RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 SERPINB13Q9UIV8 391 aa17.62■□□□□ 0.41
SMARCE1-216ENST00000580419 PALD1Q9ULE6 856 aa17.62■□□□□ 0.41
SMARCE1-216ENST00000580419 USP17L10C9JJH3 530 aa17.61■□□□□ 0.41
SMARCE1-216ENST00000580419 UBXN2AP68543 259 aa17.61■□□□□ 0.41
SMARCE1-216ENST00000580419 SLC4A8Q2Y0W8 1093 aa17.61■□□□□ 0.41
SMARCE1-216ENST00000580419 TREML2Q5T2D2 321 aa17.61■□□□□ 0.41
SMARCE1-216ENST00000580419 SH3TC2Q8TF17 1288 aa17.61■□□□□ 0.41
SMARCE1-216ENST00000580419 C12orf42Q96LP6 360 aa17.61■□□□□ 0.41
SMARCE1-216ENST00000580419 ZBTB21Q9ULJ3 1066 aa17.61■□□□□ 0.41
SMARCE1-216ENST00000580419 COG6Q9Y2V7 657 aa17.61■□□□□ 0.41
SMARCE1-216ENST00000580419 IFIT2P09913 472 aaKnown RBP17.6■□□□□ 0.41
SMARCE1-216ENST00000580419 ATP5JP18859 108 aa17.6■□□□□ 0.41
SMARCE1-216ENST00000580419 GJA8P48165 433 aa17.6■□□□□ 0.41
SMARCE1-216ENST00000580419 HMGCS2P54868 508 aa17.6■□□□□ 0.41
SMARCE1-216ENST00000580419 PRKCZQ05513 592 aa17.6■□□□□ 0.41
SMARCE1-216ENST00000580419 COA7Q96BR5 231 aa17.6■□□□□ 0.41
SMARCE1-216ENST00000580419 ASCC2Q9H1I8 757 aaPredicted RBP17.6■□□□□ 0.41
SMARCE1-216ENST00000580419 ANTXR1Q9H6X2 564 aa17.6■□□□□ 0.41
SMARCE1-216ENST00000580419 TMOD4Q9NZQ9 345 aa17.6■□□□□ 0.41
SMARCE1-216ENST00000580419 MYH7P12883 1935 aa17.59■□□□□ 0.41
SMARCE1-216ENST00000580419 TNPO2O14787 897 aaKnown RBP17.59■□□□□ 0.41
SMARCE1-216ENST00000580419 DYNLL1P63167 89 aaKnown RBP17.59■□□□□ 0.41
SMARCE1-216ENST00000580419 IL1RAPL2Q9NP60 686 aa17.59■□□□□ 0.41
SMARCE1-216ENST00000580419 TCRBV5S4A2TA0A5A2 114 aa17.58■□□□□ 0.4
SMARCE1-216ENST00000580419 PDE6AP16499 860 aa17.58■□□□□ 0.4
SMARCE1-216ENST00000580419 USP5P45974 858 aa17.58■□□□□ 0.4
SMARCE1-216ENST00000580419 FLT3LGP49771 235 aa17.58■□□□□ 0.4
SMARCE1-216ENST00000580419 GABPAQ06546 454 aa17.58■□□□□ 0.4
SMARCE1-216ENST00000580419 SLC9C2Q5TAH2 1124 aa17.58■□□□□ 0.4
SMARCE1-216ENST00000580419 UBE2Q1Q7Z7E8 422 aa17.58■□□□□ 0.4
SMARCE1-216ENST00000580419 ANKRD13CQ8N6S4 541 aa17.58■□□□□ 0.4
SMARCE1-216ENST00000580419 CRNKL1Q9BZJ0 848 aaKnown RBP17.58■□□□□ 0.4
SMARCE1-216ENST00000580419 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.58■□□□□ 0.4
