RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 ZFPM1Q8IX07 1006 aa9.84□□□□□ -0.83
VPS53-214ENST00000572607 ZNF384Q8TF68 577 aa9.84□□□□□ -0.83
VPS53-214ENST00000572607 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.84□□□□□ -0.83
VPS53-214ENST00000572607 ZKSCAN4Q969J2 545 aaPredicted RBP9.84□□□□□ -0.83
VPS53-214ENST00000572607 SLC4A5Q9BY07 1137 aa9.84□□□□□ -0.83
VPS53-214ENST00000572607 TRIM34Q9BYJ4 488 aa9.84□□□□□ -0.83
VPS53-214ENST00000572607 OSBPL5Q9H0X9 879 aaPredicted RBP9.84□□□□□ -0.83
VPS53-214ENST00000572607 PIH1D3Q9NQM4 214 aaKnown RBP9.84□□□□□ -0.83
VPS53-214ENST00000572607 PICK1Q9NRD5 415 aa9.84□□□□□ -0.83
VPS53-214ENST00000572607 SNCAIPQ9Y6H5 919 aa9.84□□□□□ -0.83
VPS53-214ENST00000572607 RFX7Q2KHR2 1363 aa9.84□□□□□ -0.83
VPS53-214ENST00000572607 CETPP11597 493 aa9.83□□□□□ -0.84
VPS53-214ENST00000572607 INPP5BP32019 993 aa9.83□□□□□ -0.84
VPS53-214ENST00000572607 GJA5P36382 358 aa9.83□□□□□ -0.84
VPS53-214ENST00000572607 PPIL2Q13356 520 aa9.83□□□□□ -0.84
VPS53-214ENST00000572607 SNAPC2Q13487 334 aa9.83□□□□□ -0.84
VPS53-214ENST00000572607 FBXO46Q6PJ61 603 aaPredicted RBP9.83□□□□□ -0.84
VPS53-214ENST00000572607 MAGEB6Q8N7X4 407 aa9.83□□□□□ -0.84
VPS53-214ENST00000572607 ZNF454Q8N9F8 522 aa9.83□□□□□ -0.84
VPS53-214ENST00000572607 SH3RF3Q8TEJ3 882 aaPredicted RBP9.83□□□□□ -0.84
VPS53-214ENST00000572607 GPATCH3Q96I76 525 aa9.83□□□□□ -0.84
VPS53-214ENST00000572607 DNAJC2Q99543 621 aaKnown RBP9.83□□□□□ -0.84
VPS53-214ENST00000572607 DHX36Q9H2U1 1008 aaKnown RBP9.83□□□□□ -0.84
VPS53-214ENST00000572607 DDX4Q9NQI0 724 aaKnown RBP9.83□□□□□ -0.84
VPS53-214ENST00000572607 ZNF112Q9UJU3 913 aa9.83□□□□□ -0.84
VPS53-214ENST00000572607 VPS9D1Q9Y2B5 631 aa9.83□□□□□ -0.84
VPS53-214ENST00000572607 TESPA1A2RU30 521 aaPredicted RBP9.82□□□□□ -0.84
VPS53-214ENST00000572607 DDTLA6NHG4 134 aaPredicted RBP9.82□□□□□ -0.84
VPS53-214ENST00000572607 IGF2BP3O00425 579 aaKnown RBP eCLIP9.82□□□□□ -0.84
VPS53-214ENST00000572607 GOLIM4O00461 696 aa9.82□□□□□ -0.84
VPS53-214ENST00000572607 GTPBP6O43824 516 aaPredicted RBP9.82□□□□□ -0.84
VPS53-214ENST00000572607 FKTNO75072 461 aa9.82□□□□□ -0.84
VPS53-214ENST00000572607 HLA-DOAP06340 250 aa9.82□□□□□ -0.84
VPS53-214ENST00000572607 USP5P45974 858 aa9.82□□□□□ -0.84
VPS53-214ENST00000572607 FOSBP53539 338 aa9.82□□□□□ -0.84
VPS53-214ENST00000572607 PPP4CP60510 307 aa9.82□□□□□ -0.84
VPS53-214ENST00000572607 NOL9Q5SY16 702 aaKnown RBP9.82□□□□□ -0.84
VPS53-214ENST00000572607 MAPKAPK5Q8IW41 473 aa9.82□□□□□ -0.84
VPS53-214ENST00000572607 KCTD12Q96CX2 325 aaKnown RBP9.82□□□□□ -0.84
VPS53-214ENST00000572607 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.82□□□□□ -0.84
VPS53-214ENST00000572607 NDUFB9Q9Y6M9 179 aa9.82□□□□□ -0.84
VPS53-214ENST00000572607 COL2A1P02458 1487 aaPredicted RBP9.82□□□□□ -0.84
VPS53-214ENST00000572607 MAST2Q6P0Q8 1798 aa9.82□□□□□ -0.84
VPS53-214ENST00000572607 MYH2Q9UKX2 1941 aa9.82□□□□□ -0.84
VPS53-214ENST00000572607 ZSWIM8A7E2V4 1837 aa9.82□□□□□ -0.84
VPS53-214ENST00000572607 ATRNL1Q5VV63 1379 aa9.81□□□□□ -0.84
VPS53-214ENST00000572607 IRF6O14896 467 aa9.81□□□□□ -0.84
VPS53-214ENST00000572607 CTNND1O60716 968 aaKnown RBP9.81□□□□□ -0.84
VPS53-214ENST00000572607 ATP5JP18859 108 aa9.81□□□□□ -0.84
VPS53-214ENST00000572607 TAF1CQ15572 869 aaPredicted RBP9.81□□□□□ -0.84
VPS53-214ENST00000572607 HABP4Q5JVS0 413 aaKnown RBP9.81□□□□□ -0.84
VPS53-214ENST00000572607 SH3BP5LQ7L8J4 393 aa9.81□□□□□ -0.84
VPS53-214ENST00000572607 ADGRA1Q86SQ6 560 aa9.81□□□□□ -0.84
VPS53-214ENST00000572607 SCYL3Q8IZE3 742 aa9.81□□□□□ -0.84
VPS53-214ENST00000572607 CRACR2BQ8N4Y2 399 aaPredicted RBP9.81□□□□□ -0.84
VPS53-214ENST00000572607 MIGA1Q8NAN2 632 aa9.81□□□□□ -0.84
VPS53-214ENST00000572607 TGFBRAP1Q8WUH2 860 aa9.81□□□□□ -0.84
VPS53-214ENST00000572607 BRI3BPQ8WY22 251 aa9.81□□□□□ -0.84
VPS53-214ENST00000572607 CRBNQ96SW2 442 aa9.81□□□□□ -0.84
VPS53-214ENST00000572607 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.81□□□□□ -0.84
VPS53-214ENST00000572607 BOLA2Q9H3K6 86 aa9.81□□□□□ -0.84
VPS53-214ENST00000572607 ANTXR1Q9H6X2 564 aa9.81□□□□□ -0.84
VPS53-214ENST00000572607 DCTPP1Q9H773 170 aa9.81□□□□□ -0.84
VPS53-214ENST00000572607 ZFYVE28Q9HCC9 887 aa9.81□□□□□ -0.84
VPS53-214ENST00000572607 PI4KBQ9UBF8 816 aa9.81□□□□□ -0.84
VPS53-214ENST00000572607 HERC5Q9UII4 1024 aaKnown RBP9.81□□□□□ -0.84
VPS53-214ENST00000572607 FLT1P17948 1338 aa9.81□□□□□ -0.84
VPS53-214ENST00000572607 MAGEB6P1A0A0J9YX57 407 aa9.8□□□□□ -0.84
VPS53-214ENST00000572607 SMARCA5O60264 1052 aaPredicted RBP9.8□□□□□ -0.84
VPS53-214ENST00000572607 DYNLL1P63167 89 aaKnown RBP9.8□□□□□ -0.84
VPS53-214ENST00000572607 CRHR2Q13324 411 aa9.8□□□□□ -0.84
VPS53-214ENST00000572607 AAMPQ13685 434 aa9.8□□□□□ -0.84
VPS53-214ENST00000572607 SLC9C2Q5TAH2 1124 aa9.8□□□□□ -0.84
VPS53-214ENST00000572607 ZSCAN25Q6NSZ9 544 aa9.8□□□□□ -0.84
VPS53-214ENST00000572607 ERO1AQ96HE7 468 aa9.8□□□□□ -0.84
VPS53-214ENST00000572607 ZCCHC17Q9NP64 241 aaKnown RBP9.8□□□□□ -0.84
VPS53-214ENST00000572607 ECHDC1Q9NTX5 307 aa9.8□□□□□ -0.84
VPS53-214ENST00000572607 PAG1Q9NWQ8 432 aa9.8□□□□□ -0.84
VPS53-214ENST00000572607 ZHX2Q9Y6X8 837 aa9.8□□□□□ -0.84
VPS53-214ENST00000572607 PHF20L1A8MW92 1017 aa9.79□□□□□ -0.84
VPS53-214ENST00000572607 CXCL11O14625 94 aa9.79□□□□□ -0.84
VPS53-214ENST00000572607 PDE6AP16499 860 aa9.79□□□□□ -0.84
VPS53-214ENST00000572607 FXR1P51114 621 aaKnown RBP eCLIP9.79□□□□□ -0.84
VPS53-214ENST00000572607 MAP3K10Q02779 954 aa9.79□□□□□ -0.84
VPS53-214ENST00000572607 ARHGEF6Q15052 776 aa9.79□□□□□ -0.84
VPS53-214ENST00000572607 FASTKD5Q7L8L6 764 aaKnown RBP9.79□□□□□ -0.84
VPS53-214ENST00000572607 FOXP4Q8IVH2 680 aaPredicted RBP9.79□□□□□ -0.84
VPS53-214ENST00000572607 HAUS7Q99871 368 aa9.79□□□□□ -0.84
VPS53-214ENST00000572607 PTPN18Q99952 460 aa9.79□□□□□ -0.84
VPS53-214ENST00000572607 TBC1D2Q9BYX2 928 aa9.79□□□□□ -0.84
VPS53-214ENST00000572607 CRNKL1Q9BZJ0 848 aaKnown RBP9.79□□□□□ -0.84
VPS53-214ENST00000572607 KCNH4Q9UQ05 1017 aa9.79□□□□□ -0.84
VPS53-214ENST00000572607 PCDHB15Q9Y5E8 787 aa9.79□□□□□ -0.84
VPS53-214ENST00000572607 ZNF532Q9HCE3 1301 aa9.79□□□□□ -0.84
VPS53-214ENST00000572607 RANBP2P49792 3224 aaKnown RBP9.78□□□□□ -0.84
VPS53-214ENST00000572607 DOCK2Q92608 1830 aa9.78□□□□□ -0.84
VPS53-214ENST00000572607 FAM196BA6NMK8 535 aa9.78□□□□□ -0.84
VPS53-214ENST00000572607 BHMG1C9JSJ3 638 aaPredicted RBP9.78□□□□□ -0.84
VPS53-214ENST00000572607 EVI5O60447 810 aa9.78□□□□□ -0.84
VPS53-214ENST00000572607 PTPRAP18433 802 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms