RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 PLCD1P51178 756 aa12.31□□□□□ -0.44
SS18-217ENST00000580958 FOSBP53539 338 aa12.31□□□□□ -0.44
SS18-217ENST00000580958 HDLBPQ00341 1268 aaKnown RBP12.31□□□□□ -0.44
SS18-217ENST00000580958 MCTP1Q6DN14 999 aa12.31□□□□□ -0.44
SS18-217ENST00000580958 APOBEC3HQ6NTF7 200 aaKnown RBP12.31□□□□□ -0.44
SS18-217ENST00000580958 SYNE3Q6ZMZ3 975 aa12.31□□□□□ -0.44
SS18-217ENST00000580958 CCDC144CPQ8IYA2 1237 aa12.31□□□□□ -0.44
SS18-217ENST00000580958 ENAHQ8N8S7 591 aaPredicted RBP12.31□□□□□ -0.44
SS18-217ENST00000580958 FAM184AQ8NB25 1140 aa12.31□□□□□ -0.44
SS18-217ENST00000580958 SLC44A5Q8NCS7 719 aa12.31□□□□□ -0.44
SS18-217ENST00000580958 KIF12Q96FN5 646 aa12.31□□□□□ -0.44
SS18-217ENST00000580958 ZDHHC15Q96MV8 337 aa12.31□□□□□ -0.44
SS18-217ENST00000580958 ZSCAN10Q96SZ4 725 aaPredicted RBP12.31□□□□□ -0.44
SS18-217ENST00000580958 MRIQ9BWK5 157 aa12.31□□□□□ -0.44
SS18-217ENST00000580958 VPS33BQ9H267 617 aa12.31□□□□□ -0.44
SS18-217ENST00000580958 SLC12A7Q9Y666 1083 aa12.31□□□□□ -0.44
SS18-217ENST00000580958 NID2Q14112 1375 aa12.3□□□□□ -0.44
SS18-217ENST00000580958 BAZ2BQ9UIF8 2168 aaKnown RBP12.3□□□□□ -0.44
SS18-217ENST00000580958 GOLGA6L22H0YM25 854 aa12.3□□□□□ -0.44
SS18-217ENST00000580958 PSMD14O00487 310 aa12.3□□□□□ -0.44
SS18-217ENST00000580958 CPLX1O14810 134 aa12.3□□□□□ -0.44
SS18-217ENST00000580958 DHX16O60231 1041 aaKnown RBP12.3□□□□□ -0.44
SS18-217ENST00000580958 PPFIA3O75145 1194 aa12.3□□□□□ -0.44
SS18-217ENST00000580958 CDC27P30260 824 aa12.3□□□□□ -0.44
SS18-217ENST00000580958 RBM5P52756 815 aaKnown RBP eCLIP12.3□□□□□ -0.44
SS18-217ENST00000580958 FOXD4L6Q3SYB3 417 aaPredicted RBP12.3□□□□□ -0.44
SS18-217ENST00000580958 ASTLQ6HA08 431 aaPredicted RBP12.3□□□□□ -0.44
SS18-217ENST00000580958 RSBN1LQ6PCB5 846 aaPredicted RBP12.3□□□□□ -0.44
SS18-217ENST00000580958 FOXD4L3Q6VB84 417 aaPredicted RBP12.3□□□□□ -0.44
SS18-217ENST00000580958 CDC37L1Q7L3B6 337 aa12.3□□□□□ -0.44
SS18-217ENST00000580958 IQCA1Q86XH1 822 aa12.3□□□□□ -0.44
SS18-217ENST00000580958 NIM1KQ8IY84 436 aa12.3□□□□□ -0.44
SS18-217ENST00000580958 ZNF654Q8IZM8 581 aa12.3□□□□□ -0.44
SS18-217ENST00000580958 TMTC2Q8N394 836 aa12.3□□□□□ -0.44
SS18-217ENST00000580958 NLGN2Q8NFZ4 835 aa12.3□□□□□ -0.44
SS18-217ENST00000580958 TAOK3Q9H2K8 898 aa12.3□□□□□ -0.44
SS18-217ENST00000580958 MKNK2Q9HBH9 465 aa12.3□□□□□ -0.44
SS18-217ENST00000580958 DDX4Q9NQI0 724 aaKnown RBP12.3□□□□□ -0.44
SS18-217ENST00000580958 BCS1LQ9Y276 419 aa12.3□□□□□ -0.44
SS18-217ENST00000580958 SBF1O95248 1867 aa12.29□□□□□ -0.44
SS18-217ENST00000580958 GREB1LQ9C091 1923 aaPredicted RBP12.29□□□□□ -0.44
SS18-217ENST00000580958 TSPY2A6NKD2 308 aa12.29□□□□□ -0.44
SS18-217ENST00000580958 NFKBIEO00221 500 aa12.29□□□□□ -0.44
SS18-217ENST00000580958 PDIA4P13667 645 aaKnown RBP12.29□□□□□ -0.44
SS18-217ENST00000580958 FDPSP14324 419 aaKnown RBP12.29□□□□□ -0.44
SS18-217ENST00000580958 PTMSP20962 102 aa12.29□□□□□ -0.44
SS18-217ENST00000580958 ADD1P35611 737 aaKnown RBP12.29□□□□□ -0.44
SS18-217ENST00000580958 CDK8P49336 464 aa12.29□□□□□ -0.44
SS18-217ENST00000580958 TFAP4Q01664 338 aa12.29□□□□□ -0.44
SS18-217ENST00000580958 CFAP100Q494V2 611 aa12.29□□□□□ -0.44
SS18-217ENST00000580958 IFIT1BQ5T764 474 aaKnown RBP12.29□□□□□ -0.44
SS18-217ENST00000580958 C16orf86Q6ZW13 317 aa12.29□□□□□ -0.44
SS18-217ENST00000580958 FAM217BQ9NTX9 383 aaPredicted RBP12.29□□□□□ -0.44
SS18-217ENST00000580958 SERPINA10Q9UK55 444 aa12.29□□□□□ -0.44
SS18-217ENST00000580958 ZNRF3Q9ULT6 936 aa12.29□□□□□ -0.44
SS18-217ENST00000580958 KIF3AQ9Y496 699 aa12.29□□□□□ -0.44
SS18-217ENST00000580958 MYO3BQ8WXR4 1341 aa12.29□□□□□ -0.44
SS18-217ENST00000580958 H3BQV1 296 aa12.28□□□□□ -0.44
SS18-217ENST00000580958 ATMINO43313 823 aaPredicted RBP12.28□□□□□ -0.44
SS18-217ENST00000580958 NMT2O60551 498 aa12.28□□□□□ -0.44
SS18-217ENST00000580958 VIL1P09327 827 aaKnown RBP12.28□□□□□ -0.44
SS18-217ENST00000580958 RASA1P20936 1047 aa12.28□□□□□ -0.44
SS18-217ENST00000580958 NT5C2P49902 561 aa12.28□□□□□ -0.44
SS18-217ENST00000580958 NFIAQ12857 509 aa12.28□□□□□ -0.44
SS18-217ENST00000580958 RTN1Q16799 776 aa12.28□□□□□ -0.44
SS18-217ENST00000580958 IFFO2Q5TF58 517 aa12.28□□□□□ -0.44
SS18-217ENST00000580958 CPLX2Q6PUV4 134 aaKnown RBP12.28□□□□□ -0.44
SS18-217ENST00000580958 FERMT3Q86UX7 667 aa12.28□□□□□ -0.44
SS18-217ENST00000580958 ZNF444Q8N0Y2 327 aaPredicted RBP12.28□□□□□ -0.44
SS18-217ENST00000580958 NUP133Q8WUM0 1156 aa12.28□□□□□ -0.44
SS18-217ENST00000580958 OSBPL5Q9H0X9 879 aaPredicted RBP12.28□□□□□ -0.44
SS18-217ENST00000580958 ORC3Q9UBD5 711 aaPredicted RBP12.28□□□□□ -0.44
SS18-217ENST00000580958 TRAK2O60296 914 aa12.27□□□□□ -0.45
SS18-217ENST00000580958 CDKL5O76039 1030 aa12.27□□□□□ -0.45
SS18-217ENST00000580958 RCAN1P53805 252 aa12.27□□□□□ -0.45
SS18-217ENST00000580958 CACNB3P54284 484 aa12.27□□□□□ -0.45
SS18-217ENST00000580958 RASSF7Q02833 373 aa12.27□□□□□ -0.45
SS18-217ENST00000580958 NTRK3Q16288 839 aa12.27□□□□□ -0.45
SS18-217ENST00000580958 CATIPQ7Z7H3 387 aa12.27□□□□□ -0.45
SS18-217ENST00000580958 TTC6Q86TZ1 520 aa12.27□□□□□ -0.45
SS18-217ENST00000580958 GMLQ99445 158 aa12.27□□□□□ -0.45
SS18-217ENST00000580958 ZNF287Q9HBT7 754 aa12.27□□□□□ -0.45
SS18-217ENST00000580958 SPON1Q9HCB6 807 aa12.27□□□□□ -0.45
SS18-217ENST00000580958 LMBRD1Q9NUN5 540 aa12.27□□□□□ -0.45
SS18-217ENST00000580958 ATP6V1DQ9Y5K8 247 aa12.27□□□□□ -0.45
SS18-217ENST00000580958 MAP3K13O43283 966 aa12.26□□□□□ -0.45
SS18-217ENST00000580958 TSPY3P0CV98 308 aa12.26□□□□□ -0.45
SS18-217ENST00000580958 TSPY8P0CW00 308 aa12.26□□□□□ -0.45
SS18-217ENST00000580958 GUCY1B3Q02153 619 aa12.26□□□□□ -0.45
SS18-217ENST00000580958 CXCL9Q07325 125 aa12.26□□□□□ -0.45
SS18-217ENST00000580958 RESTQ13127 1097 aa12.26□□□□□ -0.45
SS18-217ENST00000580958 CCDC178Q5BJE1 867 aa12.26□□□□□ -0.45
SS18-217ENST00000580958 ZFPM1Q8IX07 1006 aa12.26□□□□□ -0.45
SS18-217ENST00000580958 JDP2Q8WYK2 163 aa12.26□□□□□ -0.45
SS18-217ENST00000580958 SLC39A7Q92504 469 aa12.26□□□□□ -0.45
SS18-217ENST00000580958 PHKBQ93100 1093 aa12.26□□□□□ -0.45
SS18-217ENST00000580958 IL17RBQ9NRM6 502 aa12.26□□□□□ -0.45
SS18-217ENST00000580958 FAM198AQ9UFP1 575 aa12.26□□□□□ -0.45
SS18-217ENST00000580958 METRNQ9UJH8 293 aa12.26□□□□□ -0.45
SS18-217ENST00000580958 HDAC9Q9UKV0 1011 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms