RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 TOM1O60784 492 aa11.6□□□□□ -0.55
VPS53-220ENST00000576149 PTPREP23469 700 aa11.6□□□□□ -0.55
VPS53-220ENST00000576149 TPM4P67936 248 aa11.6□□□□□ -0.55
VPS53-220ENST00000576149 CHAF1AQ13111 956 aaPredicted RBP11.6□□□□□ -0.55
VPS53-220ENST00000576149 NBPF5PQ86XG9 351 aaPredicted RBP11.6□□□□□ -0.55
VPS53-220ENST00000576149 IMPACTQ9P2X3 320 aa11.6□□□□□ -0.55
VPS53-220ENST00000576149 FBXO2Q9UK22 296 aaPredicted RBP11.6□□□□□ -0.55
VPS53-220ENST00000576149 ZPR1O75312 459 aa11.59□□□□□ -0.55
VPS53-220ENST00000576149 HIBADHP31937 336 aaKnown RBP11.59□□□□□ -0.55
VPS53-220ENST00000576149 MECOMQ03112 1051 aa11.59□□□□□ -0.55
VPS53-220ENST00000576149 FUT2Q10981 343 aa11.59□□□□□ -0.55
VPS53-220ENST00000576149 NR5A1Q13285 461 aa11.59□□□□□ -0.55
VPS53-220ENST00000576149 PNOCQ13519 176 aa11.59□□□□□ -0.55
VPS53-220ENST00000576149 METTL16Q86W50 562 aaKnown RBP11.59□□□□□ -0.55
VPS53-220ENST00000576149 IQCA1Q86XH1 822 aa11.59□□□□□ -0.55
VPS53-220ENST00000576149 NGLY1Q96IV0 654 aa11.59□□□□□ -0.55
VPS53-220ENST00000576149 OSBPL5Q9H0X9 879 aaPredicted RBP11.59□□□□□ -0.55
VPS53-220ENST00000576149 COL24A1Q17RW2 1714 aa11.59□□□□□ -0.55
VPS53-220ENST00000576149 USP17L12C9JPN9 530 aa11.59□□□□□ -0.55
VPS53-220ENST00000576149 USP17L21D6R901 530 aa11.59□□□□□ -0.55
VPS53-220ENST00000576149 GSDMDP57764 484 aa11.59□□□□□ -0.55
VPS53-220ENST00000576149 IFIT1BQ5T764 474 aaKnown RBP11.59□□□□□ -0.55
VPS53-220ENST00000576149 ISM2Q6H9L7 571 aa11.59□□□□□ -0.55
VPS53-220ENST00000576149 TPTE2Q6XPS3 522 aa11.59□□□□□ -0.55
VPS53-220ENST00000576149 CATIPQ7Z7H3 387 aa11.59□□□□□ -0.55
VPS53-220ENST00000576149 ZNF579Q8NAF0 562 aaKnown RBP11.59□□□□□ -0.55
VPS53-220ENST00000576149 CNNM3Q8NE01 707 aa11.59□□□□□ -0.55
VPS53-220ENST00000576149 OXER1Q8TDS5 423 aa11.59□□□□□ -0.55
VPS53-220ENST00000576149 C8orf37Q96NL8 207 aa11.59□□□□□ -0.55
VPS53-220ENST00000576149 MAP7D2Q96T17 732 aa11.59□□□□□ -0.55
VPS53-220ENST00000576149 XPO4Q9C0E2 1151 aaKnown RBP11.59□□□□□ -0.55
VPS53-220ENST00000576149 IFNKQ9P0W0 207 aa11.59□□□□□ -0.55
VPS53-220ENST00000576149 GNPATO15228 680 aa11.58□□□□□ -0.56
VPS53-220ENST00000576149 PRPF3O43395 683 aaKnown RBP11.58□□□□□ -0.56
VPS53-220ENST00000576149 PRDM1O75626 825 aa11.58□□□□□ -0.56
VPS53-220ENST00000576149 SKILP12757 684 aa11.58□□□□□ -0.56
VPS53-220ENST00000576149 CCZ1BP86790 482 aa11.58□□□□□ -0.56
VPS53-220ENST00000576149 CCZ1P86791 482 aaPredicted RBP11.58□□□□□ -0.56
VPS53-220ENST00000576149 MDM2Q00987 491 aaPredicted RBP11.58□□□□□ -0.56
VPS53-220ENST00000576149 AKAP17AQ02040 695 aaKnown RBP11.58□□□□□ -0.56
VPS53-220ENST00000576149 TROAPQ12815 778 aa11.58□□□□□ -0.56
VPS53-220ENST00000576149 PKN1Q16512 942 aa11.58□□□□□ -0.56
VPS53-220ENST00000576149 FOXP4Q8IVH2 680 aaPredicted RBP11.58□□□□□ -0.56
VPS53-220ENST00000576149 CNPY4Q8N129 248 aa11.58□□□□□ -0.56
VPS53-220ENST00000576149 SHISA4Q96DD7 197 aa11.58□□□□□ -0.56
VPS53-220ENST00000576149 HSD3B7Q9H2F3 369 aa11.58□□□□□ -0.56
VPS53-220ENST00000576149 RBM28Q9NW13 759 aaKnown RBP11.58□□□□□ -0.56
VPS53-220ENST00000576149 TFCP2L1Q9NZI6 479 aa11.58□□□□□ -0.56
VPS53-220ENST00000576149 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.58□□□□□ -0.56
VPS53-220ENST00000576149 PCDHB6Q9Y5E3 794 aa11.58□□□□□ -0.56
VPS53-220ENST00000576149 SMC2O95347 1197 aa11.58□□□□□ -0.56
VPS53-220ENST00000576149 CALM1P0DP23 149 aa11.58□□□□□ -0.56
VPS53-220ENST00000576149 CALM2P0DP24 149 aa11.58□□□□□ -0.56
VPS53-220ENST00000576149 CALM3P0DP25 149 aa11.58□□□□□ -0.56
VPS53-220ENST00000576149 XBP1P17861 261 aa11.58□□□□□ -0.56
VPS53-220ENST00000576149 TM4SF1P30408 202 aa11.58□□□□□ -0.56
VPS53-220ENST00000576149 GRIN1Q05586 938 aa11.58□□□□□ -0.56
VPS53-220ENST00000576149 C16orf45Q96MC5 204 aaPredicted RBP11.58□□□□□ -0.56
VPS53-220ENST00000576149 CRNKL1Q9BZJ0 848 aaKnown RBP11.58□□□□□ -0.56
VPS53-220ENST00000576149 DCP1AQ9NPI6 582 aaPredicted RBP11.58□□□□□ -0.56
VPS53-220ENST00000576149 CEP131Q9UPN4 1083 aa11.58□□□□□ -0.56
VPS53-220ENST00000576149 SRPRBQ9Y5M8 271 aaKnown RBP11.58□□□□□ -0.56
VPS53-220ENST00000576149 RIOK3O14730 519 aaKnown RBP11.57□□□□□ -0.56
VPS53-220ENST00000576149 ORC4O43929 436 aa11.57□□□□□ -0.56
VPS53-220ENST00000576149 TPD52L1Q16890 204 aaPredicted RBP11.57□□□□□ -0.56
VPS53-220ENST00000576149 SPECC1Q5M775 1068 aa11.57□□□□□ -0.56
VPS53-220ENST00000576149 MTERF4Q7Z6M4 381 aaKnown RBP11.57□□□□□ -0.56
VPS53-220ENST00000576149 FNBP4Q8N3X1 1017 aaPredicted RBP11.57□□□□□ -0.56
VPS53-220ENST00000576149 PHF20Q9BVI0 1012 aa11.57□□□□□ -0.56
VPS53-220ENST00000576149 CABP5Q9NP86 173 aa11.57□□□□□ -0.56
VPS53-220ENST00000576149 ATP8A2Q9NTI2 1148 aa11.57□□□□□ -0.56
VPS53-220ENST00000576149 AATFQ9NY61 560 aaKnown RBP eCLIP11.57□□□□□ -0.56
VPS53-220ENST00000576149 RTCBQ9Y3I0 505 aaKnown RBP11.57□□□□□ -0.56
VPS53-220ENST00000576149 PCDHA5Q9Y5H7 936 aa11.57□□□□□ -0.56
VPS53-220ENST00000576149 MORC2Q9Y6X9 1032 aaPredicted RBP11.57□□□□□ -0.56
VPS53-220ENST00000576149 BAZ2AQ9UIF9 1905 aaKnown RBP11.57□□□□□ -0.56
VPS53-220ENST00000576149 DDAH1O94760 285 aa11.57□□□□□ -0.56
VPS53-220ENST00000576149 PLEKHA8P1O95397 391 aa11.57□□□□□ -0.56
VPS53-220ENST00000576149 TNNT1P13805 278 aa11.57□□□□□ -0.56
VPS53-220ENST00000576149 PRDX5P30044 214 aa11.57□□□□□ -0.56
VPS53-220ENST00000576149 MYL5Q02045 173 aa11.57□□□□□ -0.56
VPS53-220ENST00000576149 CERS3Q8IU89 383 aa11.57□□□□□ -0.56
VPS53-220ENST00000576149 CCDC24Q8N4L8 307 aa11.57□□□□□ -0.56
VPS53-220ENST00000576149 ARHGEF1Q92888 912 aaKnown RBP11.57□□□□□ -0.56
VPS53-220ENST00000576149 VPS54Q9P1Q0 977 aa11.57□□□□□ -0.56
VPS53-220ENST00000576149 HOOK1Q9UJC3 728 aaKnown RBP11.57□□□□□ -0.56
VPS53-220ENST00000576149 CCNL1Q9UK58 526 aaPredicted RBP11.57□□□□□ -0.56
VPS53-220ENST00000576149 V9GY48 417 aaPredicted RBP11.57□□□□□ -0.56
VPS53-220ENST00000576149 IRS2Q9Y4H2 1338 aa11.57□□□□□ -0.56
VPS53-220ENST00000576149 LMOD1P29536 600 aaPredicted RBP11.56□□□□□ -0.56
VPS53-220ENST00000576149 FANCCQ00597 558 aa11.56□□□□□ -0.56
VPS53-220ENST00000576149 EVX2Q03828 476 aa11.56□□□□□ -0.56
VPS53-220ENST00000576149 SBK1Q52WX2 424 aa11.56□□□□□ -0.56
VPS53-220ENST00000576149 OLFM4Q6UX06 510 aa11.56□□□□□ -0.56
VPS53-220ENST00000576149 TXNRD3Q86VQ6 643 aa11.56□□□□□ -0.56
VPS53-220ENST00000576149 AMIGO3Q86WK7 504 aa11.56□□□□□ -0.56
VPS53-220ENST00000576149 KCND1Q9NSA2 647 aa11.56□□□□□ -0.56
VPS53-220ENST00000576149 MYH2Q9UKX2 1941 aa11.56□□□□□ -0.56
VPS53-220ENST00000576149 FOXN1O15353 648 aa11.56□□□□□ -0.56
VPS53-220ENST00000576149 POLR2DO15514 142 aaKnown RBP11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms