RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	SLC12A7	Q9Y666	1083 aa		17.93	■□□□□ 0.46
DDX39A-209	ENST00000589318	MYH15	Q9Y2K3	1946 aa		17.92	■□□□□ 0.46
DDX39A-209	ENST00000589318		A0A0U1RQG5	324 aa	Predicted RBP	17.92	■□□□□ 0.46
DDX39A-209	ENST00000589318	ERICH2	A1L162	156 aa		17.92	■□□□□ 0.46
DDX39A-209	ENST00000589318	USP17L3	A6NCW0	530 aa		17.92	■□□□□ 0.46
DDX39A-209	ENST00000589318	USP17L4	A6NCW7	530 aa		17.92	■□□□□ 0.46
DDX39A-209	ENST00000589318	PPIP5K2	O43314	1243 aa		17.92	■□□□□ 0.46
DDX39A-209	ENST00000589318	PDE4B	Q07343	736 aa		17.92	■□□□□ 0.46
DDX39A-209	ENST00000589318	USP17L1	Q7RTZ2	530 aa		17.92	■□□□□ 0.46
DDX39A-209	ENST00000589318	FERMT3	Q86UX7	667 aa		17.92	■□□□□ 0.46
DDX39A-209	ENST00000589318	TMTC2	Q8N394	836 aa		17.92	■□□□□ 0.46
DDX39A-209	ENST00000589318	SAP30BP	Q9UHR5	308 aa	Known RBP	17.92	■□□□□ 0.46
DDX39A-209	ENST00000589318	GOLGA8A	A7E2F4	631 aa		17.92	■□□□□ 0.46
DDX39A-209	ENST00000589318	ZSCAN20	P17040	1043 aa	Predicted RBP	17.92	■□□□□ 0.46
DDX39A-209	ENST00000589318	POLD1	P28340	1107 aa		17.92	■□□□□ 0.46
DDX39A-209	ENST00000589318	GTF2F1	P35269	517 aa	Known RBP eCLIP	17.92	■□□□□ 0.46	6e-8	■■■■■ 27.6
DDX39A-209	ENST00000589318	APOBEC3H	Q6NTF7	200 aa	Known RBP	17.92	■□□□□ 0.46
DDX39A-209	ENST00000589318	CCDC144CP	Q8IYA2	1237 aa		17.92	■□□□□ 0.46
DDX39A-209	ENST00000589318	ATP6V1D	Q9Y5K8	247 aa		17.92	■□□□□ 0.46
DDX39A-209	ENST00000589318	FER1L6	Q2WGJ9	1857 aa		17.91	■□□□□ 0.46
DDX39A-209	ENST00000589318	CPLX1	O14810	134 aa		17.91	■□□□□ 0.46
DDX39A-209	ENST00000589318	WDHD1	O75717	1129 aa	Predicted RBP	17.91	■□□□□ 0.46
DDX39A-209	ENST00000589318	RCAN1	P53805	252 aa		17.91	■□□□□ 0.46
DDX39A-209	ENST00000589318	FAM47A	Q5JRC9	791 aa		17.91	■□□□□ 0.46
DDX39A-209	ENST00000589318	IQCA1	Q86XH1	822 aa		17.91	■□□□□ 0.46
DDX39A-209	ENST00000589318	ZNF654	Q8IZM8	581 aa		17.91	■□□□□ 0.46
DDX39A-209	ENST00000589318	TEKT1	Q969V4	418 aa		17.91	■□□□□ 0.46
DDX39A-209	ENST00000589318	MRI	Q9BWK5	157 aa		17.91	■□□□□ 0.46
DDX39A-209	ENST00000589318	GDPD2	Q9HCC8	539 aa		17.91	■□□□□ 0.46
DDX39A-209	ENST00000589318	CNPY2	Q9Y2B0	182 aa		17.91	■□□□□ 0.46
DDX39A-209	ENST00000589318	NMT2	O60551	498 aa		17.9	■□□□□ 0.46
DDX39A-209	ENST00000589318	CRK	P46108	304 aa		17.9	■□□□□ 0.46
DDX39A-209	ENST00000589318	DNM1	Q05193	864 aa	Known RBP	17.9	■□□□□ 0.46
DDX39A-209	ENST00000589318	REST	Q13127	1097 aa		17.9	■□□□□ 0.46
DDX39A-209	ENST00000589318	KIAA0825	Q8IV33	1275 aa		17.9	■□□□□ 0.46
DDX39A-209	ENST00000589318	TMEM87A	Q8NBN3	555 aa		17.9	■□□□□ 0.46
DDX39A-209	ENST00000589318	SLC44A5	Q8NCS7	719 aa		17.9	■□□□□ 0.46
DDX39A-209	ENST00000589318	DDX4	Q9NQI0	724 aa	Known RBP	17.9	■□□□□ 0.46
DDX39A-209	ENST00000589318	ORC3	Q9UBD5	711 aa	Predicted RBP	17.9	■□□□□ 0.46
DDX39A-209	ENST00000589318	KIF3A	Q9Y496	699 aa		17.9	■□□□□ 0.46
DDX39A-209	ENST00000589318	POLR3D	P05423	398 aa	Predicted RBP	17.9	■□□□□ 0.46
DDX39A-209	ENST00000589318	CDC42EP5	Q6NZY7	148 aa		17.9	■□□□□ 0.46
DDX39A-209	ENST00000589318	ZDHHC15	Q96MV8	337 aa		17.9	■□□□□ 0.46
DDX39A-209	ENST00000589318	PIM2	Q9P1W9	311 aa		17.9	■□□□□ 0.46
DDX39A-209	ENST00000589318	NT5C2	P49902	561 aa		17.89	■□□□□ 0.45
DDX39A-209	ENST00000589318	HDLBP	Q00341	1268 aa	Known RBP	17.89	■□□□□ 0.45
DDX39A-209	ENST00000589318	FAM173B	Q6P4H8	233 aa		17.89	■□□□□ 0.45
DDX39A-209	ENST00000589318	AMOTL1	Q8IY63	956 aa		17.89	■□□□□ 0.45
DDX39A-209	ENST00000589318	GPT2	Q8TD30	523 aa		17.89	■□□□□ 0.45
DDX39A-209	ENST00000589318	ZNF277	Q9NRM2	450 aa	Predicted RBP	17.89	■□□□□ 0.45
DDX39A-209	ENST00000589318	PCDHAC2	Q9Y5I4	1007 aa		17.89	■□□□□ 0.45
DDX39A-209	ENST00000589318		H3BQV1	296 aa		17.88	■□□□□ 0.45
DDX39A-209	ENST00000589318	FOSB	P53539	338 aa		17.88	■□□□□ 0.45
DDX39A-209	ENST00000589318	IFIT1B	Q5T764	474 aa	Known RBP	17.88	■□□□□ 0.45
DDX39A-209	ENST00000589318	IFFO2	Q5TF58	517 aa		17.88	■□□□□ 0.45
DDX39A-209	ENST00000589318	RCSD1	Q6JBY9	416 aa		17.88	■□□□□ 0.45
DDX39A-209	ENST00000589318	LRSAM1	Q6UWE0	723 aa		17.88	■□□□□ 0.45
DDX39A-209	ENST00000589318	SYNE3	Q6ZMZ3	975 aa		17.88	■□□□□ 0.45
DDX39A-209	ENST00000589318	C16orf86	Q6ZW13	317 aa		17.88	■□□□□ 0.45
DDX39A-209	ENST00000589318	USP48	Q86UV5	1035 aa		17.88	■□□□□ 0.45
DDX39A-209	ENST00000589318	RBSN	Q9H1K0	784 aa		17.88	■□□□□ 0.45
DDX39A-209	ENST00000589318	USP40	Q9NVE5	1235 aa		17.88	■□□□□ 0.45
DDX39A-209	ENST00000589318	TSPY2	A6NKD2	308 aa		17.88	■□□□□ 0.45
DDX39A-209	ENST00000589318	RASA1	P20936	1047 aa		17.88	■□□□□ 0.45
DDX39A-209	ENST00000589318	PTGER2	P43116	358 aa		17.88	■□□□□ 0.45
DDX39A-209	ENST00000589318	RTN1	Q16799	776 aa		17.88	■□□□□ 0.45
DDX39A-209	ENST00000589318	PHKB	Q93100	1093 aa		17.88	■□□□□ 0.45
DDX39A-209	ENST00000589318	IL17RB	Q9NRM6	502 aa		17.88	■□□□□ 0.45
DDX39A-209	ENST00000589318	CDKL5	O76039	1030 aa		17.87	■□□□□ 0.45
DDX39A-209	ENST00000589318	IFNAR1	P17181	557 aa		17.87	■□□□□ 0.45
DDX39A-209	ENST00000589318	TROAP	Q12815	778 aa		17.87	■□□□□ 0.45
DDX39A-209	ENST00000589318	CAVIN1	Q6NZI2	390 aa	Known RBP	17.87	■□□□□ 0.45
DDX39A-209	ENST00000589318	FANCB	Q8NB91	859 aa		17.87	■□□□□ 0.45
DDX39A-209	ENST00000589318	SIPA1L1	O43166	1804 aa		17.87	■□□□□ 0.45
DDX39A-209	ENST00000589318	STK36	Q9NRP7	1315 aa		17.86	■□□□□ 0.45
DDX39A-209	ENST00000589318	MYH6	P13533	1939 aa		17.86	■□□□□ 0.45
DDX39A-209	ENST00000589318	MYH8	P13535	1937 aa		17.86	■□□□□ 0.45
DDX39A-209	ENST00000589318	CDK8	P49336	464 aa		17.86	■□□□□ 0.45
DDX39A-209	ENST00000589318	TFAP4	Q01664	338 aa		17.86	■□□□□ 0.45
DDX39A-209	ENST00000589318	PICALM	Q13492	652 aa		17.86	■□□□□ 0.45
DDX39A-209	ENST00000589318	SOGA3	Q5TF21	947 aa		17.86	■□□□□ 0.45
DDX39A-209	ENST00000589318	CPLX2	Q6PUV4	134 aa	Known RBP	17.86	■□□□□ 0.45
DDX39A-209	ENST00000589318	NBPF11	Q86T75	865 aa		17.86	■□□□□ 0.45
DDX39A-209	ENST00000589318	AIFM3	Q96NN9	605 aa		17.86	■□□□□ 0.45
DDX39A-209	ENST00000589318	VPS33B	Q9H267	617 aa		17.86	■□□□□ 0.45
DDX39A-209	ENST00000589318	GJB4	Q9NTQ9	266 aa		17.86	■□□□□ 0.45
DDX39A-209	ENST00000589318	SERPINA10	Q9UK55	444 aa		17.86	■□□□□ 0.45
DDX39A-209	ENST00000589318	PSD	A5PKW4	1024 aa	Predicted RBP	17.86	■□□□□ 0.45
DDX39A-209	ENST00000589318	GADD45B	O75293	160 aa	Predicted RBP	17.86	■□□□□ 0.45
DDX39A-209	ENST00000589318	MBD3	O95983	291 aa		17.86	■□□□□ 0.45
DDX39A-209	ENST00000589318	GUCY1B3	Q02153	619 aa		17.86	■□□□□ 0.45
DDX39A-209	ENST00000589318	GABPA	Q06546	454 aa		17.86	■□□□□ 0.45
DDX39A-209	ENST00000589318	OTUD7B	Q6GQQ9	843 aa		17.86	■□□□□ 0.45
DDX39A-209	ENST00000589318	LARGE2	Q8N3Y3	721 aa		17.86	■□□□□ 0.45
DDX39A-209	ENST00000589318	FBXO18	Q8NFZ0	1043 aa		17.86	■□□□□ 0.45
DDX39A-209	ENST00000589318	NUP133	Q8WUM0	1156 aa		17.86	■□□□□ 0.45
DDX39A-209	ENST00000589318	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	17.86	■□□□□ 0.45
DDX39A-209	ENST00000589318	MKNK2	Q9HBH9	465 aa		17.86	■□□□□ 0.45
DDX39A-209	ENST00000589318	UBE2Q2L	H0YL09	131 aa		17.85	■□□□□ 0.45
DDX39A-209	ENST00000589318	NFIA	Q12857	509 aa		17.85	■□□□□ 0.45

Retrieved 100 of 20,778 RNA–protein pairs in 111.1 ms