RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 KIAA1211Q6ZU35 1233 aa12.18□□□□□ -0.46
SS18-207ENST00000577636 ATG9AQ7Z3C6 839 aa12.18□□□□□ -0.46
SS18-207ENST00000577636 DZIP1Q86YF9 867 aaKnown RBP12.18□□□□□ -0.46
SS18-207ENST00000577636 A0A1W2PPC1 479 aa12.17□□□□□ -0.46
SS18-207ENST00000577636 FAM196BA6NMK8 535 aa12.17□□□□□ -0.46
SS18-207ENST00000577636 CTNND1O60716 968 aaKnown RBP12.17□□□□□ -0.46
SS18-207ENST00000577636 ENTPD3O75355 529 aa12.17□□□□□ -0.46
SS18-207ENST00000577636 ATP5JP18859 108 aa12.17□□□□□ -0.46
SS18-207ENST00000577636 CHMLP26374 656 aa12.17□□□□□ -0.46
SS18-207ENST00000577636 IRF5Q13568 498 aa12.17□□□□□ -0.46
SS18-207ENST00000577636 TREML2Q5T2D2 321 aa12.17□□□□□ -0.46
SS18-207ENST00000577636 Q7L0L9 218 aa12.17□□□□□ -0.46
SS18-207ENST00000577636 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.17□□□□□ -0.46
SS18-207ENST00000577636 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.17□□□□□ -0.46
SS18-207ENST00000577636 DDX4Q9NQI0 724 aaKnown RBP12.17□□□□□ -0.46
SS18-207ENST00000577636 PAK6Q9NQU5 681 aaPredicted RBP12.17□□□□□ -0.46
SS18-207ENST00000577636 AGTPBP1Q9UPW5 1226 aa12.17□□□□□ -0.46
SS18-207ENST00000577636 EPB41L2O43491 1005 aaKnown RBP12.16□□□□□ -0.46
SS18-207ENST00000577636 MAP4K4O95819 1239 aaPredicted RBP12.16□□□□□ -0.46
SS18-207ENST00000577636 ADORA1P30542 326 aa12.16□□□□□ -0.46
SS18-207ENST00000577636 BTDP43251 543 aa12.16□□□□□ -0.46
SS18-207ENST00000577636 TRIM32Q13049 653 aa12.16□□□□□ -0.46
SS18-207ENST00000577636 SPP2Q13103 211 aa12.16□□□□□ -0.46
SS18-207ENST00000577636 LRRFIP1Q32MZ4 808 aaKnown RBP12.16□□□□□ -0.46
SS18-207ENST00000577636 CCDC158Q5M9N0 1113 aa12.16□□□□□ -0.46
SS18-207ENST00000577636 DEFB123Q8N688 67 aa12.16□□□□□ -0.46
SS18-207ENST00000577636 ESYT1Q9BSJ8 1104 aa12.16□□□□□ -0.46
SS18-207ENST00000577636 IDI2Q9BXS1 227 aa12.16□□□□□ -0.46
SS18-207ENST00000577636 PNMA3Q9UL41 463 aa12.16□□□□□ -0.46
SS18-207ENST00000577636 SLC45A1Q9Y2W3 748 aa12.16□□□□□ -0.46
SS18-207ENST00000577636 TIMM10P62072 90 aa12.15□□□□□ -0.46
SS18-207ENST00000577636 CCDC102BQ68D86 513 aa12.15□□□□□ -0.46
SS18-207ENST00000577636 SLF2Q8IX21 1173 aa12.15□□□□□ -0.46
SS18-207ENST00000577636 ZGPATQ8N5A5 531 aaKnown RBP12.15□□□□□ -0.46
SS18-207ENST00000577636 FSD1Q9BTV5 496 aa12.15□□□□□ -0.46
SS18-207ENST00000577636 CRISPLD2Q9H0B8 497 aa12.15□□□□□ -0.46
SS18-207ENST00000577636 HMX1Q9NP08 348 aaPredicted RBP12.15□□□□□ -0.46
SS18-207ENST00000577636 DBNLQ9UJU6 430 aaKnown RBP12.15□□□□□ -0.46
SS18-207ENST00000577636 A0A1B0GUL7 405 aa12.14□□□□□ -0.47
SS18-207ENST00000577636 CAPN2P17655 700 aa12.14□□□□□ -0.47
SS18-207ENST00000577636 CYP2B6P20813 491 aa12.14□□□□□ -0.47
SS18-207ENST00000577636 TTC39AQ5SRH9 613 aa12.14□□□□□ -0.47
SS18-207ENST00000577636 TICAM2Q86XR7 235 aa12.14□□□□□ -0.47
SS18-207ENST00000577636 HSCBQ8IWL3 235 aa12.14□□□□□ -0.47
SS18-207ENST00000577636 GDF15Q99988 308 aa12.14□□□□□ -0.47
SS18-207ENST00000577636 DBNDD2Q9BQY9 259 aa12.14□□□□□ -0.47
SS18-207ENST00000577636 NBPF3Q9H094 633 aa12.14□□□□□ -0.47
SS18-207ENST00000577636 BOLA2Q9H3K6 86 aa12.14□□□□□ -0.47
SS18-207ENST00000577636 C11orf49Q9H6J7 331 aa12.14□□□□□ -0.47
SS18-207ENST00000577636 ANO2Q9NQ90 1003 aa12.14□□□□□ -0.47
SS18-207ENST00000577636 TLR7Q9NYK1 1049 aaKnown RBP12.14□□□□□ -0.47
