ENST00000596814 IGKV6D-41A0A0C4DH26 115 aa17.16■□□□□ 0.34
VRK3-212ENST00000596814 ZBTB43O43298 467 aa17.16■□□□□ 0.34
VRK3-212ENST00000596814 GDF11O95390 407 aa17.16■□□□□ 0.34
VRK3-212ENST00000596814 ST3GAL1Q11201 340 aa17.16■□□□□ 0.34
VRK3-212ENST00000596814 ABCB5Q2M3G0 1257 aa17.16■□□□□ 0.34
VRK3-212ENST00000596814 MICU3Q86XE3 530 aa17.16■□□□□ 0.34
VRK3-212ENST00000596814 ZNF654Q8IZM8 581 aa17.16■□□□□ 0.34
VRK3-212ENST00000596814 ANKS1AQ92625 1134 aa17.16■□□□□ 0.34
VRK3-212ENST00000596814 FOXD4L1Q9NU39 408 aa17.16■□□□□ 0.34
VRK3-212ENST00000596814 MYH4Q9Y623 1939 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms