RNA–Protein interactions for RNA: ENST00000571545.1

CIITA-207, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 3

Gene CIITA, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-207ENST00000571545 IRX3P78415 501 aaPredicted RBP11.82□□□□□ -0.52
CIITA-207ENST00000571545 COA7Q96BR5 231 aa11.82□□□□□ -0.52
CIITA-207ENST00000571545 IL1RAPL2Q9NP60 686 aa11.82□□□□□ -0.52
CIITA-207ENST00000571545 SERPINB13Q9UIV8 391 aa11.82□□□□□ -0.52
CIITA-207ENST00000571545 DDX60LQ5H9U9 1706 aaKnown RBP11.82□□□□□ -0.52
CIITA-207ENST00000571545 MAGEB6P1A0A0J9YX57 407 aa11.81□□□□□ -0.52
CIITA-207ENST00000571545 POTEFA5A3E0 1075 aa11.81□□□□□ -0.52
CIITA-207ENST00000571545 USP17L10C9JJH3 530 aa11.81□□□□□ -0.52
CIITA-207ENST00000571545 TNPO2O14787 897 aaKnown RBP11.81□□□□□ -0.52
CIITA-207ENST00000571545 BACE1P56817 501 aa11.81□□□□□ -0.52
CIITA-207ENST00000571545 CAP1Q01518 475 aa11.81□□□□□ -0.52
CIITA-207ENST00000571545 IRF5Q13568 498 aa11.81□□□□□ -0.52
CIITA-207ENST00000571545 MIGA1Q8NAN2 632 aa11.81□□□□□ -0.52
CIITA-207ENST00000571545 PXYLP1Q8TE99 480 aa11.81□□□□□ -0.52
CIITA-207ENST00000571545 CRNKL1Q9BZJ0 848 aaKnown RBP11.81□□□□□ -0.52
CIITA-207ENST00000571545 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.81□□□□□ -0.52
CIITA-207ENST00000571545 BIN2Q9UBW5 565 aaPredicted RBP11.81□□□□□ -0.52
CIITA-207ENST00000571545 PALD1Q9ULE6 856 aa11.81□□□□□ -0.52
CIITA-207ENST00000571545 MYH7P12883 1935 aa11.8□□□□□ -0.52
CIITA-207ENST00000571545 APBB1O00213 710 aa11.8□□□□□ -0.52
CIITA-207ENST00000571545 PRKCZQ05513 592 aa11.8□□□□□ -0.52
CIITA-207ENST00000571545 MTMR2Q13614 643 aa11.8□□□□□ -0.52
CIITA-207ENST00000571545 SLC9C2Q5TAH2 1124 aa11.8□□□□□ -0.52
CIITA-207ENST00000571545 ANKRD13CQ8N6S4 541 aa11.8□□□□□ -0.52
CIITA-207ENST00000571545 SH3TC2Q8TF17 1288 aa11.8□□□□□ -0.52
CIITA-207ENST00000571545 DDRGK1Q96HY6 314 aa11.8□□□□□ -0.52
CIITA-207ENST00000571545 GPATCH3Q96I76 525 aa11.8□□□□□ -0.52
CIITA-207ENST00000571545 ZBTB21Q9ULJ3 1066 aa11.8□□□□□ -0.52
CIITA-207ENST00000571545 PDE6AP16499 860 aa11.79□□□□□ -0.52
CIITA-207ENST00000571545 HOXA7P31268 230 aaPredicted RBP11.79□□□□□ -0.52
CIITA-207ENST00000571545 USP14P54578 494 aa11.79□□□□□ -0.52
CIITA-207ENST00000571545 DYNLL1P63167 89 aaKnown RBP11.79□□□□□ -0.52
CIITA-207ENST00000571545 TREML2Q5T2D2 321 aa11.79□□□□□ -0.52
CIITA-207ENST00000571545 AMOTL1Q8IY63 956 aa11.79□□□□□ -0.52
CIITA-207ENST00000571545 DNAJC2Q99543 621 aaKnown RBP11.79□□□□□ -0.52
CIITA-207ENST00000571545 FEZ1Q99689 392 aa11.79□□□□□ -0.52
CIITA-207ENST00000571545 LRRCC1Q9C099 1032 aa11.79□□□□□ -0.52
CIITA-207ENST00000571545 ASCC2Q9H1I8 757 aaPredicted RBP11.79□□□□□ -0.52
CIITA-207ENST00000571545 ANTXR1Q9H6X2 564 aa11.79□□□□□ -0.52
CIITA-207ENST00000571545 DNAJC18Q9H819 358 aa11.79□□□□□ -0.52
CIITA-207ENST00000571545 CABP5Q9NP86 173 aa11.79□□□□□ -0.52
CIITA-207ENST00000571545 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.79□□□□□ -0.52
CIITA-207ENST00000571545 SAP30BPQ9UHR5 308 aaKnown RBP11.79□□□□□ -0.52
CIITA-207ENST00000571545 MYH8P13535 1937 aa11.78□□□□□ -0.52
CIITA-207ENST00000571545 GOLIM4O00461 696 aa11.78□□□□□ -0.52
CIITA-207ENST00000571545 GDF11O95390 407 aa11.78□□□□□ -0.52
CIITA-207ENST00000571545 POLR3DP05423 398 aaPredicted RBP11.78□□□□□ -0.52
CIITA-207ENST00000571545 GJB1P08034 283 aa11.78□□□□□ -0.52
CIITA-207ENST00000571545 SLURP2P0DP57 97 aa11.78□□□□□ -0.52
CIITA-207ENST00000571545 ATP5JP18859 108 aa11.78□□□□□ -0.52
CIITA-207ENST00000571545 EN2P19622 333 aaPredicted RBP11.78□□□□□ -0.52
CIITA-207ENST00000571545 CTGFP29279 349 aa11.78□□□□□ -0.52
CIITA-207ENST00000571545 CERKLQ49MI3 558 aaPredicted RBP11.78□□□□□ -0.52
CIITA-207ENST00000571545 ZSCAN25Q6NSZ9 544 aa11.78□□□□□ -0.52
CIITA-207ENST00000571545 TATDN1Q6P1N9 297 aa11.78□□□□□ -0.52
CIITA-207ENST00000571545 USP17L2Q6R6M4 530 aa11.78□□□□□ -0.52
CIITA-207ENST00000571545 CCDC84Q86UT8 332 aaPredicted RBP11.78□□□□□ -0.52
CIITA-207ENST00000571545 RIOK1Q9BRS2 568 aaKnown RBP11.78□□□□□ -0.52
CIITA-207ENST00000571545 PAG1Q9NWQ8 432 aa11.78□□□□□ -0.52
CIITA-207ENST00000571545 ADCY3O60266 1144 aa11.77□□□□□ -0.53
CIITA-207ENST00000571545 ECM2O94769 699 aaPredicted RBP11.77□□□□□ -0.53
CIITA-207ENST00000571545 SLC34A2O95436 690 aa11.77□□□□□ -0.53
CIITA-207ENST00000571545 GJA8P48165 433 aa11.77□□□□□ -0.53
CIITA-207ENST00000571545 FLT3LGP49771 235 aa11.77□□□□□ -0.53
CIITA-207ENST00000571545 ABCB5Q2M3G0 1257 aa11.77□□□□□ -0.53
CIITA-207ENST00000571545 CCAR1Q8IX12 1150 aaKnown RBP11.77□□□□□ -0.53
CIITA-207ENST00000571545 SIRT2Q8IXJ6 389 aa11.77□□□□□ -0.53
CIITA-207ENST00000571545 SOCS4Q8WXH5 440 aa11.77□□□□□ -0.53
CIITA-207ENST00000571545 C12orf42Q96LP6 360 aa11.77□□□□□ -0.53
CIITA-207ENST00000571545 RNF208Q9H0X6 261 aa11.77□□□□□ -0.53
CIITA-207ENST00000571545 MORF4L1Q9UBU8 362 aa11.77□□□□□ -0.53
CIITA-207ENST00000571545 SWAP70Q9UH65 585 aa11.77□□□□□ -0.53
CIITA-207ENST00000571545 NDUFB9Q9Y6M9 179 aa11.77□□□□□ -0.53
CIITA-207ENST00000571545 ZNF532Q9HCE3 1301 aa11.77□□□□□ -0.53
CIITA-207ENST00000571545 MYCP01106 439 aaPredicted RBP11.76□□□□□ -0.53
CIITA-207ENST00000571545 GH2P01242 217 aa11.76□□□□□ -0.53
CIITA-207ENST00000571545 CCL5P13501 91 aa11.76□□□□□ -0.53
CIITA-207ENST00000571545 MAPK4P31152 587 aa11.76□□□□□ -0.53
CIITA-207ENST00000571545 HERVK_113P62684 666 aa11.76□□□□□ -0.53
CIITA-207ENST00000571545 RRP1BQ14684 758 aaKnown RBP11.76□□□□□ -0.53
CIITA-207ENST00000571545 LRRFIP1Q32MZ4 808 aaKnown RBP11.76□□□□□ -0.53
CIITA-207ENST00000571545 TRMT44Q8IYL2 757 aaKnown RBP11.76□□□□□ -0.53
CIITA-207ENST00000571545 GPRC5AQ8NFJ5 357 aa11.76□□□□□ -0.53
CIITA-207ENST00000571545 HAUS7Q99871 368 aa11.76□□□□□ -0.53
CIITA-207ENST00000571545 HTATIP2Q9BUP3 242 aa11.76□□□□□ -0.53
CIITA-207ENST00000571545 KIAA1683Q9H0B3 1180 aa11.76□□□□□ -0.53
CIITA-207ENST00000571545 ATP8A2Q9NTI2 1148 aa11.76□□□□□ -0.53
CIITA-207ENST00000571545 MCM9Q9NXL9 1143 aa11.76□□□□□ -0.53
CIITA-207ENST00000571545 HMGCRP04035 888 aa11.75□□□□□ -0.53
CIITA-207ENST00000571545 ADD2P35612 726 aa11.75□□□□□ -0.53
CIITA-207ENST00000571545 CCNA1P78396 465 aa11.75□□□□□ -0.53
CIITA-207ENST00000571545 MKRN4PQ13434 485 aaPredicted RBP11.75□□□□□ -0.53
CIITA-207ENST00000571545 RAB3GAP1Q15042 981 aa11.75□□□□□ -0.53
CIITA-207ENST00000571545 UBE3CQ15386 1083 aa11.75□□□□□ -0.53
CIITA-207ENST00000571545 BOLA2Q9H3K6 86 aa11.75□□□□□ -0.53
CIITA-207ENST00000571545 SH2D4AQ9H788 454 aa11.75□□□□□ -0.53
CIITA-207ENST00000571545 GABRQQ9UN88 632 aa11.75□□□□□ -0.53
CIITA-207ENST00000571545 DOCK3Q8IZD9 2030 aa11.74□□□□□ -0.53
CIITA-207ENST00000571545 TCRBV5S4A2TA0A5A2 114 aa11.74□□□□□ -0.53
CIITA-207ENST00000571545 USP17L15C9J2P7 530 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms