RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 USP2O75604 605 aaPredicted RBP9.18□□□□□ -0.94
NUP88-205ENST00000572809 ADORA1P30542 326 aa9.18□□□□□ -0.94
NUP88-205ENST00000572809 PHKA1P46020 1223 aa9.18□□□□□ -0.94
NUP88-205ENST00000572809 TNNI2P48788 182 aa9.18□□□□□ -0.94
NUP88-205ENST00000572809 MAP3K11Q16584 847 aa9.18□□□□□ -0.94
NUP88-205ENST00000572809 MYSM1Q5VVJ2 828 aa9.18□□□□□ -0.94
NUP88-205ENST00000572809 HHIPL2Q6UWX4 724 aa9.18□□□□□ -0.94
NUP88-205ENST00000572809 PROCA1Q8NCQ7 364 aaPredicted RBP9.18□□□□□ -0.94
NUP88-205ENST00000572809 SLC10A4Q96EP9 437 aa9.18□□□□□ -0.94
NUP88-205ENST00000572809 XAGE2Q96GT9 111 aa9.18□□□□□ -0.94
NUP88-205ENST00000572809 ZDHHC15Q96MV8 337 aa9.18□□□□□ -0.94
NUP88-205ENST00000572809 TBC1D2Q9BYX2 928 aa9.18□□□□□ -0.94
NUP88-205ENST00000572809 RNF186Q9NXI6 227 aa9.18□□□□□ -0.94
NUP88-205ENST00000572809 STK17AQ9UEE5 414 aa9.18□□□□□ -0.94
NUP88-205ENST00000572809 PAPPA2Q9BXP8 1791 aa9.17□□□□□ -0.94
NUP88-205ENST00000572809 THSD7BQ9C0I4 1608 aa9.17□□□□□ -0.94
NUP88-205ENST00000572809 COL1A1P02452 1464 aaPredicted RBP9.17□□□□□ -0.94
NUP88-205ENST00000572809 UNCXA6NJT0 531 aa9.17□□□□□ -0.94
NUP88-205ENST00000572809 TRPA1O75762 1119 aa9.17□□□□□ -0.94
NUP88-205ENST00000572809 LDHBP07195 334 aaKnown RBP9.17□□□□□ -0.94
NUP88-205ENST00000572809 RLBP1P12271 317 aa9.17□□□□□ -0.94
NUP88-205ENST00000572809 MVPQ14764 893 aaKnown RBP9.17□□□□□ -0.94
NUP88-205ENST00000572809 GORABQ5T7V8 394 aa9.17□□□□□ -0.94
NUP88-205ENST00000572809 APOBEC3HQ6NTF7 200 aaKnown RBP9.17□□□□□ -0.94
NUP88-205ENST00000572809 SSH3Q8TE77 659 aa9.17□□□□□ -0.94
NUP88-205ENST00000572809 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.17□□□□□ -0.94
NUP88-205ENST00000572809 SALL1Q9NSC2 1324 aa9.16□□□□□ -0.94
NUP88-205ENST00000572809 SURF6O75683 361 aaKnown RBP9.16□□□□□ -0.94
NUP88-205ENST00000572809 AVPP01185 164 aa9.16□□□□□ -0.94
NUP88-205ENST00000572809 PRDX5P30044 214 aa9.16□□□□□ -0.94
NUP88-205ENST00000572809 IREB2P48200 963 aaKnown RBP9.16□□□□□ -0.94
NUP88-205ENST00000572809 TM4SF4P48230 202 aa9.16□□□□□ -0.94
NUP88-205ENST00000572809 CLK2P49760 499 aaKnown RBP9.16□□□□□ -0.94
NUP88-205ENST00000572809 NFX1Q12986 1120 aaKnown RBP9.16□□□□□ -0.94
NUP88-205ENST00000572809 PUS10Q3MIT2 529 aaKnown RBP9.16□□□□□ -0.94
NUP88-205ENST00000572809 ZGPATQ8N5A5 531 aaKnown RBP9.16□□□□□ -0.94
NUP88-205ENST00000572809 PANK1Q8TE04 598 aa9.16□□□□□ -0.94
NUP88-205ENST00000572809 TEPSINQ96N21 525 aa9.16□□□□□ -0.94
NUP88-205ENST00000572809 TMEM39BQ9GZU3 492 aa9.16□□□□□ -0.94
NUP88-205ENST00000572809 C1orf115Q9H7X2 142 aa9.16□□□□□ -0.94
NUP88-205ENST00000572809 SAGE1Q9NXZ1 904 aa9.16□□□□□ -0.94
NUP88-205ENST00000572809 TMOD2Q9NZR1 351 aa9.16□□□□□ -0.94
NUP88-205ENST00000572809 ECM29Q5VYK3 1845 aa9.15□□□□□ -0.94
NUP88-205ENST00000572809 CACNB3P54284 484 aa9.15□□□□□ -0.94
NUP88-205ENST00000572809 INHBEP58166 350 aa9.15□□□□□ -0.94
NUP88-205ENST00000572809 OS9Q13438 667 aaPredicted RBP9.15□□□□□ -0.94
NUP88-205ENST00000572809 RASGRF1Q13972 1273 aa9.15□□□□□ -0.94
NUP88-205ENST00000572809 FKBP1CQ5VVH2 108 aa9.15□□□□□ -0.94
NUP88-205ENST00000572809 SPTY2D1Q68D10 685 aaPredicted RBP9.15□□□□□ -0.94
NUP88-205ENST00000572809 FAM83AQ86UY5 434 aa9.15□□□□□ -0.94
NUP88-205ENST00000572809 ANKRD13AQ8IZ07 590 aa9.15□□□□□ -0.94
NUP88-205ENST00000572809 CYP4X1Q8N118 509 aa9.15□□□□□ -0.94
NUP88-205ENST00000572809 CLMNQ96JQ2 1002 aa9.15□□□□□ -0.94
NUP88-205ENST00000572809 SPSB2Q99619 263 aa9.15□□□□□ -0.94
NUP88-205ENST00000572809 GPR108Q9NPR9 543 aa9.15□□□□□ -0.94
NUP88-205ENST00000572809 TOR4AQ9NXH8 423 aa9.15□□□□□ -0.94
NUP88-205ENST00000572809 ABCF2Q9UG63 623 aa9.15□□□□□ -0.94
NUP88-205ENST00000572809 PDS5AQ29RF7 1337 aaKnown RBP9.14□□□□□ -0.95
NUP88-205ENST00000572809 DDX11L8A8MPP1 907 aa9.14□□□□□ -0.95
NUP88-205ENST00000572809 CD46P15529 392 aa9.14□□□□□ -0.95
NUP88-205ENST00000572809 SREBF2Q12772 1141 aa9.14□□□□□ -0.95
NUP88-205ENST00000572809 CCDC158Q5M9N0 1113 aa9.14□□□□□ -0.95
NUP88-205ENST00000572809 CDC42EP5Q6NZY7 148 aa9.14□□□□□ -0.95
NUP88-205ENST00000572809 FAM151AQ8WW52 585 aa9.14□□□□□ -0.95
NUP88-205ENST00000572809 SPIRE2Q8WWL2 714 aa9.14□□□□□ -0.95
NUP88-205ENST00000572809 HOOK2Q96ED9 719 aa9.14□□□□□ -0.95
NUP88-205ENST00000572809 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.14□□□□□ -0.95
NUP88-205ENST00000572809 USP40Q9NVE5 1235 aa9.14□□□□□ -0.95
NUP88-205ENST00000572809 HMG20BQ9P0W2 317 aa9.14□□□□□ -0.95
NUP88-205ENST00000572809 RCAN3Q9UKA8 241 aa9.14□□□□□ -0.95
NUP88-205ENST00000572809 NOP58Q9Y2X3 529 aaKnown RBP9.14□□□□□ -0.95
NUP88-205ENST00000572809 DAGLAQ9Y4D2 1042 aa9.14□□□□□ -0.95
NUP88-205ENST00000572809 SSC5DA1L4H1 1573 aa9.13□□□□□ -0.95
NUP88-205ENST00000572809 MANSC4A6NHS7 340 aaPredicted RBP9.13□□□□□ -0.95
NUP88-205ENST00000572809 A6NJR5 290 aa9.13□□□□□ -0.95
NUP88-205ENST00000572809 WIPF1O43516 503 aa9.13□□□□□ -0.95
NUP88-205ENST00000572809 TBC1D8O95759 1140 aa9.13□□□□□ -0.95
NUP88-205ENST00000572809 UQCRFS1P1P0C7P4 283 aa9.13□□□□□ -0.95
NUP88-205ENST00000572809 ZBTB48P10074 688 aaPredicted RBP9.13□□□□□ -0.95
NUP88-205ENST00000572809 RPIAP49247 311 aa9.13□□□□□ -0.95
NUP88-205ENST00000572809 INSM1Q01101 510 aaPredicted RBP9.13□□□□□ -0.95
NUP88-205ENST00000572809 TNNI3KQ59H18 835 aa9.13□□□□□ -0.95
NUP88-205ENST00000572809 CEP85Q6P2H3 762 aa9.13□□□□□ -0.95
NUP88-205ENST00000572809 SPATA5Q8NB90 893 aa9.13□□□□□ -0.95
NUP88-205ENST00000572809 WNK4Q96J92 1243 aa9.13□□□□□ -0.95
NUP88-205ENST00000572809 COG6Q9Y2V7 657 aa9.13□□□□□ -0.95
NUP88-205ENST00000572809 FPGT-TNNI3KV9GXZ4 949 aa9.13□□□□□ -0.95
NUP88-205ENST00000572809 ARAP2Q8WZ64 1704 aa9.13□□□□□ -0.95
NUP88-205ENST00000572809 AKAP11Q9UKA4 1901 aa9.12□□□□□ -0.95
NUP88-205ENST00000572809 CD2BP2O95400 341 aaKnown RBP9.12□□□□□ -0.95
NUP88-205ENST00000572809 LDHCP07864 332 aa9.12□□□□□ -0.95
NUP88-205ENST00000572809 ARID4AP29374 1257 aaPredicted RBP9.12□□□□□ -0.95
NUP88-205ENST00000572809 MECOMQ03112 1051 aa9.12□□□□□ -0.95
NUP88-205ENST00000572809 TCP10Q12799 353 aa9.12□□□□□ -0.95
NUP88-205ENST00000572809 CTC1Q2NKJ3 1217 aa9.12□□□□□ -0.95
NUP88-205ENST00000572809 TMEM259Q4ZIN3 620 aa9.12□□□□□ -0.95
NUP88-205ENST00000572809 TTC39AQ5SRH9 613 aa9.12□□□□□ -0.95
NUP88-205ENST00000572809 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.12□□□□□ -0.95
NUP88-205ENST00000572809 TBC1D9Q6ZT07 1266 aa9.12□□□□□ -0.95
NUP88-205ENST00000572809 DZIP1Q86YF9 867 aaKnown RBP9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms