RNA–Protein interactions for RNA: ENST00000583438.1

PPP4R1-225, Transcript of protein phosphatase 4 regulatory subunit 1, human

TSL 4

Gene PPP4R1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R1-225	ENST00000583438	PRR20C	P86479	221 aa		10.13	□□□□□ -0.79
PPP4R1-225	ENST00000583438	PRR20D	P86480	221 aa		10.13	□□□□□ -0.79
PPP4R1-225	ENST00000583438	PRR20B	P86481	221 aa		10.13	□□□□□ -0.79
PPP4R1-225	ENST00000583438	PRR20A	P86496	221 aa		10.13	□□□□□ -0.79
PPP4R1-225	ENST00000583438	EPHA10	Q5JZY3	1008 aa		10.13	□□□□□ -0.79
PPP4R1-225	ENST00000583438	LDLRAD1	Q5T700	205 aa		10.13	□□□□□ -0.79
PPP4R1-225	ENST00000583438	KSR2	Q6VAB6	950 aa		10.13	□□□□□ -0.79
PPP4R1-225	ENST00000583438	PODN	Q7Z5L7	613 aa		10.13	□□□□□ -0.79
PPP4R1-225	ENST00000583438	PLEKHM2	Q8IWE5	1019 aa		10.13	□□□□□ -0.79
PPP4R1-225	ENST00000583438	CYP4X1	Q8N118	509 aa		10.13	□□□□□ -0.79
PPP4R1-225	ENST00000583438	TMPRSS4	Q9NRS4	437 aa		10.13	□□□□□ -0.79
PPP4R1-225	ENST00000583438	DOLK	Q9UPQ8	538 aa		10.13	□□□□□ -0.79
PPP4R1-225	ENST00000583438	JAG2	Q9Y219	1238 aa		10.13	□□□□□ -0.79
PPP4R1-225	ENST00000583438	PCDHB11	Q9Y5F2	797 aa		10.13	□□□□□ -0.79
PPP4R1-225	ENST00000583438	TTC24	A2A3L6	582 aa	Predicted RBP	10.12	□□□□□ -0.79
PPP4R1-225	ENST00000583438	GNAI1	P63096	354 aa		10.12	□□□□□ -0.79
PPP4R1-225	ENST00000583438	FKBP1B	P68106	108 aa		10.12	□□□□□ -0.79
PPP4R1-225	ENST00000583438	NR5A1	Q13285	461 aa		10.12	□□□□□ -0.79
PPP4R1-225	ENST00000583438	NCOA4	Q13772	614 aa		10.12	□□□□□ -0.79
PPP4R1-225	ENST00000583438	MAP7D1	Q3KQU3	841 aa		10.12	□□□□□ -0.79
PPP4R1-225	ENST00000583438	STRIP1	Q5VSL9	837 aa		10.12	□□□□□ -0.79
PPP4R1-225	ENST00000583438	ZNF804B	A4D1E1	1349 aa		10.11	□□□□□ -0.79
PPP4R1-225	ENST00000583438	CEP290	O15078	2479 aa		10.11	□□□□□ -0.79
PPP4R1-225	ENST00000583438	TAF5L	O75529	589 aa		10.11	□□□□□ -0.79
PPP4R1-225	ENST00000583438	CSF1R	P07333	972 aa		10.11	□□□□□ -0.79
PPP4R1-225	ENST00000583438	ITGA6	P23229	1130 aa		10.11	□□□□□ -0.79
PPP4R1-225	ENST00000583438	GTF2I	P78347	998 aa		10.11	□□□□□ -0.79
PPP4R1-225	ENST00000583438	FOXO4	P98177	505 aa		10.11	□□□□□ -0.79
PPP4R1-225	ENST00000583438	NNT	Q13423	1086 aa		10.11	□□□□□ -0.79
PPP4R1-225	ENST00000583438	GCKR	Q14397	625 aa		10.11	□□□□□ -0.79
PPP4R1-225	ENST00000583438	GRIK5	Q16478	980 aa		10.11	□□□□□ -0.79
PPP4R1-225	ENST00000583438	CCDC116	Q8IYX3	515 aa		10.11	□□□□□ -0.79