SS18-207ENST00000577636 ATRNL1Q5VV63 1379 aa12.14□□□□□ -0.47
SS18-207ENST00000577636 RPTORQ8N122 1335 aa12.13□□□□□ -0.47
SS18-207ENST00000577636 SALL1Q9NSC2 1324 aa12.13□□□□□ -0.47
SS18-207ENST00000577636 SEMA3EO15041 775 aa12.13□□□□□ -0.47
SS18-207ENST00000577636 HMGCRP04035 888 aa12.13□□□□□ -0.47
SS18-207ENST00000577636 BMP8BP34820 402 aa12.13□□□□□ -0.47
SS18-207ENST00000577636 MAGEA10P43363 369 aaPredicted RBP12.13□□□□□ -0.47
SS18-207ENST00000577636 HMGCS2P54868 508 aa12.13□□□□□ -0.47
SS18-207ENST00000577636 MAP3K10Q02779 954 aa12.13□□□□□ -0.47
SS18-207ENST00000577636 FAM110CQ1W6H9 321 aa12.13□□□□□ -0.47
SS18-207ENST00000577636 SPTY2D1Q68D10 685 aaPredicted RBP12.13□□□□□ -0.47
SS18-207ENST00000577636 ZNF280CQ8ND82 737 aa12.13□□□□□ -0.47
SS18-207ENST00000577636 USP26Q9BXU7 913 aa12.13□□□□□ -0.47
SS18-207ENST00000577636 GAKO14976 1311 aa12.12□□□□□ -0.47
SS18-207ENST00000577636 MGAMO43451 1857 aa12.12□□□□□ -0.47
SS18-207ENST00000577636 PEX10O60683 326 aa12.12□□□□□ -0.47
SS18-207ENST00000577636 GCLCP48506 637 aaPredicted RBP12.12□□□□□ -0.47
SS18-207ENST00000577636 MECOMQ03112 1051 aa12.12□□□□□ -0.47
SS18-207ENST00000577636 PABPC4Q13310 644 aaKnown RBP eCLIP12.12□□□□□ -0.47
SS18-207ENST00000577636 RASGRF1Q13972 1273 aa12.12□□□□□ -0.47
SS18-207ENST00000577636 RABEP1Q15276 862 aa12.12□□□□□ -0.47
SS18-207ENST00000577636 PROCA1Q8NCQ7 364 aaPredicted RBP12.12□□□□□ -0.47
SS18-207ENST00000577636 IL27Q8NEV9 243 aa12.12□□□□□ -0.47
SS18-207ENST00000577636 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.12□□□□□ -0.47
SS18-207ENST00000577636 DNAJC2Q99543 621 aaKnown RBP12.12□□□□□ -0.47
SS18-207ENST00000577636 UBE2OQ9C0C9 1292 aaKnown RBP12.12□□□□□ -0.47
SS18-207ENST00000577636 ASCC2Q9H1I8 757 aaPredicted RBP12.12□□□□□ -0.47
SS18-207ENST00000577636 GJD2Q9UKL4 321 aa12.12□□□□□ -0.47
SS18-207ENST00000577636 RANBP2P49792 3224 aaKnown RBP12.12□□□□□ -0.47
SS18-207ENST00000577636 MROH7-TTC4A0A0A0MT08 1334 aa12.11□□□□□ -0.47
SS18-207ENST00000577636 RAD50Q92878 1312 aa12.11□□□□□ -0.47
SS18-207ENST00000577636 RFX7Q2KHR2 1363 aa12.11□□□□□ -0.47
SS18-207ENST00000577636 SGSM2O43147 1006 aa12.11□□□□□ -0.47
SS18-207ENST00000577636 MNX1P50219 401 aaPredicted RBP12.11□□□□□ -0.47
SS18-207ENST00000577636 IRX3P78415 501 aaPredicted RBP12.11□□□□□ -0.47
SS18-207ENST00000577636 CWC27Q6UX04 472 aaKnown RBP12.11□□□□□ -0.47
SS18-207ENST00000577636 ANKLE1Q8NAG6 615 aa12.11□□□□□ -0.47
SS18-207ENST00000577636 FAM163AQ96GL9 167 aaPredicted RBP12.11□□□□□ -0.47
SS18-207ENST00000577636 HAUS7Q99871 368 aa12.11□□□□□ -0.47
SS18-207ENST00000577636 OSBPL5Q9H0X9 879 aaPredicted RBP12.11□□□□□ -0.47
SS18-207ENST00000577636 GPR75-ASB3A0A0A6YYF3 556 aa12.1□□□□□ -0.47
SS18-207ENST00000577636 USP17L5A8MUK1 530 aa12.1□□□□□ -0.47
SS18-207ENST00000577636 TBC1D12O60347 775 aa12.1□□□□□ -0.47
SS18-207ENST00000577636 CAP2P40123 477 aa12.1□□□□□ -0.47
SS18-207ENST00000577636 RHBDL3P58872 404 aa12.1□□□□□ -0.47
SS18-207ENST00000577636 ANAPC15P60006 121 aa12.1□□□□□ -0.47
SS18-207ENST00000577636 CCAR1Q8IX12 1150 aaKnown RBP12.1□□□□□ -0.47
SS18-207ENST00000577636 TDHQ8IZJ6 230 aa12.1□□□□□ -0.47
SS18-207ENST00000577636 TRIB2Q92519 343 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms