RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 INPP5BP32019 993 aa20.24■□□□□ 0.83
NUP88-210ENST00000574867 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.24■□□□□ 0.83
NUP88-210ENST00000574867 SAPCD2Q86UD0 394 aa20.24■□□□□ 0.83
NUP88-210ENST00000574867 CNNM2Q9H8M5 875 aa20.24■□□□□ 0.83
NUP88-210ENST00000574867 UBE2Q2LH0YL09 131 aa20.23■□□□□ 0.83
NUP88-210ENST00000574867 PRDM1O75626 825 aa20.23■□□□□ 0.83
NUP88-210ENST00000574867 HUNKP57058 714 aa20.23■□□□□ 0.83
NUP88-210ENST00000574867 VGLL4Q14135 290 aa20.23■□□□□ 0.83
NUP88-210ENST00000574867 ZNF444Q8N0Y2 327 aaPredicted RBP20.23■□□□□ 0.83
NUP88-210ENST00000574867 GREB1LQ9C091 1923 aaPredicted RBP20.23■□□□□ 0.83
NUP88-210ENST00000574867 SEC24BO95487 1268 aa20.23■□□□□ 0.83
NUP88-210ENST00000574867 ASNSP08243 561 aa20.23■□□□□ 0.83
NUP88-210ENST00000574867 C1QTNF8P60827 252 aa20.23■□□□□ 0.83
NUP88-210ENST00000574867 ABCB5Q2M3G0 1257 aa20.23■□□□□ 0.83
NUP88-210ENST00000574867 ZKSCAN4Q969J2 545 aaPredicted RBP20.23■□□□□ 0.83
NUP88-210ENST00000574867 CABP5Q9NP86 173 aa20.23■□□□□ 0.83
NUP88-210ENST00000574867 TOMM22Q9NS69 142 aa20.23■□□□□ 0.83
NUP88-210ENST00000574867 ABT1Q9ULW3 272 aaKnown RBP20.23■□□□□ 0.83
NUP88-210ENST00000574867 PLIN4Q96Q06 1357 aa20.23■□□□□ 0.83
NUP88-210ENST00000574867 GDF11O95390 407 aa20.22■□□□□ 0.83
NUP88-210ENST00000574867 TRDNQ13061 729 aa20.22■□□□□ 0.83
NUP88-210ENST00000574867 RRP1BQ14684 758 aaKnown RBP20.22■□□□□ 0.83
NUP88-210ENST00000574867 KCNB2Q92953 911 aa20.22■□□□□ 0.83
NUP88-210ENST00000574867 HHIPL1Q96JK4 782 aa20.22■□□□□ 0.83
NUP88-210ENST00000574867 KRT23Q9C075 422 aa20.22■□□□□ 0.83
NUP88-210ENST00000574867 PICK1Q9NRD5 415 aa20.22■□□□□ 0.83
NUP88-210ENST00000574867 ZBTB21Q9ULJ3 1066 aa20.22■□□□□ 0.83
NUP88-210ENST00000574867 SNCAIPQ9Y6H5 919 aa20.22■□□□□ 0.83
NUP88-210ENST00000574867 NEDD4P46934 1319 aa20.22■□□□□ 0.83
NUP88-210ENST00000574867 TSGA10IPQ3SY00 556 aa20.22■□□□□ 0.83
NUP88-210ENST00000574867 TMEM179Q6ZVK1 233 aa20.22■□□□□ 0.83
NUP88-210ENST00000574867 ESR2Q92731 530 aa20.22■□□□□ 0.83
NUP88-210ENST00000574867 TACC3Q9Y6A5 838 aa20.22■□□□□ 0.83
NUP88-210ENST00000574867 E7EWF7 191 aa20.21■□□□□ 0.83
NUP88-210ENST00000574867 KRT32Q14532 448 aa20.21■□□□□ 0.83
NUP88-210ENST00000574867 BACH2Q9BYV9 841 aa20.21■□□□□ 0.83
NUP88-210ENST00000574867 UPF2Q9HAU5 1272 aaKnown RBP20.21■□□□□ 0.83
NUP88-210ENST00000574867 MPHOSPH10O00566 681 aaKnown RBP20.2■□□□□ 0.82
NUP88-210ENST00000574867 GH2P01242 217 aa20.2■□□□□ 0.82
NUP88-210ENST00000574867 TSPY3P0CV98 308 aa20.2■□□□□ 0.82
NUP88-210ENST00000574867 TSPY8P0CW00 308 aa20.2■□□□□ 0.82
NUP88-210ENST00000574867 AKR1B1P15121 316 aa20.2■□□□□ 0.82
NUP88-210ENST00000574867 RRP12Q5JTH9 1297 aaKnown RBP20.2■□□□□ 0.82
NUP88-210ENST00000574867 RALYLQ86SE5 291 aaKnown RBP20.2■□□□□ 0.82
NUP88-210ENST00000574867 TSPY2A6NKD2 308 aa20.2■□□□□ 0.82
NUP88-210ENST00000574867 RANBP6O60518 1105 aaKnown RBP20.2■□□□□ 0.82
NUP88-210ENST00000574867 NCOA7Q8NI08 942 aa20.2■□□□□ 0.82
NUP88-210ENST00000574867 CLMNQ96JQ2 1002 aa20.2■□□□□ 0.82
NUP88-210ENST00000574867 TBC1D2Q9BYX2 928 aa20.2■□□□□ 0.82
NUP88-210ENST00000574867 INCENPQ9NQS7 918 aa20.2■□□□□ 0.82
NUP88-210ENST00000574867 TAF6LQ9Y6J9 622 aa20.2■□□□□ 0.82
NUP88-210ENST00000574867 ELP3Q9H9T3 547 aa20.19■□□□□ 0.82
NUP88-210ENST00000574867 SPDYE5A6NIY4 337 aa20.18■□□□□ 0.82
NUP88-210ENST00000574867 PTPRAP18433 802 aa20.18■□□□□ 0.82
NUP88-210ENST00000574867 TFAP4Q01664 338 aa20.18■□□□□ 0.82
NUP88-210ENST00000574867 STOX1Q6ZVD7 989 aa20.18■□□□□ 0.82
NUP88-210ENST00000574867 ERO1BQ86YB8 467 aa20.18■□□□□ 0.82
NUP88-210ENST00000574867 NEDD1Q8NHV4 660 aa20.18■□□□□ 0.82
NUP88-210ENST00000574867 SLC10A4Q96EP9 437 aa20.18■□□□□ 0.82
NUP88-210ENST00000574867 PHIPQ8WWQ0 1821 aa20.18■□□□□ 0.82
NUP88-210ENST00000574867 JAG1P78504 1218 aa20.18■□□□□ 0.82
NUP88-210ENST00000574867 PPP4R3BQ5MIZ7 849 aa20.18■□□□□ 0.82
NUP88-210ENST00000574867 RGMBQ6NW40 437 aa20.18■□□□□ 0.82
NUP88-210ENST00000574867 RASEFQ8IZ41 740 aa20.18■□□□□ 0.82
NUP88-210ENST00000574867 SNX14Q9Y5W7 946 aa20.18■□□□□ 0.82
NUP88-210ENST00000574867 B4E1Z4 1266 aa20.17■□□□□ 0.82
NUP88-210ENST00000574867 KDM4AO75164 1064 aa20.17■□□□□ 0.82
NUP88-210ENST00000574867 HSPA6P17066 643 aa20.17■□□□□ 0.82
NUP88-210ENST00000574867 ANAPC15P60006 121 aa20.17■□□□□ 0.82
NUP88-210ENST00000574867 PPATQ06203 517 aa20.17■□□□□ 0.82
NUP88-210ENST00000574867 RAB3GAP1Q15042 981 aa20.17■□□□□ 0.82
NUP88-210ENST00000574867 SHROOM1Q2M3G4 852 aaPredicted RBP20.17■□□□□ 0.82
NUP88-210ENST00000574867 FAM47AQ5JRC9 791 aa20.17■□□□□ 0.82
NUP88-210ENST00000574867 AS3MTQ9HBK9 375 aa20.17■□□□□ 0.82
NUP88-210ENST00000574867 RASSF10A6NK89 507 aa20.17■□□□□ 0.82
NUP88-210ENST00000574867 USP17L5A8MUK1 530 aa20.17■□□□□ 0.82
NUP88-210ENST00000574867 KANSL2Q9H9L4 492 aa20.17■□□□□ 0.82
NUP88-210ENST00000574867 ZNF157P51786 506 aaPredicted RBP20.16■□□□□ 0.82
NUP88-210ENST00000574867 OPTNQ96CV9 577 aa20.16■□□□□ 0.82
NUP88-210ENST00000574867 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.16■□□□□ 0.82
NUP88-210ENST00000574867 IGKV6D-41A0A0C4DH26 115 aa20.15■□□□□ 0.82
NUP88-210ENST00000574867 GUCY1A2P33402 732 aa20.15■□□□□ 0.82
NUP88-210ENST00000574867 ICA1Q05084 483 aa20.15■□□□□ 0.82
NUP88-210ENST00000574867 PPIL2Q13356 520 aa20.15■□□□□ 0.82
NUP88-210ENST00000574867 SEPT2Q15019 361 aa20.15■□□□□ 0.82
NUP88-210ENST00000574867 IQCA1Q86XH1 822 aa20.15■□□□□ 0.82
NUP88-210ENST00000574867 CCDC102AQ96A19 550 aa20.15■□□□□ 0.82
NUP88-210ENST00000574867 TCP11L1Q9NUJ3 509 aa20.15■□□□□ 0.82
NUP88-210ENST00000574867 HMGB1P09429 215 aaKnown RBP20.15■□□□□ 0.82
NUP88-210ENST00000574867 ZBTB48P10074 688 aaPredicted RBP20.15■□□□□ 0.82
NUP88-210ENST00000574867 CCDC178Q5BJE1 867 aa20.15■□□□□ 0.82
NUP88-210ENST00000574867 RASAL3Q86YV0 1011 aa20.15■□□□□ 0.82
NUP88-210ENST00000574867 MB21D2Q8IYB1 491 aaPredicted RBP20.15■□□□□ 0.82
NUP88-210ENST00000574867 OTUD5Q96G74 571 aa20.15■□□□□ 0.82
NUP88-210ENST00000574867 WNK4Q96J92 1243 aa20.15■□□□□ 0.82
NUP88-210ENST00000574867 NEK1Q96PY6 1258 aa20.15■□□□□ 0.82
NUP88-210ENST00000574867 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.15■□□□□ 0.82
NUP88-210ENST00000574867 ZHX2Q9Y6X8 837 aa20.15■□□□□ 0.82
NUP88-210ENST00000574867 PSMA5P28066 241 aa20.14■□□□□ 0.81
NUP88-210ENST00000574867 WDR18Q9BV38 432 aa20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 161.7 ms