PPP4R1-225	ENST00000583438	PLA2G12B	Q9BX93	195 aa		10.11	□□□□□ -0.79
PPP4R1-225	ENST00000583438	CFHR5	Q9BXR6	569 aa		10.11	□□□□□ -0.79
PPP4R1-225	ENST00000583438	PTPRF	P10586	1907 aa		10.1	□□□□□ -0.79
PPP4R1-225	ENST00000583438	SMPD1	P17405	629 aa		10.1	□□□□□ -0.79
PPP4R1-225	ENST00000583438	CHRND	Q07001	517 aa		10.1	□□□□□ -0.79
PPP4R1-225	ENST00000583438	OXLD1	Q5BKU9	147 aa		10.1	□□□□□ -0.79
PPP4R1-225	ENST00000583438	PPP1R26	Q5T8A7	1209 aa	Predicted RBP	10.1	□□□□□ -0.79
PPP4R1-225	ENST00000583438	CCDC30	Q5VVM6	783 aa		10.1	□□□□□ -0.79
PPP4R1-225	ENST00000583438	CDC5L	Q99459	802 aa	Known RBP	10.1	□□□□□ -0.79
PPP4R1-225	ENST00000583438	PTPN18	Q99952	460 aa		10.1	□□□□□ -0.79
PPP4R1-225	ENST00000583438	COA1	Q9GZY4	146 aa		10.1	□□□□□ -0.79
PPP4R1-225	ENST00000583438	CD209	Q9NNX6	404 aa		10.1	□□□□□ -0.79
PPP4R1-225	ENST00000583438	ANGEL1	Q9UNK9	670 aa	Known RBP	10.1	□□□□□ -0.79
PPP4R1-225	ENST00000583438	WASF2	Q9Y6W5	498 aa		10.1	□□□□□ -0.79
PPP4R1-225	ENST00000583438	MGAM	O43451	1857 aa		10.1	□□□□□ -0.79
PPP4R1-225	ENST00000583438	COL1A1	P02452	1464 aa	Predicted RBP	10.1	□□□□□ -0.79
PPP4R1-225	ENST00000583438	ALPK3	Q96L96	1907 aa		10.09	□□□□□ -0.79
PPP4R1-225	ENST00000583438	CLRN2	A0PK11	232 aa		10.09	□□□□□ -0.79
PPP4R1-225	ENST00000583438		F6X3S4	739 aa		10.09	□□□□□ -0.79
PPP4R1-225	ENST00000583438	SCTR	P47872	440 aa		10.09	□□□□□ -0.79
PPP4R1-225	ENST00000583438	NOM1	Q5C9Z4	860 aa	Known RBP	10.09	□□□□□ -0.79
PPP4R1-225	ENST00000583438	NBPF12	Q5TAG4	269 aa	Predicted RBP	10.09	□□□□□ -0.79
PPP4R1-225	ENST00000583438	TTLL5	Q6EMB2	1281 aa		10.09	□□□□□ -0.79
PPP4R1-225	ENST00000583438	PBXIP1	Q96AQ6	731 aa		10.09	□□□□□ -0.79
PPP4R1-225	ENST00000583438	ZNF594	Q96JF6	807 aa	Predicted RBP	10.09	□□□□□ -0.79
PPP4R1-225	ENST00000583438	PRMT6	Q96LA8	375 aa	Predicted RBP	10.09	□□□□□ -0.79
PPP4R1-225	ENST00000583438	FANCI	Q9NVI1	1328 aa		10.08	□□□□□ -0.8
PPP4R1-225	ENST00000583438	PHIP	Q8WWQ0	1821 aa		10.08	□□□□□ -0.8
PPP4R1-225	ENST00000583438		F8W031	263 aa	Predicted RBP	10.08	□□□□□ -0.8
PPP4R1-225	ENST00000583438	LZTS3	O60299	673 aa	Predicted RBP	10.08	□□□□□ -0.8
PPP4R1-225	ENST00000583438	DHX9	Q08211	1270 aa	Known RBP	10.08	□□□□□ -0.8
PPP4R1-225	ENST00000583438	MAP3K11	Q16584	847 aa		10.08	□□□□□ -0.8
PPP4R1-225	ENST00000583438	EML3	Q32P44	896 aa		10.08	□□□□□ -0.8
PPP4R1-225	ENST00000583438	TWISTNB	Q3B726	338 aa	Predicted RBP	10.08	□□□□□ -0.8
PPP4R1-225	ENST00000583438	FBXO46	Q6PJ61	603 aa	Predicted RBP	10.08	□□□□□ -0.8
PPP4R1-225	ENST00000583438	OTOP1	Q7RTM1	612 aa		10.08	□□□□□ -0.8
PPP4R1-225	ENST00000583438	KAZALD1	Q96I82	304 aa		10.08	□□□□□ -0.8
PPP4R1-225	ENST00000583438	WNK4	Q96J92	1243 aa		10.08	□□□□□ -0.8
PPP4R1-225	ENST00000583438	DEFB129	Q9H1M3	183 aa		10.08	□□□□□ -0.8
PPP4R1-225	ENST00000583438	LEMD3	Q9Y2U8	911 aa		10.08	□□□□□ -0.8
PPP4R1-225	ENST00000583438	CD99L2	Q8TCZ2	262 aa		10.07	□□□□□ -0.8
PPP4R1-225	ENST00000583438	TEPSIN	Q96N21	525 aa		10.07	□□□□□ -0.8
PPP4R1-225	ENST00000583438	VRTN	Q9H8Y1	702 aa		10.07	□□□□□ -0.8
PPP4R1-225	ENST00000583438	RANBP2	P49792	3224 aa	Known RBP	10.07	□□□□□ -0.8
PPP4R1-225	ENST00000583438	TRIOBP	Q9H2D6	2365 aa		10.07	□□□□□ -0.8
PPP4R1-225	ENST00000583438	MYO3B	Q8WXR4	1341 aa		10.07	□□□□□ -0.8
PPP4R1-225	ENST00000583438	DOCK2	Q92608	1830 aa		10.06	□□□□□ -0.8
PPP4R1-225	ENST00000583438	FKTN	O75072	461 aa		10.06	□□□□□ -0.8
PPP4R1-225	ENST00000583438	VAMP4	O75379	141 aa		10.06	□□□□□ -0.8
PPP4R1-225	ENST00000583438	USP2	O75604	605 aa	Predicted RBP	10.06	□□□□□ -0.8
PPP4R1-225	ENST00000583438	DDX58	O95786	925 aa	Known RBP	10.06	□□□□□ -0.8
PPP4R1-225	ENST00000583438	IL1R1	P14778	569 aa		10.06	□□□□□ -0.8
PPP4R1-225	ENST00000583438	ERVK-9	P63128	1117 aa		10.06	□□□□□ -0.8
PPP4R1-225	ENST00000583438	CRHR2	Q13324	411 aa		10.06	□□□□□ -0.8
PPP4R1-225	ENST00000583438	CFAP100	Q494V2	611 aa		10.06	□□□□□ -0.8
PPP4R1-225	ENST00000583438	C15orf52	Q6ZUT6	534 aa	Known RBP	10.06	□□□□□ -0.8
PPP4R1-225	ENST00000583438	APOBEC3F	Q8IUX4	373 aa	Known RBP	10.06	□□□□□ -0.8
PPP4R1-225	ENST00000583438	DNAAF4	Q8WXU2	420 aa		10.06	□□□□□ -0.8
PPP4R1-225	ENST00000583438	KLF16	Q9BXK1	252 aa	Predicted RBP	10.06	□□□□□ -0.8
PPP4R1-225	ENST00000583438	PUS3	Q9BZE2	481 aa	Known RBP	10.06	□□□□□ -0.8
PPP4R1-225	ENST00000583438	CYLD	Q9NQC7	956 aa		10.06	□□□□□ -0.8
PPP4R1-225	ENST00000583438	HDAC9	Q9UKV0	1011 aa		10.06	□□□□□ -0.8
PPP4R1-225	ENST00000583438	DOCK3	Q8IZD9	2030 aa		10.06	□□□□□ -0.8
PPP4R1-225	ENST00000583438	LILRA1	O75019	489 aa		10.05	□□□□□ -0.8
PPP4R1-225	ENST00000583438	IGHMBP2	P38935	993 aa	Known RBP	10.05	□□□□□ -0.8
PPP4R1-225	ENST00000583438	BEND3	Q5T5X7	828 aa		10.05	□□□□□ -0.8
PPP4R1-225	ENST00000583438	HPS1	Q92902	700 aa		10.05	□□□□□ -0.8
PPP4R1-225	ENST00000583438	NOD1	Q9Y239	953 aa		10.05	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 13 ms