SMARCE1-216ENST00000580419 MAGEB6P1A0A0J9YX57 407 aa17.57■□□□□ 0.4
SMARCE1-216ENST00000580419 ADCY3O60266 1144 aa17.57■□□□□ 0.4
SMARCE1-216ENST00000580419 USP14P54578 494 aa17.57■□□□□ 0.4
SMARCE1-216ENST00000580419 MTMR2Q13614 643 aa17.57■□□□□ 0.4
SMARCE1-216ENST00000580419 CCDC84Q86UT8 332 aaPredicted RBP17.57■□□□□ 0.4
SMARCE1-216ENST00000580419 MIGA1Q8NAN2 632 aa17.57■□□□□ 0.4
SMARCE1-216ENST00000580419 KIAA1683Q9H0B3 1180 aa17.57■□□□□ 0.4
SMARCE1-216ENST00000580419 NAV1Q8NEY1 1877 aa17.56■□□□□ 0.4
SMARCE1-216ENST00000580419 XRCC5P13010 732 aaKnown RBP17.56■□□□□ 0.4
SMARCE1-216ENST00000580419 CCL5P13501 91 aa17.56■□□□□ 0.4
SMARCE1-216ENST00000580419 IRX3P78415 501 aaPredicted RBP17.56■□□□□ 0.4
SMARCE1-216ENST00000580419 JAG1P78504 1218 aa17.56■□□□□ 0.4
SMARCE1-216ENST00000580419 USP17L2Q6R6M4 530 aa17.56■□□□□ 0.4
SMARCE1-216ENST00000580419 LBX2Q6XYB7 198 aa17.56■□□□□ 0.4
SMARCE1-216ENST00000580419 HAUS7Q99871 368 aa17.56■□□□□ 0.4
SMARCE1-216ENST00000580419 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.56■□□□□ 0.4
SMARCE1-216ENST00000580419 GABRQQ9UN88 632 aa17.56■□□□□ 0.4
SMARCE1-216ENST00000580419 MTFR1Q15390 333 aa17.55■□□□□ 0.4
SMARCE1-216ENST00000580419 CERKLQ49MI3 558 aaPredicted RBP17.55■□□□□ 0.4
SMARCE1-216ENST00000580419 SHISA4Q96DD7 197 aa17.55■□□□□ 0.4
SMARCE1-216ENST00000580419 LRRCC1Q9C099 1032 aa17.55■□□□□ 0.4
SMARCE1-216ENST00000580419 PAK6Q9NQU5 681 aaPredicted RBP17.55■□□□□ 0.4
SMARCE1-216ENST00000580419 ATP8A2Q9NTI2 1148 aa17.55■□□□□ 0.4
SMARCE1-216ENST00000580419 PAG1Q9NWQ8 432 aa17.55■□□□□ 0.4
SMARCE1-216ENST00000580419 PCDH10Q9P2E7 1040 aa17.55■□□□□ 0.4
SMARCE1-216ENST00000580419 SAP30BPQ9UHR5 308 aaKnown RBP17.55■□□□□ 0.4
SMARCE1-216ENST00000580419 GJD2Q9UKL4 321 aa17.55■□□□□ 0.4
SMARCE1-216ENST00000580419 GH2P01242 217 aa17.54■□□□□ 0.4
SMARCE1-216ENST00000580419 MAPK4P31152 587 aa17.54■□□□□ 0.4
SMARCE1-216ENST00000580419 ADD2P35612 726 aa17.54■□□□□ 0.4
SMARCE1-216ENST00000580419 HERVK_113P62684 666 aa17.54■□□□□ 0.4
SMARCE1-216ENST00000580419 UBE3CQ15386 1083 aa17.54■□□□□ 0.4
SMARCE1-216ENST00000580419 TRMT44Q8IYL2 757 aaKnown RBP17.54■□□□□ 0.4
SMARCE1-216ENST00000580419 GPRC5AQ8NFJ5 357 aa17.54■□□□□ 0.4
SMARCE1-216ENST00000580419 SOCS4Q8WXH5 440 aa17.54■□□□□ 0.4
SMARCE1-216ENST00000580419 RNF208Q9H0X6 261 aa17.54■□□□□ 0.4
SMARCE1-216ENST00000580419 EMILIN3Q9NT22 766 aa17.54■□□□□ 0.4
SMARCE1-216ENST00000580419 SWAP70Q9UH65 585 aa17.54■□□□□ 0.4
SMARCE1-216ENST00000580419 NDUFB9Q9Y6M9 179 aa17.54■□□□□ 0.4
SMARCE1-216ENST00000580419 MYH8P13535 1937 aa17.54■□□□□ 0.4
SMARCE1-216ENST00000580419 PLXNB2O15031 1838 aa17.54■□□□□ 0.4
SMARCE1-216ENST00000580419 ZNF532Q9HCE3 1301 aa17.53■□□□□ 0.4
SMARCE1-216ENST00000580419 GOLIM4O00461 696 aa17.53■□□□□ 0.4
SMARCE1-216ENST00000580419 SGPL1O95470 568 aa17.53■□□□□ 0.4
SMARCE1-216ENST00000580419 SHMT1P34896 483 aa17.53■□□□□ 0.4
SMARCE1-216ENST00000580419 PLCD1P51178 756 aa17.53■□□□□ 0.4
SMARCE1-216ENST00000580419 ABCB5Q2M3G0 1257 aa17.53■□□□□ 0.4
SMARCE1-216ENST00000580419 ZSCAN25Q6NSZ9 544 aa17.53■□□□□ 0.4
SMARCE1-216ENST00000580419 P2RX7Q99572 595 aaKnown RBP17.53■□□□□ 0.4
SMARCE1-216ENST00000580419 CRISPLD2Q9H0B8 497 aa17.53■□□□□ 0.4
SMARCE1-216ENST00000580419 CABP5Q9NP86 173 aa17.53■□□□□ 0.4
SMARCE1-216ENST00000580419 DCP1AQ9NPI6 582 aaPredicted RBP17.53■□□□□ 0.4
SMARCE1-216ENST00000580419 BIN2Q9UBW5 565 aaPredicted RBP17.53■□□□□ 0.4
SMARCE1-216ENST00000580419 USP17L15C9J2P7 530 aa17.52■□□□□ 0.4
SMARCE1-216ENST00000580419 USP17L13C9JLJ4 530 aa17.52■□□□□ 0.4
SMARCE1-216ENST00000580419 USP17L11C9JVI0 530 aa17.52■□□□□ 0.4
SMARCE1-216ENST00000580419 USP17L18D6R9N7 530 aa17.52■□□□□ 0.4
SMARCE1-216ENST00000580419 USP17L22D6RA61 530 aa17.52■□□□□ 0.4
SMARCE1-216ENST00000580419 USP17L17D6RBQ6 530 aa17.52■□□□□ 0.4
SMARCE1-216ENST00000580419 USP17L19D6RCP7 530 aa17.52■□□□□ 0.4
SMARCE1-216ENST00000580419 USP17L20D6RJB6 530 aa17.52■□□□□ 0.4
SMARCE1-216ENST00000580419 GDF11O95390 407 aa17.52■□□□□ 0.4
SMARCE1-216ENST00000580419 HMGCRP04035 888 aa17.52■□□□□ 0.4
SMARCE1-216ENST00000580419 USP17L24Q0WX57 530 aa17.52■□□□□ 0.4
SMARCE1-216ENST00000580419 U2AF1L4Q8WU68 220 aaKnown RBP17.52■□□□□ 0.4
SMARCE1-216ENST00000580419 DCTPP1Q9H773 170 aa17.52■□□□□ 0.4
SMARCE1-216ENST00000580419 RABGAP1Q9Y3P9 1069 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms