RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 ASCC2Q9H1I8 757 aaPredicted RBP18.13■□□□□ 0.49
CLN3-222ENST00000566083 EHD4Q9H223 541 aa18.13■□□□□ 0.49
CLN3-222ENST00000566083 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.13■□□□□ 0.49
CLN3-222ENST00000566083 MGAMO43451 1857 aa18.12■□□□□ 0.49
CLN3-222ENST00000566083 RRP1BQ14684 758 aaKnown RBP18.12■□□□□ 0.49
CLN3-222ENST00000566083 SERPINB13Q9UIV8 391 aa18.12■□□□□ 0.49
CLN3-222ENST00000566083 IFIT2P09913 472 aaKnown RBP18.11■□□□□ 0.49
CLN3-222ENST00000566083 DYNLL1P63167 89 aaKnown RBP18.11■□□□□ 0.49
CLN3-222ENST00000566083 MTMR2Q13614 643 aa18.11■□□□□ 0.49
CLN3-222ENST00000566083 HTATIP2Q9BUP3 242 aa18.11■□□□□ 0.49
CLN3-222ENST00000566083 ZBTB40Q9NUA8 1239 aa18.11■□□□□ 0.49
CLN3-222ENST00000566083 TAOK2Q9UL54 1235 aa18.11■□□□□ 0.49
CLN3-222ENST00000566083 ZBTB21Q9ULJ3 1066 aa18.11■□□□□ 0.49
CLN3-222ENST00000566083 GABRQQ9UN88 632 aa18.11■□□□□ 0.49
CLN3-222ENST00000566083 ATAD5Q96QE3 1844 aa18.11■□□□□ 0.49
CLN3-222ENST00000566083 FOCADQ5VW36 1801 aa18.1■□□□□ 0.49
CLN3-222ENST00000566083 MIGA1Q8NAN2 632 aa18.1■□□□□ 0.49
CLN3-222ENST00000566083 DNAJC18Q9H819 358 aa18.1■□□□□ 0.49
CLN3-222ENST00000566083 IL1RAPL2Q9NP60 686 aa18.1■□□□□ 0.49
CLN3-222ENST00000566083 MORF4L1Q9UBU8 362 aa18.1■□□□□ 0.49
CLN3-222ENST00000566083 SAP30BPQ9UHR5 308 aaKnown RBP18.1■□□□□ 0.49
CLN3-222ENST00000566083 LOC285556D6RIA3 1793 aa18.1■□□□□ 0.49
CLN3-222ENST00000566083 TATDN1Q6P1N9 297 aa18.09■□□□□ 0.49
CLN3-222ENST00000566083 RCAN3Q9UKA8 241 aa18.09■□□□□ 0.49
CLN3-222ENST00000566083 DOCK3Q8IZD9 2030 aa18.08■□□□□ 0.49
CLN3-222ENST00000566083 USP14P54578 494 aa18.08■□□□□ 0.49
CLN3-222ENST00000566083 SLC9C2Q5TAH2 1124 aa18.08■□□□□ 0.49
CLN3-222ENST00000566083 USP17L2Q6R6M4 530 aa18.08■□□□□ 0.49
CLN3-222ENST00000566083 U2AF1L4Q8WU68 220 aaKnown RBP18.08■□□□□ 0.49
CLN3-222ENST00000566083 CRNKL1Q9BZJ0 848 aaKnown RBP18.08■□□□□ 0.49
CLN3-222ENST00000566083 ANTXR1Q9H6X2 564 aa18.08■□□□□ 0.49
CLN3-222ENST00000566083 CABP5Q9NP86 173 aa18.08■□□□□ 0.49
CLN3-222ENST00000566083 COG6Q9Y2V7 657 aa18.08■□□□□ 0.49
CLN3-222ENST00000566083 MYO5AQ9Y4I1 1855 aaKnown RBP18.08■□□□□ 0.49
CLN3-222ENST00000566083 MKI67P46013 3256 aaKnown RBP18.08■□□□□ 0.49
CLN3-222ENST00000566083 CDK5RAP2Q96SN8 1893 aa18.08■□□□□ 0.48
CLN3-222ENST00000566083 MAGEB6P1A0A0J9YX57 407 aa18.07■□□□□ 0.48
CLN3-222ENST00000566083 GDF11O95390 407 aa18.07■□□□□ 0.48
CLN3-222ENST00000566083 SGPL1O95470 568 aa18.07■□□□□ 0.48
CLN3-222ENST00000566083 INHAP05111 366 aa18.07■□□□□ 0.48
CLN3-222ENST00000566083 GPRC5AQ8NFJ5 357 aa18.07■□□□□ 0.48
CLN3-222ENST00000566083 SHISA4Q96DD7 197 aa18.07■□□□□ 0.48
CLN3-222ENST00000566083 GH2P01242 217 aa18.06■□□□□ 0.48
CLN3-222ENST00000566083 PDE3AQ14432 1141 aa18.06■□□□□ 0.48
CLN3-222ENST00000566083 CERKLQ49MI3 558 aaPredicted RBP18.06■□□□□ 0.48
CLN3-222ENST00000566083 HABP4Q5JVS0 413 aaKnown RBP18.06■□□□□ 0.48
CLN3-222ENST00000566083 CCAR1Q8IX12 1150 aaKnown RBP18.06■□□□□ 0.48
CLN3-222ENST00000566083 RIOK1Q9BRS2 568 aaKnown RBP18.06■□□□□ 0.48
CLN3-222ENST00000566083 UNC93B1Q9H1C4 597 aa18.06■□□□□ 0.48
CLN3-222ENST00000566083 MYH1P12882 1939 aa18.06■□□□□ 0.48
CLN3-222ENST00000566083 BRCA2P51587 3418 aa18.06■□□□□ 0.48
CLN3-222ENST00000566083 SIPA1L1O43166 1804 aa18.06■□□□□ 0.48
CLN3-222ENST00000566083 HMGCRP04035 888 aa18.06■□□□□ 0.48
CLN3-222ENST00000566083 POLR3DP05423 398 aaPredicted RBP18.06■□□□□ 0.48
CLN3-222ENST00000566083 ELNP15502 786 aa18.06■□□□□ 0.48
CLN3-222ENST00000566083 MAPK4P31152 587 aa18.06■□□□□ 0.48
CLN3-222ENST00000566083 HERVK_113P62684 666 aa18.06■□□□□ 0.48
CLN3-222ENST00000566083 TRMT44Q8IYL2 757 aaKnown RBP18.06■□□□□ 0.48
CLN3-222ENST00000566083 SOCS4Q8WXH5 440 aa18.06■□□□□ 0.48
CLN3-222ENST00000566083 DPF3Q92784 378 aa18.06■□□□□ 0.48
CLN3-222ENST00000566083 C12orf42Q96LP6 360 aa18.06■□□□□ 0.48
CLN3-222ENST00000566083 P2RX7Q99572 595 aaKnown RBP18.06■□□□□ 0.48
CLN3-222ENST00000566083 FEZ1Q99689 392 aa18.06■□□□□ 0.48
CLN3-222ENST00000566083 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.06■□□□□ 0.483e-6■■■■■ 42.3
CLN3-222ENST00000566083 NDUFB9Q9Y6M9 179 aa18.06■□□□□ 0.48
CLN3-222ENST00000566083 APBB1O00213 710 aa18.05■□□□□ 0.48
CLN3-222ENST00000566083 PDE6AP16499 860 aa18.05■□□□□ 0.48
CLN3-222ENST00000566083 ABCB5Q2M3G0 1257 aa18.05■□□□□ 0.48
CLN3-222ENST00000566083 UBE2Q1Q7Z7E8 422 aa18.05■□□□□ 0.48
CLN3-222ENST00000566083 PAK6Q9NQU5 681 aaPredicted RBP18.05■□□□□ 0.48
CLN3-222ENST00000566083 GJD2Q9UKL4 321 aa18.05■□□□□ 0.48
CLN3-222ENST00000566083 NR2E3Q9Y5X4 410 aa18.05■□□□□ 0.48
CLN3-222ENST00000566083 USP17L15C9J2P7 530 aa18.04■□□□□ 0.48
CLN3-222ENST00000566083 USP17L13C9JLJ4 530 aa18.04■□□□□ 0.48
CLN3-222ENST00000566083 USP17L11C9JVI0 530 aa18.04■□□□□ 0.48
CLN3-222ENST00000566083 USP17L18D6R9N7 530 aa18.04■□□□□ 0.48
CLN3-222ENST00000566083 USP17L22D6RA61 530 aa18.04■□□□□ 0.48
CLN3-222ENST00000566083 USP17L17D6RBQ6 530 aa18.04■□□□□ 0.48
CLN3-222ENST00000566083 USP17L19D6RCP7 530 aa18.04■□□□□ 0.48
CLN3-222ENST00000566083 USP17L20D6RJB6 530 aa18.04■□□□□ 0.48
CLN3-222ENST00000566083 GOLIM4O00461 696 aa18.04■□□□□ 0.48
CLN3-222ENST00000566083 FARP2O94887 1054 aaPredicted RBP18.04■□□□□ 0.48
CLN3-222ENST00000566083 TFRCP02786 760 aaKnown RBP18.04■□□□□ 0.48
CLN3-222ENST00000566083 XRCC5P13010 732 aaKnown RBP18.04■□□□□ 0.48
CLN3-222ENST00000566083 JAG1P78504 1218 aa18.04■□□□□ 0.48
CLN3-222ENST00000566083 USP17L24Q0WX57 530 aa18.04■□□□□ 0.48
CLN3-222ENST00000566083 SIRT2Q8IXJ6 389 aa18.04■□□□□ 0.48
CLN3-222ENST00000566083 DNAJC2Q99543 621 aaKnown RBP18.04■□□□□ 0.48
CLN3-222ENST00000566083 NUDT12Q9BQG2 462 aa18.04■□□□□ 0.48
CLN3-222ENST00000566083 KIAA1683Q9H0B3 1180 aa18.04■□□□□ 0.48
CLN3-222ENST00000566083 EMILIN3Q9NT22 766 aa18.04■□□□□ 0.48
CLN3-222ENST00000566083 ATP5JP18859 108 aa18.03■□□□□ 0.48
CLN3-222ENST00000566083 CCNA1P78396 465 aa18.03■□□□□ 0.48
CLN3-222ENST00000566083 RAB3GAP1Q15042 981 aa18.03■□□□□ 0.48
CLN3-222ENST00000566083 DEFB118Q96PH6 123 aa18.03■□□□□ 0.48
CLN3-222ENST00000566083 PAG1Q9NWQ8 432 aa18.03■□□□□ 0.48
CLN3-222ENST00000566083 MCM9Q9NXL9 1143 aa18.03■□□□□ 0.48
CLN3-222ENST00000566083 RPTORQ8N122 1335 aa18.03■□□□□ 0.48
CLN3-222ENST00000566083 ZNF532Q9HCE3 1301 aa18.03■□□□□ 0.48
CLN3-222ENST00000566083 GLRX3O76003 335 aaKnown RBP18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms