RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 DYNLL2Q96FJ2 89 aa10.04□□□□□ -0.8
SF3B3-212ENST00000568539 DNAJC18Q9H819 358 aa10.04□□□□□ -0.8
SF3B3-212ENST00000568539 UPF2Q9HAU5 1272 aaKnown RBP10.04□□□□□ -0.8
SF3B3-212ENST00000568539 TACC3Q9Y6A5 838 aa10.04□□□□□ -0.8
SF3B3-212ENST00000568539 SSC5DA1L4H1 1573 aa10.03□□□□□ -0.8
SF3B3-212ENST00000568539 TBC1D12O60347 775 aa10.03□□□□□ -0.8
SF3B3-212ENST00000568539 SLC3A2P08195 630 aaKnown RBP10.03□□□□□ -0.8
SF3B3-212ENST00000568539 FGRP09769 529 aa10.03□□□□□ -0.8
SF3B3-212ENST00000568539 ZKSCAN1P17029 563 aaPredicted RBP10.03□□□□□ -0.8
SF3B3-212ENST00000568539 RBM25P49756 843 aaKnown RBP10.03□□□□□ -0.8
SF3B3-212ENST00000568539 AKNAD1Q5T1N1 836 aa10.03□□□□□ -0.8
SF3B3-212ENST00000568539 STOX1Q6ZVD7 989 aa10.03□□□□□ -0.8
SF3B3-212ENST00000568539 CRACR2BQ8N4Y2 399 aaPredicted RBP10.03□□□□□ -0.8
SF3B3-212ENST00000568539 EFCAB3Q8N7B9 438 aa10.03□□□□□ -0.8
SF3B3-212ENST00000568539 SLC44A5Q8NCS7 719 aa10.03□□□□□ -0.8
SF3B3-212ENST00000568539 STAG1Q8WVM7 1258 aa10.03□□□□□ -0.8
SF3B3-212ENST00000568539 IL17RAQ96F46 866 aa10.03□□□□□ -0.8
SF3B3-212ENST00000568539 CDCA5Q96FF9 252 aa10.03□□□□□ -0.8
SF3B3-212ENST00000568539 TBC1D32Q96NH3 1257 aa10.03□□□□□ -0.8
SF3B3-212ENST00000568539 C22orf23Q9BZE7 217 aa10.03□□□□□ -0.8
SF3B3-212ENST00000568539 INCENPQ9NQS7 918 aa10.03□□□□□ -0.8
SF3B3-212ENST00000568539 HERC5Q9UII4 1024 aaKnown RBP10.03□□□□□ -0.8
SF3B3-212ENST00000568539 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.03□□□□□ -0.8
SF3B3-212ENST00000568539 SNX14Q9Y5W7 946 aa10.03□□□□□ -0.8
SF3B3-212ENST00000568539 FAM196BA6NMK8 535 aa10.02□□□□□ -0.81
SF3B3-212ENST00000568539 E7EWF7 191 aa10.02□□□□□ -0.81
SF3B3-212ENST00000568539 TRAF5O00463 557 aa10.02□□□□□ -0.81
SF3B3-212ENST00000568539 ITGBL1O95965 494 aaPredicted RBP10.02□□□□□ -0.81
SF3B3-212ENST00000568539 PCP11498 1178 aaKnown RBP10.02□□□□□ -0.81
SF3B3-212ENST00000568539 SHMT1P34896 483 aa10.02□□□□□ -0.81
SF3B3-212ENST00000568539 CDK8P49336 464 aa10.02□□□□□ -0.81
SF3B3-212ENST00000568539 ANAPC15P60006 121 aa10.02□□□□□ -0.81
SF3B3-212ENST00000568539 PDE4BQ07343 736 aa10.02□□□□□ -0.81
SF3B3-212ENST00000568539 ADCK5Q3MIX3 580 aa10.02□□□□□ -0.81
SF3B3-212ENST00000568539 SUPT20HL1Q3ZLR7 823 aa10.02□□□□□ -0.81
SF3B3-212ENST00000568539 TATDN1Q6P1N9 297 aa10.02□□□□□ -0.81
SF3B3-212ENST00000568539 MFSD6Q6ZSS7 791 aa10.02□□□□□ -0.81
SF3B3-212ENST00000568539 MIGA2Q7L4E1 593 aa10.02□□□□□ -0.81
SF3B3-212ENST00000568539 STK11IPQ8N1F8 1099 aa10.02□□□□□ -0.81
SF3B3-212ENST00000568539 HOOK2Q96ED9 719 aa10.02□□□□□ -0.81
SF3B3-212ENST00000568539 RNF41Q9H4P4 317 aaPredicted RBP10.02□□□□□ -0.81
SF3B3-212ENST00000568539 SWAP70Q9UH65 585 aa10.02□□□□□ -0.81
SF3B3-212ENST00000568539 NEDD4P46934 1319 aa10.02□□□□□ -0.81
SF3B3-212ENST00000568539 ORC4O43929 436 aa10.01□□□□□ -0.81
SF3B3-212ENST00000568539 PRDM1O75626 825 aa10.01□□□□□ -0.81
SF3B3-212ENST00000568539 RASA1P20936 1047 aa10.01□□□□□ -0.81
SF3B3-212ENST00000568539 FMR1Q06787 632 aaKnown RBP eCLIP10.01□□□□□ -0.818e-7■□□□□ 10.3
SF3B3-212ENST00000568539 KRT32Q14532 448 aa10.01□□□□□ -0.81
SF3B3-212ENST00000568539 DCAF15Q66K64 600 aa10.01□□□□□ -0.81
SF3B3-212ENST00000568539 NKX2-3Q8TAU0 364 aa10.01□□□□□ -0.81
SF3B3-212ENST00000568539 RBM46Q8TBY0 533 aaKnown RBP10.01□□□□□ -0.81
SF3B3-212ENST00000568539 PHF12Q96QT6 1004 aa10.01□□□□□ -0.81
SF3B3-212ENST00000568539 TRIM34Q9BYJ4 488 aa10.01□□□□□ -0.81
SF3B3-212ENST00000568539 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.01□□□□□ -0.81
SF3B3-212ENST00000568539 ZNF287Q9HBT7 754 aa10.01□□□□□ -0.81
SF3B3-212ENST00000568539 NAV1Q8NEY1 1877 aa10.01□□□□□ -0.81
SF3B3-212ENST00000568539 FOCADQ5VW36 1801 aa10□□□□□ -0.81
SF3B3-212ENST00000568539 ECM29Q5VYK3 1845 aa10□□□□□ -0.81
SF3B3-212ENST00000568539 PHF20L1A8MW92 1017 aa10□□□□□ -0.81
SF3B3-212ENST00000568539 PPP1R37O75864 691 aa10□□□□□ -0.81
SF3B3-212ENST00000568539 NF2P35240 595 aa10□□□□□ -0.81
SF3B3-212ENST00000568539 NT5C2P49902 561 aa10□□□□□ -0.81
SF3B3-212ENST00000568539 COL9A3Q14050 684 aaPredicted RBP10□□□□□ -0.81
SF3B3-212ENST00000568539 RRP1BQ14684 758 aaKnown RBP10□□□□□ -0.81
SF3B3-212ENST00000568539 SMC1BQ8NDV3 1235 aa10□□□□□ -0.81
SF3B3-212ENST00000568539 NCOA7Q8NI08 942 aa10□□□□□ -0.81
SF3B3-212ENST00000568539 NEK1Q96PY6 1258 aa10□□□□□ -0.81
SF3B3-212ENST00000568539 KIF2CQ99661 725 aa10□□□□□ -0.81
SF3B3-212ENST00000568539 ZNF341Q9BYN7 854 aa10□□□□□ -0.81
SF3B3-212ENST00000568539 KRT23Q9C075 422 aa10□□□□□ -0.81
SF3B3-212ENST00000568539 CNNM2Q9H8M5 875 aa10□□□□□ -0.81
SF3B3-212ENST00000568539 MKNK2Q9HBH9 465 aa10□□□□□ -0.81
SF3B3-212ENST00000568539 ZNF112Q9UJU3 913 aa10□□□□□ -0.81
SF3B3-212ENST00000568539 C19orf67A6NJJ6 358 aa9.99□□□□□ -0.81
SF3B3-212ENST00000568539 B4E1Z4 1266 aa9.99□□□□□ -0.81
SF3B3-212ENST00000568539 KDM4AO75164 1064 aa9.99□□□□□ -0.81
SF3B3-212ENST00000568539 USP2O75604 605 aaPredicted RBP9.99□□□□□ -0.81
SF3B3-212ENST00000568539 JAG1P78504 1218 aa9.99□□□□□ -0.81
SF3B3-212ENST00000568539 TRDNQ13061 729 aa9.99□□□□□ -0.81
SF3B3-212ENST00000568539 CERKLQ49MI3 558 aaPredicted RBP9.99□□□□□ -0.81
SF3B3-212ENST00000568539 RRP12Q5JTH9 1297 aaKnown RBP9.99□□□□□ -0.81
SF3B3-212ENST00000568539 RALYLQ86SE5 291 aaKnown RBP9.99□□□□□ -0.81
SF3B3-212ENST00000568539 MB21D2Q8IYB1 491 aaPredicted RBP9.99□□□□□ -0.81
SF3B3-212ENST00000568539 ZNF444Q8N0Y2 327 aaPredicted RBP9.99□□□□□ -0.81
SF3B3-212ENST00000568539 ESR2Q92731 530 aa9.99□□□□□ -0.81
SF3B3-212ENST00000568539 CCDC17Q96LX7 622 aa9.99□□□□□ -0.81
SF3B3-212ENST00000568539 JAKMIP1Q96N16 626 aaKnown RBP9.99□□□□□ -0.81
SF3B3-212ENST00000568539 TM6SF1Q9BZW5 370 aa9.99□□□□□ -0.81
SF3B3-212ENST00000568539 TOMM22Q9NS69 142 aa9.99□□□□□ -0.81
SF3B3-212ENST00000568539 FZD1Q9UP38 647 aa9.99□□□□□ -0.81
SF3B3-212ENST00000568539 CDK5RAP2Q96SN8 1893 aa9.99□□□□□ -0.81
SF3B3-212ENST00000568539 PASKQ96RG2 1323 aa9.99□□□□□ -0.81
SF3B3-212ENST00000568539 SIPA1L1O43166 1804 aa9.98□□□□□ -0.81
SF3B3-212ENST00000568539 TSPY2A6NKD2 308 aa9.98□□□□□ -0.81
SF3B3-212ENST00000568539 PPP1R12BO60237 982 aaPredicted RBP9.98□□□□□ -0.81
SF3B3-212ENST00000568539 RANBP6O60518 1105 aaKnown RBP9.98□□□□□ -0.81
SF3B3-212ENST00000568539 HMGB1P09429 215 aaKnown RBP9.98□□□□□ -0.81
SF3B3-212ENST00000568539 AKR1B1P15121 316 aa9.98□□□□□ -0.81
SF3B3-212ENST00000568539 PSMA5P28066 241 aa9.98□□□□□ -0.81
SF3B3-212ENST00000568539 CAP2P40123 477 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms