RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 NUTM2EB1AL46 878 aaPredicted RBP6.93□□□□□ -1.3
CLK3-212ENST00000563418 DNA2P51530 1060 aa6.93□□□□□ -1.3
CLK3-212ENST00000563418 USP33Q8TEY7 942 aa6.93□□□□□ -1.3
CLK3-212ENST00000563418 BICD1Q96G01 975 aa6.93□□□□□ -1.3
CLK3-212ENST00000563418 KDM5CP41229 1560 aa6.93□□□□□ -1.3
CLK3-212ENST00000563418 ABLIM1O14639 778 aa6.93□□□□□ -1.3
CLK3-212ENST00000563418 DCTN3O75935 186 aa6.93□□□□□ -1.3
CLK3-212ENST00000563418 PAX7P23759 505 aa6.93□□□□□ -1.3
CLK3-212ENST00000563418 CASP10Q92851 521 aa6.93□□□□□ -1.3
CLK3-212ENST00000563418 EXOC1Q9NV70 894 aa6.93□□□□□ -1.3
CLK3-212ENST00000563418 GMNCA6NCL1 334 aa6.92□□□□□ -1.3
CLK3-212ENST00000563418 ROR2Q01974 943 aaKnown RBP6.92□□□□□ -1.3
CLK3-212ENST00000563418 PREPLQ4J6C6 727 aaPredicted RBP6.92□□□□□ -1.3
CLK3-212ENST00000563418 RRAGBQ5VZM2 374 aa6.92□□□□□ -1.3
CLK3-212ENST00000563418 TEX13AQ9BXU3 409 aaPredicted RBP6.92□□□□□ -1.3
CLK3-212ENST00000563418 MSH6P52701 1360 aa6.92□□□□□ -1.3
CLK3-212ENST00000563418 GPTP24298 496 aa6.92□□□□□ -1.3
CLK3-212ENST00000563418 NUGGCQ68CJ6 796 aa6.92□□□□□ -1.3
CLK3-212ENST00000563418 ARHGEF25Q86VW2 580 aa6.92□□□□□ -1.3
CLK3-212ENST00000563418 SPDYE1Q8NFV5 336 aaPredicted RBP6.92□□□□□ -1.3
CLK3-212ENST00000563418 IGF1RP08069 1367 aa6.92□□□□□ -1.3
CLK3-212ENST00000563418 A0A1W2PQ27 194 aa6.92□□□□□ -1.3
CLK3-212ENST00000563418 A0A1W2PQ64 194 aa6.92□□□□□ -1.3
CLK3-212ENST00000563418 A0A1W2PQD8 194 aa6.92□□□□□ -1.3
CLK3-212ENST00000563418 SMARCA5O60264 1052 aaPredicted RBP6.92□□□□□ -1.3
CLK3-212ENST00000563418 EIF2S1P05198 315 aaKnown RBP6.92□□□□□ -1.3
CLK3-212ENST00000563418 PSEN1P49768 467 aa6.92□□□□□ -1.3
CLK3-212ENST00000563418 MAP3K7CLP57077 242 aa6.92□□□□□ -1.3
CLK3-212ENST00000563418 SSRP1Q08945 709 aaKnown RBP6.92□□□□□ -1.3
CLK3-212ENST00000563418 KPNB1Q14974 876 aaKnown RBP6.92□□□□□ -1.3
CLK3-212ENST00000563418 NRBP1Q9UHY1 535 aa6.92□□□□□ -1.3
CLK3-212ENST00000563418 TPCN1Q9ULQ1 816 aa6.92□□□□□ -1.3
CLK3-212ENST00000563418 UBN2Q6ZU65 1347 aa6.92□□□□□ -1.3
CLK3-212ENST00000563418 GGCXP38435 758 aa6.92□□□□□ -1.3
CLK3-212ENST00000563418 CTCFP49711 727 aaPredicted RBP6.92□□□□□ -1.3
CLK3-212ENST00000563418 FAM133BQ5BKY9 247 aaKnown RBP6.92□□□□□ -1.3
CLK3-212ENST00000563418 I3L4J1 428 aa6.92□□□□□ -1.3
CLK3-212ENST00000563418 ALDH1L1O75891 902 aa6.92□□□□□ -1.3
CLK3-212ENST00000563418 DIXDC1Q155Q3 683 aa6.92□□□□□ -1.3
CLK3-212ENST00000563418 ADALQ6DHV7 355 aa6.92□□□□□ -1.3
CLK3-212ENST00000563418 NYAP1Q6ZVC0 841 aa6.92□□□□□ -1.3
CLK3-212ENST00000563418 YTHDF3Q7Z739 585 aaKnown RBP6.92□□□□□ -1.3
CLK3-212ENST00000563418 KRI1Q8N9T8 703 aaKnown RBP6.92□□□□□ -1.3
CLK3-212ENST00000563418 HAUS8Q9BT25 410 aa6.92□□□□□ -1.3
CLK3-212ENST00000563418 CTNND1O60716 968 aaKnown RBP6.92□□□□□ -1.3
CLK3-212ENST00000563418 KRT13P13646 458 aa6.92□□□□□ -1.3
CLK3-212ENST00000563418 MRPL12P52815 198 aaKnown RBP6.92□□□□□ -1.3
CLK3-212ENST00000563418 DDR1Q08345 913 aa6.92□□□□□ -1.3
CLK3-212ENST00000563418 MORC4Q8TE76 937 aa6.92□□□□□ -1.3
CLK3-212ENST00000563418 FSBPO95073 299 aa6.92□□□□□ -1.3
CLK3-212ENST00000563418 KRT75O95678 551 aa6.92□□□□□ -1.3
CLK3-212ENST00000563418 ZNF449Q6P9G9 518 aa6.92□□□□□ -1.3
CLK3-212ENST00000563418 HS2ST1Q7LGA3 356 aa6.92□□□□□ -1.3
CLK3-212ENST00000563418 HIC2Q96JB3 615 aa6.92□□□□□ -1.3
CLK3-212ENST00000563418 CATSPER2Q96P56 530 aa6.92□□□□□ -1.3
CLK3-212ENST00000563418 C10orf88Q9H8K7 445 aa6.92□□□□□ -1.3
CLK3-212ENST00000563418 TBC1D23Q9NUY8 699 aa6.92□□□□□ -1.3
CLK3-212ENST00000563418 NEK2P51955 445 aa6.92□□□□□ -1.3
CLK3-212ENST00000563418 MKRN3Q13064 507 aaKnown RBP6.92□□□□□ -1.3
CLK3-212ENST00000563418 DHX58Q96C10 678 aa6.92□□□□□ -1.3
CLK3-212ENST00000563418 PUS7Q96PZ0 661 aaKnown RBP6.92□□□□□ -1.3
CLK3-212ENST00000563418 INTS9Q9NV88 658 aaKnown RBP6.92□□□□□ -1.3
CLK3-212ENST00000563418 TLDC2A0PJX2 215 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 C21orf2O43822 256 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 KLHL33A6NCF5 533 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 PDE1BQ01064 536 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 C16orf87Q6PH81 154 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 SPZ1Q9BXG8 430 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 ERCC6Q03468 1493 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 TPD52L2O43399 206 aaKnown RBP6.91□□□□□ -1.3
CLK3-212ENST00000563418 PHEXP78562 749 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 CETN1Q12798 172 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 PPP4R3AQ6IN85 833 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 SESTD1Q86VW0 696 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 VSTM4Q8IW00 320 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 PPP1R14BQ96C90 147 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 DKK3Q9UBP4 350 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 RASGRF2O14827 1237 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 ZNF202O95125 648 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 HSPA9P38646 679 aaKnown RBP6.91□□□□□ -1.3
CLK3-212ENST00000563418 DHX9Q08211 1270 aaKnown RBP6.91□□□□□ -1.3
CLK3-212ENST00000563418 CEP70Q8NHQ1 597 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 CASP14P31944 242 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 ANKRD20A4Q4UJ75 823 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 ANKRD20A8PQ5CZ79 823 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 ANKRD20A2Q5SQ80 823 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 ANKRD20A1Q5TYW2 823 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 LRRC8CQ8TDW0 803 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 CCDC43Q96MW1 224 aaKnown RBP6.91□□□□□ -1.3
CLK3-212ENST00000563418 SPATA31E1Q6ZUB1 1445 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 NUTM2FA1L443 756 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 GOLGA8AA7E2F4 631 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 SART1O43290 800 aaKnown RBP6.91□□□□□ -1.3
CLK3-212ENST00000563418 ACADSP16219 412 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 KRT4P19013 534 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 NUTM2GQ5VZR2 741 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 CYB5D1Q6P9G0 228 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 SPG7Q9UQ90 795 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 TXNDC9O14530 226 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 ZNF189O75820 626 aaPredicted RBP6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms