RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 ADAMTS3O15072 1205 aa15.46■□□□□ 0.07
CLK3-215ENST00000564353 ZSCAN20P17040 1043 aaPredicted RBP15.46■□□□□ 0.07
CLK3-215ENST00000564353 POSTNQ15063 836 aa15.46■□□□□ 0.07
CLK3-215ENST00000564353 ZNF174Q15697 407 aa15.46■□□□□ 0.07
CLK3-215ENST00000564353 TICAM2Q86XR7 235 aa15.46■□□□□ 0.07
CLK3-215ENST00000564353 DESI2Q9BSY9 194 aa15.46■□□□□ 0.07
CLK3-215ENST00000564353 FBXO2Q9UK22 296 aaPredicted RBP15.46■□□□□ 0.07
CLK3-215ENST00000564353 BAZ2BQ9UIF8 2168 aaKnown RBP15.46■□□□□ 0.07
CLK3-215ENST00000564353 A0A087X0B3 334 aa15.46■□□□□ 0.07
CLK3-215ENST00000564353 FBXO38Q6PIJ6 1188 aa15.46■□□□□ 0.07
CLK3-215ENST00000564353 PTF1AQ7RTS3 328 aa15.46■□□□□ 0.07
CLK3-215ENST00000564353 BPIFA3Q9BQP9 254 aa15.46■□□□□ 0.07
CLK3-215ENST00000564353 ST7Q9NRC1 585 aa15.46■□□□□ 0.07
CLK3-215ENST00000564353 NHSL1Q5SYE7 1610 aa15.46■□□□□ 0.07
CLK3-215ENST00000564353 COL4A1P02462 1669 aa15.46■□□□□ 0.06
CLK3-215ENST00000564353 FANCGO15287 622 aa15.45■□□□□ 0.06
CLK3-215ENST00000564353 CNNM2Q9H8M5 875 aa15.45■□□□□ 0.06
CLK3-215ENST00000564353 SPEF2Q9C093 1822 aa15.45■□□□□ 0.06
CLK3-215ENST00000564353 NTSR2O95665 410 aa15.45■□□□□ 0.06
CLK3-215ENST00000564353 CYP2D6P10635 497 aa15.45■□□□□ 0.06
CLK3-215ENST00000564353 CDC25AP30304 524 aa15.45■□□□□ 0.06
CLK3-215ENST00000564353 AKAP17AQ02040 695 aaKnown RBP15.45■□□□□ 0.06
CLK3-215ENST00000564353 FAM182BQ5T319 152 aa15.45■□□□□ 0.06
CLK3-215ENST00000564353 ENAHQ8N8S7 591 aaPredicted RBP15.45■□□□□ 0.06
CLK3-215ENST00000564353 MARCH10Q8NA82 808 aaPredicted RBP15.45■□□□□ 0.06
CLK3-215ENST00000564353 CCDC150Q8NCX0 1101 aa15.45■□□□□ 0.06
CLK3-215ENST00000564353 STAG1Q8WVM7 1258 aa15.45■□□□□ 0.06
CLK3-215ENST00000564353 CELF1Q92879 486 aaKnown RBP15.45■□□□□ 0.06
CLK3-215ENST00000564353 AATFQ9NY61 560 aaKnown RBP eCLIP15.45■□□□□ 0.06
CLK3-215ENST00000564353 ATRNO75882 1429 aa15.45■□□□□ 0.06
CLK3-215ENST00000564353 MED15Q96RN5 788 aa15.44■□□□□ 0.06
CLK3-215ENST00000564353 IMPACTQ9P2X3 320 aa15.44■□□□□ 0.06
CLK3-215ENST00000564353 C4AP0C0L4 1744 aa15.44■□□□□ 0.06
CLK3-215ENST00000564353 C4BP0C0L5 1744 aa15.44■□□□□ 0.06
CLK3-215ENST00000564353 ALX1Q15699 326 aa15.44■□□□□ 0.06
CLK3-215ENST00000564353 USP17L12C9JPN9 530 aa15.44■□□□□ 0.06
CLK3-215ENST00000564353 USP17L21D6R901 530 aa15.44■□□□□ 0.06
CLK3-215ENST00000564353 URI1O94763 535 aaPredicted RBP15.44■□□□□ 0.06
CLK3-215ENST00000564353 BRD2P25440 801 aaKnown RBP15.44■□□□□ 0.06
CLK3-215ENST00000564353 ZNF384Q8TF68 577 aa15.44■□□□□ 0.06
CLK3-215ENST00000564353 SMARCE1Q969G3 411 aa15.44■□□□□ 0.06
CLK3-215ENST00000564353 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.43■□□□□ 0.06
CLK3-215ENST00000564353 A0A0U1RQJ8 604 aa15.43■□□□□ 0.06
CLK3-215ENST00000564353 IKBKBO14920 756 aa15.43■□□□□ 0.06
CLK3-215ENST00000564353 SLU7O95391 586 aaKnown RBP15.43■□□□□ 0.06
CLK3-215ENST00000564353 DEXIO95424 95 aa15.43■□□□□ 0.06
CLK3-215ENST00000564353 MDM2Q00987 491 aaPredicted RBP15.43■□□□□ 0.06
CLK3-215ENST00000564353 MTF1Q14872 753 aa15.43■□□□□ 0.06
CLK3-215ENST00000564353 IFIT1BQ5T764 474 aaKnown RBP15.43■□□□□ 0.06
CLK3-215ENST00000564353 ATRIPQ8WXE1 791 aa15.43■□□□□ 0.06
CLK3-215ENST00000564353 SECISBP2LQ93073 1101 aaKnown RBP15.43■□□□□ 0.06
CLK3-215ENST00000564353 TIGD1Q96MW7 591 aa15.43■□□□□ 0.06
CLK3-215ENST00000564353 BLZF1Q9H2G9 400 aa15.43■□□□□ 0.06
CLK3-215ENST00000564353 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.43■□□□□ 0.06
CLK3-215ENST00000564353 KARSQ15046 597 aaKnown RBP15.43■□□□□ 0.06
CLK3-215ENST00000564353 TOGARAM2Q6ZUX3 1019 aa15.43■□□□□ 0.06
CLK3-215ENST00000564353 IRX2Q9BZI1 471 aaPredicted RBP15.43■□□□□ 0.06
CLK3-215ENST00000564353 MAPK8IP1Q9UQF2 711 aa15.43■□□□□ 0.06
CLK3-215ENST00000564353 VWA3AA6NCI4 1184 aa15.42■□□□□ 0.06
CLK3-215ENST00000564353 PTPREP23469 700 aa15.42■□□□□ 0.06
CLK3-215ENST00000564353 ROBO1Q9Y6N7 1651 aa15.42■□□□□ 0.06
CLK3-215ENST00000564353 LRP6O75581 1613 aa15.42■□□□□ 0.06
CLK3-215ENST00000564353 TEX33O43247 280 aa15.42■□□□□ 0.06
CLK3-215ENST00000564353 ANKRD18AQ8IVF6 992 aa15.42■□□□□ 0.06
CLK3-215ENST00000564353 VSTM4Q8IW00 320 aa15.42■□□□□ 0.06
CLK3-215ENST00000564353 WASF1Q92558 559 aa15.42■□□□□ 0.06
CLK3-215ENST00000564353 ESR2Q92731 530 aa15.42■□□□□ 0.06
CLK3-215ENST00000564353 DMTNQ08495 405 aa15.41■□□□□ 0.06
CLK3-215ENST00000564353 PKN1Q16512 942 aa15.41■□□□□ 0.06
CLK3-215ENST00000564353 RILPL1Q5EBL4 403 aa15.41■□□□□ 0.06
CLK3-215ENST00000564353 SYMPKQ92797 1274 aaKnown RBP15.41■□□□□ 0.06
CLK3-215ENST00000564353 ZSCAN10Q96SZ4 725 aaPredicted RBP15.41■□□□□ 0.06
CLK3-215ENST00000564353 ZSWIM4Q9H7M6 989 aa15.41■□□□□ 0.06
CLK3-215ENST00000564353 MYH7P12883 1935 aa15.41■□□□□ 0.06
CLK3-215ENST00000564353 ZBTB22O15209 634 aa15.41■□□□□ 0.06
CLK3-215ENST00000564353 CD44P16070 742 aaKnown RBP15.41■□□□□ 0.06
CLK3-215ENST00000564353 PRDX5P30044 214 aa15.41■□□□□ 0.06
CLK3-215ENST00000564353 CGNQ9P2M7 1197 aaKnown RBP15.41■□□□□ 0.06
CLK3-215ENST00000564353 SRP68Q9UHB9 627 aaKnown RBP15.41■□□□□ 0.06
CLK3-215ENST00000564353 DISP2A7MBM2 1401 aa15.41■□□□□ 0.06
CLK3-215ENST00000564353 NRDCO43847 1150 aa15.4■□□□□ 0.06
CLK3-215ENST00000564353 RIOK1Q9BRS2 568 aaKnown RBP15.4■□□□□ 0.06
CLK3-215ENST00000564353 ITGB4P16144 1822 aa15.4■□□□□ 0.06
CLK3-215ENST00000564353 ACTN4O43707 911 aaKnown RBP15.4■□□□□ 0.06
CLK3-215ENST00000564353 SEC23AQ15436 765 aa15.4■□□□□ 0.06
CLK3-215ENST00000564353 RASGRP4Q8TDF6 673 aa15.4■□□□□ 0.06
CLK3-215ENST00000564353 EEF2KMTQ96G04 330 aa15.4■□□□□ 0.06
CLK3-215ENST00000564353 GPR101Q96P66 508 aaPredicted RBP15.4■□□□□ 0.06
CLK3-215ENST00000564353 PLIN2Q99541 437 aa15.4■□□□□ 0.06
CLK3-215ENST00000564353 FOXP1Q9H334 677 aaPredicted RBP15.4■□□□□ 0.06
CLK3-215ENST00000564353 COL1A1P02452 1464 aaPredicted RBP15.4■□□□□ 0.06
CLK3-215ENST00000564353 NUP98P52948 1817 aa15.4■□□□□ 0.06
CLK3-215ENST00000564353 GNAT2P19087 354 aa15.39■□□□□ 0.06
CLK3-215ENST00000564353 MCM7P33993 719 aa15.39■□□□□ 0.06
CLK3-215ENST00000564353 PIK3AP1Q6ZUJ8 805 aa15.39■□□□□ 0.06
CLK3-215ENST00000564353 TXNRD3Q86VQ6 643 aa15.39■□□□□ 0.06
CLK3-215ENST00000564353 FAM84BQ96KN1 310 aaPredicted RBP15.39■□□□□ 0.06
CLK3-215ENST00000564353 WDR24Q96S15 920 aa15.39■□□□□ 0.06
CLK3-215ENST00000564353 RNF41Q9H4P4 317 aaPredicted RBP15.39■□□□□ 0.06
CLK3-215ENST00000564353 MINPP1Q9UNW1 487 aa15.39■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms