RNA–Protein interactions for RNA: ENST00000564899.1

SF3B3-205, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 551 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-205ENST00000564899 SLC3A2P08195 630 aaKnown RBP13.11□□□□□ -0.31
SF3B3-205ENST00000564899 HMGB1P09429 215 aaKnown RBP13.11□□□□□ -0.31
SF3B3-205ENST00000564899 FXR1P51114 621 aaKnown RBP eCLIP13.11□□□□□ -0.31
SF3B3-205ENST00000564899 CACNB3P54284 484 aa13.11□□□□□ -0.31
SF3B3-205ENST00000564899 NFIAQ12857 509 aa13.11□□□□□ -0.31
SF3B3-205ENST00000564899 TRDNQ13061 729 aa13.11□□□□□ -0.31
SF3B3-205ENST00000564899 TTLL12Q14166 644 aaPredicted RBP13.11□□□□□ -0.31
SF3B3-205ENST00000564899 SLC4A8Q2Y0W8 1093 aa13.11□□□□□ -0.31
SF3B3-205ENST00000564899 SPDYE2Q495Y8 402 aa13.11□□□□□ -0.31
SF3B3-205ENST00000564899 AKNAD1Q5T1N1 836 aa13.11□□□□□ -0.31
SF3B3-205ENST00000564899 RALYLQ86SE5 291 aaKnown RBP13.11□□□□□ -0.31
SF3B3-205ENST00000564899 REM2Q8IYK8 340 aaPredicted RBP13.11□□□□□ -0.31
SF3B3-205ENST00000564899 STAG1Q8WVM7 1258 aa13.11□□□□□ -0.31
SF3B3-205ENST00000564899 IDI2Q9BXS1 227 aa13.11□□□□□ -0.31
SF3B3-205ENST00000564899 OSBPL5Q9H0X9 879 aaPredicted RBP13.11□□□□□ -0.31
SF3B3-205ENST00000564899 RNF41Q9H4P4 317 aaPredicted RBP13.11□□□□□ -0.31
SF3B3-205ENST00000564899 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.11□□□□□ -0.31
SF3B3-205ENST00000564899 ZNF70Q9UC06 446 aaPredicted RBP13.11□□□□□ -0.31
SF3B3-205ENST00000564899 CYP46A1Q9Y6A2 500 aa13.11□□□□□ -0.31
SF3B3-205ENST00000564899 LAMA4Q16363 1823 aa13.11□□□□□ -0.31
SF3B3-205ENST00000564899 NEDD4P46934 1319 aa13.11□□□□□ -0.31
SF3B3-205ENST00000564899 NAV1Q8NEY1 1877 aa13.1□□□□□ -0.31
SF3B3-205ENST00000564899 NPM3O75607 178 aaKnown RBP13.1□□□□□ -0.31
SF3B3-205ENST00000564899 CPA1P15085 419 aa13.1□□□□□ -0.31
SF3B3-205ENST00000564899 RPS6KB1P23443 525 aa13.1□□□□□ -0.31
SF3B3-205ENST00000564899 C12orf60Q5U649 245 aa13.1□□□□□ -0.31
SF3B3-205ENST00000564899 MFSD6Q6ZSS7 791 aa13.1□□□□□ -0.31
SF3B3-205ENST00000564899 RUFY3Q7L099 469 aa13.1□□□□□ -0.31
SF3B3-205ENST00000564899 STK11IPQ8N1F8 1099 aa13.1□□□□□ -0.31
SF3B3-205ENST00000564899 IL27Q8NEV9 243 aa13.1□□□□□ -0.31
SF3B3-205ENST00000564899 NCOA7Q8NI08 942 aa13.1□□□□□ -0.31
SF3B3-205ENST00000564899 CNNM2Q9H8M5 875 aa13.1□□□□□ -0.31
SF3B3-205ENST00000564899 FAM198AQ9UFP1 575 aa13.1□□□□□ -0.31
SF3B3-205ENST00000564899 ROBO3Q96MS0 1386 aa13.09□□□□□ -0.31
SF3B3-205ENST00000564899 SMIM22K7EJ46 135 aa13.09□□□□□ -0.31
SF3B3-205ENST00000564899 IGF2BP3O00425 579 aaKnown RBP eCLIP13.09□□□□□ -0.31
SF3B3-205ENST00000564899 ENTPD3O75355 529 aa13.09□□□□□ -0.31
SF3B3-205ENST00000564899 PCP11498 1178 aaKnown RBP13.09□□□□□ -0.31
SF3B3-205ENST00000564899 EVX2Q03828 476 aa13.09□□□□□ -0.31
SF3B3-205ENST00000564899 TCP10Q12799 353 aa13.09□□□□□ -0.31
SF3B3-205ENST00000564899 BECN1Q14457 450 aa13.09□□□□□ -0.31
SF3B3-205ENST00000564899 NOM1Q5C9Z4 860 aaKnown RBP13.09□□□□□ -0.31
SF3B3-205ENST00000564899 DDX60LQ5H9U9 1706 aaKnown RBP13.09□□□□□ -0.31
SF3B3-205ENST00000564899 SPRYD7Q5W111 196 aa13.09□□□□□ -0.31
SF3B3-205ENST00000564899 OTOP1Q7RTM1 612 aa13.09□□□□□ -0.31
SF3B3-205ENST00000564899 TTC6Q86TZ1 520 aa13.09□□□□□ -0.31
SF3B3-205ENST00000564899 HSCBQ8IWL3 235 aa13.09□□□□□ -0.31
SF3B3-205ENST00000564899 SNX21Q969T3 373 aa13.09□□□□□ -0.31
SF3B3-205ENST00000564899 CLMNQ96JQ2 1002 aa13.09□□□□□ -0.31
SF3B3-205ENST00000564899 CFHR5Q9BXR6 569 aa13.09□□□□□ -0.31
SF3B3-205ENST00000564899 KRT23Q9C075 422 aa13.09□□□□□ -0.31
SF3B3-205ENST00000564899 VEZTQ9HBM0 779 aa13.09□□□□□ -0.31
SF3B3-205ENST00000564899 TOMM22Q9NS69 142 aa13.09□□□□□ -0.31
SF3B3-205ENST00000564899 PDRG1Q9NUG6 133 aa13.09□□□□□ -0.31
SF3B3-205ENST00000564899 TRIM17Q9Y577 477 aa13.09□□□□□ -0.31
SF3B3-205ENST00000564899 TACC3Q9Y6A5 838 aa13.09□□□□□ -0.31
SF3B3-205ENST00000564899 RBBP6Q7Z6E9 1792 aaKnown RBP13.09□□□□□ -0.31
SF3B3-205ENST00000564899 LAMA3Q16787 3333 aa13.09□□□□□ -0.31
SF3B3-205ENST00000564899 COL6A3P12111 3177 aa13.09□□□□□ -0.31
SF3B3-205ENST00000564899 B4E1Z4 1266 aa13.08□□□□□ -0.32
SF3B3-205ENST00000564899 TCP10L2B9ZVM9 353 aa13.08□□□□□ -0.32
SF3B3-205ENST00000564899 CD2BP2O95400 341 aaKnown RBP13.08□□□□□ -0.32
SF3B3-205ENST00000564899 HLA-DOAP06340 250 aa13.08□□□□□ -0.32
SF3B3-205ENST00000564899 EN2P19622 333 aaPredicted RBP13.08□□□□□ -0.32
SF3B3-205ENST00000564899 PLCD1P51178 756 aa13.08□□□□□ -0.32
SF3B3-205ENST00000564899 PDE4BQ07343 736 aa13.08□□□□□ -0.32
SF3B3-205ENST00000564899 COL9A3Q14050 684 aaPredicted RBP13.08□□□□□ -0.32
SF3B3-205ENST00000564899 RRP12Q5JTH9 1297 aaKnown RBP13.08□□□□□ -0.32
SF3B3-205ENST00000564899 DHX32Q7L7V1 743 aaKnown RBP13.08□□□□□ -0.32
SF3B3-205ENST00000564899 MB21D2Q8IYB1 491 aaPredicted RBP13.08□□□□□ -0.32
SF3B3-205ENST00000564899 DYNLL2Q96FJ2 89 aa13.08□□□□□ -0.32
SF3B3-205ENST00000564899 TCEANC2Q96MN5 208 aa13.08□□□□□ -0.32
SF3B3-205ENST00000564899 TTC14Q96N46 770 aa13.08□□□□□ -0.32
SF3B3-205ENST00000564899 INCENPQ9NQS7 918 aa13.08□□□□□ -0.32
SF3B3-205ENST00000564899 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.08□□□□□ -0.32
SF3B3-205ENST00000564899 LAMB1P07942 1786 aa13.07□□□□□ -0.32
SF3B3-205ENST00000564899 ORC4O43929 436 aa13.07□□□□□ -0.32
SF3B3-205ENST00000564899 MCM5P33992 734 aa13.07□□□□□ -0.32
SF3B3-205ENST00000564899 MCM2P49736 904 aa13.07□□□□□ -0.32
SF3B3-205ENST00000564899 LDLRAD1Q5T700 205 aa13.07□□□□□ -0.32
SF3B3-205ENST00000564899 FKBP1CQ5VVH2 108 aa13.07□□□□□ -0.32
SF3B3-205ENST00000564899 ZSCAN29Q8IWY8 852 aaPredicted RBP13.07□□□□□ -0.32
SF3B3-205ENST00000564899 ZFPM1Q8IX07 1006 aa13.07□□□□□ -0.32
SF3B3-205ENST00000564899 ESR2Q92731 530 aa13.07□□□□□ -0.32
SF3B3-205ENST00000564899 TBC1D2Q9BYX2 928 aa13.07□□□□□ -0.32
SF3B3-205ENST00000564899 DHX36Q9H2U1 1008 aaKnown RBP13.07□□□□□ -0.32
SF3B3-205ENST00000564899 COL2A1P02458 1487 aaPredicted RBP13.07□□□□□ -0.32
SF3B3-205ENST00000564899 BAZ2AQ9UIF9 1905 aaKnown RBP13.07□□□□□ -0.32
SF3B3-205ENST00000564899 FOCADQ5VW36 1801 aa13.06□□□□□ -0.32
SF3B3-205ENST00000564899 PRC1O43663 620 aa13.06□□□□□ -0.32
SF3B3-205ENST00000564899 KDM4AO75164 1064 aa13.06□□□□□ -0.32
SF3B3-205ENST00000564899 PRDM1O75626 825 aa13.06□□□□□ -0.32
SF3B3-205ENST00000564899 FGRP09769 529 aa13.06□□□□□ -0.32
SF3B3-205ENST00000564899 GJA5P36382 358 aa13.06□□□□□ -0.32
SF3B3-205ENST00000564899 AK2P54819 239 aa13.06□□□□□ -0.32
SF3B3-205ENST00000564899 FGD1P98174 961 aa13.06□□□□□ -0.32
SF3B3-205ENST00000564899 EXOSC10Q01780 885 aaKnown RBP13.06□□□□□ -0.32
SF3B3-205ENST00000564899 SREBF2Q12772 1141 aa13.06□□□□□ -0.32
SF3B3-205ENST00000564899 Q6ZUG5 572 aa13.06□□□□□ -0.32
SF3B3-205ENST00000564899 C16orf86Q6ZW13 317 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms