RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 TATDN1Q6P1N9 297 aa20.95■□□□□ 0.94
VPS9D1-203ENST00000563798 ANKRD13CQ8N6S4 541 aa20.95■□□□□ 0.94
VPS9D1-203ENST00000563798 MIGA1Q8NAN2 632 aa20.95■□□□□ 0.94
VPS9D1-203ENST00000563798 NKX2-3Q8TAU0 364 aa20.95■□□□□ 0.94
VPS9D1-203ENST00000563798 RIOK1Q9BRS2 568 aaKnown RBP20.95■□□□□ 0.94
VPS9D1-203ENST00000563798 ASCC2Q9H1I8 757 aaPredicted RBP20.95■□□□□ 0.94
VPS9D1-203ENST00000563798 TNPO2O14787 897 aaKnown RBP20.94■□□□□ 0.94
VPS9D1-203ENST00000563798 GJB1P08034 283 aa20.94■□□□□ 0.94
VPS9D1-203ENST00000563798 FLT3LGP49771 235 aa20.94■□□□□ 0.94
VPS9D1-203ENST00000563798 TRIM34Q9BYJ4 488 aa20.94■□□□□ 0.94
VPS9D1-203ENST00000563798 SAP30BPQ9UHR5 308 aaKnown RBP20.94■□□□□ 0.94
VPS9D1-203ENST00000563798 ZBTB21Q9ULJ3 1066 aa20.94■□□□□ 0.94
VPS9D1-203ENST00000563798 MYCP01106 439 aaPredicted RBP20.93■□□□□ 0.94
VPS9D1-203ENST00000563798 GJA8P48165 433 aa20.93■□□□□ 0.94
VPS9D1-203ENST00000563798 UBXN2AP68543 259 aa20.93■□□□□ 0.94
VPS9D1-203ENST00000563798 MTMR2Q13614 643 aa20.93■□□□□ 0.94
VPS9D1-203ENST00000563798 PDE3AQ14432 1141 aa20.93■□□□□ 0.94
VPS9D1-203ENST00000563798 GCC1Q96CN9 775 aa20.93■□□□□ 0.94
VPS9D1-203ENST00000563798 SHISA4Q96DD7 197 aa20.93■□□□□ 0.94
VPS9D1-203ENST00000563798 MORF4L1Q9UBU8 362 aa20.93■□□□□ 0.94
VPS9D1-203ENST00000563798 USP17L10C9JJH3 530 aa20.92■□□□□ 0.94
VPS9D1-203ENST00000563798 ADCY3O60266 1144 aa20.92■□□□□ 0.94
VPS9D1-203ENST00000563798 CCL5P13501 91 aa20.92■□□□□ 0.94
VPS9D1-203ENST00000563798 CAPN2P17655 700 aa20.92■□□□□ 0.94
VPS9D1-203ENST00000563798 USP5P45974 858 aa20.92■□□□□ 0.94
VPS9D1-203ENST00000563798 TTC6Q86TZ1 520 aa20.92■□□□□ 0.94
VPS9D1-203ENST00000563798 COA7Q96BR5 231 aa20.92■□□□□ 0.94
VPS9D1-203ENST00000563798 TMOD4Q9NZQ9 345 aa20.92■□□□□ 0.94
VPS9D1-203ENST00000563798 SERPINB13Q9UIV8 391 aa20.92■□□□□ 0.94
VPS9D1-203ENST00000563798 GDF11O95390 407 aa20.91■□□□□ 0.94
VPS9D1-203ENST00000563798 IFIT2P09913 472 aaKnown RBP20.91■□□□□ 0.94
VPS9D1-203ENST00000563798 PDE6AP16499 860 aa20.91■□□□□ 0.94
VPS9D1-203ENST00000563798 SHROOM1Q2M3G4 852 aaPredicted RBP20.91■□□□□ 0.94
VPS9D1-203ENST00000563798 UBE2Q1Q7Z7E8 422 aa20.91■□□□□ 0.94
VPS9D1-203ENST00000563798 MYH1P12882 1939 aa20.9■□□□□ 0.94
VPS9D1-203ENST00000563798 SLC9C2Q5TAH2 1124 aa20.9■□□□□ 0.94
VPS9D1-203ENST00000563798 RNF208Q9H0X6 261 aa20.9■□□□□ 0.94
VPS9D1-203ENST00000563798 MAGEB6P1A0A0J9YX57 407 aa20.89■□□□□ 0.93
VPS9D1-203ENST00000563798 TCRBV5S4A2TA0A5A2 114 aa20.89■□□□□ 0.93
VPS9D1-203ENST00000563798 C12orf42Q96LP6 360 aa20.89■□□□□ 0.93
VPS9D1-203ENST00000563798 EMILIN3Q9NT22 766 aa20.89■□□□□ 0.93
VPS9D1-203ENST00000563798 BIN2Q9UBW5 565 aaPredicted RBP20.89■□□□□ 0.93
VPS9D1-203ENST00000563798 GJD2Q9UKL4 321 aa20.89■□□□□ 0.93
VPS9D1-203ENST00000563798 DDX60LQ5H9U9 1706 aaKnown RBP20.89■□□□□ 0.93
VPS9D1-203ENST00000563798 GOLIM4O00461 696 aa20.88■□□□□ 0.93
VPS9D1-203ENST00000563798 GH2P01242 217 aa20.88■□□□□ 0.93
VPS9D1-203ENST00000563798 ATP5JP18859 108 aa20.88■□□□□ 0.93
VPS9D1-203ENST00000563798 IRX3P78415 501 aaPredicted RBP20.88■□□□□ 0.93
VPS9D1-203ENST00000563798 GABPAQ06546 454 aa20.88■□□□□ 0.93
VPS9D1-203ENST00000563798 USP17L2Q6R6M4 530 aa20.88■□□□□ 0.93
VPS9D1-203ENST00000563798 P2RX7Q99572 595 aaKnown RBP20.88■□□□□ 0.93
VPS9D1-203ENST00000563798 UNC93B1Q9H1C4 597 aa20.88■□□□□ 0.93
VPS9D1-203ENST00000563798 TAOK2Q9UL54 1235 aa20.88■□□□□ 0.93
VPS9D1-203ENST00000563798 ZNF532Q9HCE3 1301 aa20.87■□□□□ 0.93
VPS9D1-203ENST00000563798 APBB1O00213 710 aa20.87■□□□□ 0.93
VPS9D1-203ENST00000563798 INHAP05111 366 aa20.87■□□□□ 0.93
VPS9D1-203ENST00000563798 ELNP15502 786 aa20.87■□□□□ 0.93
VPS9D1-203ENST00000563798 PLCD1P51178 756 aa20.87■□□□□ 0.93
VPS9D1-203ENST00000563798 HERVK_113P62684 666 aa20.87■□□□□ 0.93
VPS9D1-203ENST00000563798 U2AF1L4Q8WU68 220 aaKnown RBP20.87■□□□□ 0.93
VPS9D1-203ENST00000563798 GTF3C2Q8WUA4 911 aaPredicted RBP20.87■□□□□ 0.93
VPS9D1-203ENST00000563798 CRNKL1Q9BZJ0 848 aaKnown RBP20.87■□□□□ 0.93
VPS9D1-203ENST00000563798 SGPL1O95470 568 aa20.86■□□□□ 0.93
VPS9D1-203ENST00000563798 SHMT1P34896 483 aa20.86■□□□□ 0.93
VPS9D1-203ENST00000563798 CERKLQ49MI3 558 aaPredicted RBP20.86■□□□□ 0.93
VPS9D1-203ENST00000563798 C20orf194Q5TEA3 1177 aa20.86■□□□□ 0.93
VPS9D1-203ENST00000563798 DNAJC2Q99543 621 aaKnown RBP20.86■□□□□ 0.93
VPS9D1-203ENST00000563798 KIAA1683Q9H0B3 1180 aa20.86■□□□□ 0.93
VPS9D1-203ENST00000563798 PAK6Q9NQU5 681 aaPredicted RBP20.86■□□□□ 0.93
VPS9D1-203ENST00000563798 RBPJLQ9UBG7 517 aa20.86■□□□□ 0.93
VPS9D1-203ENST00000563798 DOCK3Q8IZD9 2030 aa20.85■□□□□ 0.93
VPS9D1-203ENST00000563798 ABCB5Q2M3G0 1257 aa20.85■□□□□ 0.93
VPS9D1-203ENST00000563798 GPRC5AQ8NFJ5 357 aa20.85■□□□□ 0.93
VPS9D1-203ENST00000563798 HAUS7Q99871 368 aa20.85■□□□□ 0.93
VPS9D1-203ENST00000563798 PAG1Q9NWQ8 432 aa20.85■□□□□ 0.93
VPS9D1-203ENST00000563798 USP14P54578 494 aa20.84■□□□□ 0.93
VPS9D1-203ENST00000563798 EDC3Q96F86 508 aaKnown RBP20.84■□□□□ 0.93
VPS9D1-203ENST00000563798 TXNRD2Q9NNW7 524 aa20.84■□□□□ 0.93
VPS9D1-203ENST00000563798 DCP1AQ9NPI6 582 aaPredicted RBP20.84■□□□□ 0.93
VPS9D1-203ENST00000563798 POLR3DP05423 398 aaPredicted RBP20.83■□□□□ 0.93
VPS9D1-203ENST00000563798 GUCY1A2P33402 732 aa20.83■□□□□ 0.93
VPS9D1-203ENST00000563798 ADD2P35612 726 aa20.83■□□□□ 0.93
VPS9D1-203ENST00000563798 HABP4Q5JVS0 413 aaKnown RBP20.83■□□□□ 0.93
VPS9D1-203ENST00000563798 POTEEQ6S8J3 1075 aa20.83■□□□□ 0.93
VPS9D1-203ENST00000563798 LCORLQ8N3X6 602 aa20.83■□□□□ 0.93
VPS9D1-203ENST00000563798 LRRCC1Q9C099 1032 aa20.83■□□□□ 0.93
VPS9D1-203ENST00000563798 CRISPLD2Q9H0B8 497 aa20.83■□□□□ 0.93
VPS9D1-203ENST00000563798 BOLA2Q9H3K6 86 aa20.83■□□□□ 0.93
VPS9D1-203ENST00000563798 CABP5Q9NP86 173 aa20.83■□□□□ 0.93
VPS9D1-203ENST00000563798 MCM9Q9NXL9 1143 aa20.83■□□□□ 0.93
VPS9D1-203ENST00000563798 USP17L15C9J2P7 530 aa20.82■□□□□ 0.92
VPS9D1-203ENST00000563798 USP17L13C9JLJ4 530 aa20.82■□□□□ 0.92
VPS9D1-203ENST00000563798 USP17L11C9JVI0 530 aa20.82■□□□□ 0.92
VPS9D1-203ENST00000563798 USP17L18D6R9N7 530 aa20.82■□□□□ 0.92
VPS9D1-203ENST00000563798 USP17L22D6RA61 530 aa20.82■□□□□ 0.92
VPS9D1-203ENST00000563798 USP17L17D6RBQ6 530 aa20.82■□□□□ 0.92
VPS9D1-203ENST00000563798 USP17L19D6RCP7 530 aa20.82■□□□□ 0.92
VPS9D1-203ENST00000563798 USP17L20D6RJB6 530 aa20.82■□□□□ 0.92
VPS9D1-203ENST00000563798 HMGCRP04035 888 aa20.82■□□□□ 0.92
VPS9D1-203ENST00000563798 MAPK4P31152 587 aa20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms