RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 HERC5Q9UII4 1024 aaKnown RBP11.7□□□□□ -0.54
CLK3-208ENST00000562626 MGAMO43451 1857 aa11.7□□□□□ -0.54
CLK3-208ENST00000562626 ZMYM6O95789 1325 aa11.69□□□□□ -0.54
CLK3-208ENST00000562626 MYH6P13533 1939 aa11.69□□□□□ -0.54
CLK3-208ENST00000562626 PRDM1O75626 825 aa11.69□□□□□ -0.54
CLK3-208ENST00000562626 SLC10A3P09131 477 aa11.69□□□□□ -0.54
CLK3-208ENST00000562626 AKR1B1P15121 316 aa11.69□□□□□ -0.54
CLK3-208ENST00000562626 GUCY1A2P33402 732 aa11.69□□□□□ -0.54
CLK3-208ENST00000562626 CDK8P49336 464 aa11.69□□□□□ -0.54
CLK3-208ENST00000562626 PPARAQ07869 468 aa11.69□□□□□ -0.54
CLK3-208ENST00000562626 COL9A3Q14050 684 aaPredicted RBP11.69□□□□□ -0.54
CLK3-208ENST00000562626 NOL9Q5SY16 702 aaKnown RBP11.69□□□□□ -0.54
CLK3-208ENST00000562626 C16orf86Q6ZW13 317 aa11.69□□□□□ -0.54
CLK3-208ENST00000562626 TBC1D10CQ8IV04 446 aa11.69□□□□□ -0.54
CLK3-208ENST00000562626 WNK4Q96J92 1243 aa11.69□□□□□ -0.54
CLK3-208ENST00000562626 CAPNS2Q96L46 248 aa11.69□□□□□ -0.54
CLK3-208ENST00000562626 SMCHD1A6NHR9 2005 aa11.69□□□□□ -0.54
CLK3-208ENST00000562626 RASA1P20936 1047 aa11.68□□□□□ -0.54
CLK3-208ENST00000562626 CAP2P40123 477 aa11.68□□□□□ -0.54
CLK3-208ENST00000562626 ZNF157P51786 506 aaPredicted RBP11.68□□□□□ -0.54
CLK3-208ENST00000562626 DGKZQ13574 1117 aa11.68□□□□□ -0.54
CLK3-208ENST00000562626 PAXIP1Q6ZW49 1069 aaPredicted RBP11.68□□□□□ -0.54
CLK3-208ENST00000562626 SCYL3Q8IZE3 742 aa11.68□□□□□ -0.54
CLK3-208ENST00000562626 OPTNQ96CV9 577 aa11.68□□□□□ -0.54
CLK3-208ENST00000562626 HOOK2Q96ED9 719 aa11.68□□□□□ -0.54
CLK3-208ENST00000562626 HHIPL1Q96JK4 782 aa11.68□□□□□ -0.54
CLK3-208ENST00000562626 DSCC1Q9BVC3 393 aa11.68□□□□□ -0.54
CLK3-208ENST00000562626 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.68□□□□□ -0.54
CLK3-208ENST00000562626 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.68□□□□□ -0.54
CLK3-208ENST00000562626 NEDD4P46934 1319 aa11.67□□□□□ -0.54
CLK3-208ENST00000562626 WDR33Q9C0J8 1336 aaKnown RBP11.67□□□□□ -0.54
CLK3-208ENST00000562626 CASP8AP2Q9UKL3 1982 aa11.67□□□□□ -0.54
CLK3-208ENST00000562626 SPDYE5A6NIY4 337 aa11.67□□□□□ -0.54
CLK3-208ENST00000562626 CTNND1O60716 968 aaKnown RBP11.67□□□□□ -0.54
CLK3-208ENST00000562626 GH2P01242 217 aa11.67□□□□□ -0.54
CLK3-208ENST00000562626 PTPRAP18433 802 aa11.67□□□□□ -0.54
CLK3-208ENST00000562626 SPRYD7Q5W111 196 aa11.67□□□□□ -0.54
CLK3-208ENST00000562626 RUFY2Q8WXA3 655 aa11.67□□□□□ -0.54
CLK3-208ENST00000562626 SLC10A4Q96EP9 437 aa11.67□□□□□ -0.54
CLK3-208ENST00000562626 OTUD5Q96G74 571 aa11.67□□□□□ -0.54
CLK3-208ENST00000562626 NACAP1Q9BZK3 213 aa11.67□□□□□ -0.54
CLK3-208ENST00000562626 ANAPC4Q9UJX5 808 aa11.67□□□□□ -0.54
CLK3-208ENST00000562626 ZBTB21Q9ULJ3 1066 aa11.67□□□□□ -0.54
CLK3-208ENST00000562626 DOCK3Q8IZD9 2030 aa11.67□□□□□ -0.54
CLK3-208ENST00000562626 IRF6O14896 467 aa11.66□□□□□ -0.54
CLK3-208ENST00000562626 MFAP1P55081 439 aaKnown RBP11.66□□□□□ -0.54
CLK3-208ENST00000562626 SEPT2Q15019 361 aa11.66□□□□□ -0.54
CLK3-208ENST00000562626 CERKLQ49MI3 558 aaPredicted RBP11.66□□□□□ -0.54
CLK3-208ENST00000562626 STOX1Q6ZVD7 989 aa11.66□□□□□ -0.54
CLK3-208ENST00000562626 MAP4K1Q92918 833 aa11.66□□□□□ -0.54
CLK3-208ENST00000562626 DDRGK1Q96HY6 314 aa11.66□□□□□ -0.54
CLK3-208ENST00000562626 ABHD8Q96I13 439 aa11.66□□□□□ -0.54
CLK3-208ENST00000562626 PRDM10Q9NQV6 1147 aa11.66□□□□□ -0.54
CLK3-208ENST00000562626 RBM8AQ9Y5S9 174 aaKnown RBP11.66□□□□□ -0.54
CLK3-208ENST00000562626 CSADQ9Y600 493 aa11.66□□□□□ -0.54
CLK3-208ENST00000562626 A0A0G2JMZ2 1700 aa11.66□□□□□ -0.54
CLK3-208ENST00000562626 SEC24BO95487 1268 aa11.65□□□□□ -0.54
CLK3-208ENST00000562626 CYP21A2P08686 494 aa11.65□□□□□ -0.54
CLK3-208ENST00000562626 FGRP09769 529 aa11.65□□□□□ -0.54
CLK3-208ENST00000562626 KIF23Q02241 960 aaPredicted RBP11.65□□□□□ -0.54
CLK3-208ENST00000562626 MOGSQ13724 837 aa11.65□□□□□ -0.54
CLK3-208ENST00000562626 ABCB5Q2M3G0 1257 aa11.65□□□□□ -0.54
CLK3-208ENST00000562626 FAM47AQ5JRC9 791 aa11.65□□□□□ -0.54
CLK3-208ENST00000562626 SIAH1Q8IUQ4 282 aa11.65□□□□□ -0.54
CLK3-208ENST00000562626 MS4A4AQ96JQ5 239 aa11.65□□□□□ -0.54
CLK3-208ENST00000562626 TRIM34Q9BYJ4 488 aa11.65□□□□□ -0.54
CLK3-208ENST00000562626 ANO2Q9NQ90 1003 aa11.65□□□□□ -0.54
CLK3-208ENST00000562626 SWAP70Q9UH65 585 aa11.65□□□□□ -0.54
CLK3-208ENST00000562626 ZHX2Q9Y6X8 837 aa11.65□□□□□ -0.54
CLK3-208ENST00000562626 ZNFX1Q9P2E3 1918 aaKnown RBP11.64□□□□□ -0.55
CLK3-208ENST00000562626 IGKV6D-41A0A0C4DH26 115 aa11.64□□□□□ -0.55
CLK3-208ENST00000562626 A0A1W2PRG0 241 aa11.64□□□□□ -0.55
CLK3-208ENST00000562626 UNCXA6NJT0 531 aa11.64□□□□□ -0.55
CLK3-208ENST00000562626 NMT2O60551 498 aa11.64□□□□□ -0.55
CLK3-208ENST00000562626 ECE1P42892 770 aa11.64□□□□□ -0.55
CLK3-208ENST00000562626 RGS19P49795 217 aa11.64□□□□□ -0.55
CLK3-208ENST00000562626 PPIL2Q13356 520 aa11.64□□□□□ -0.55
CLK3-208ENST00000562626 C8orf34Q49A92 452 aa11.64□□□□□ -0.55
CLK3-208ENST00000562626 ERO1BQ86YB8 467 aa11.64□□□□□ -0.55
CLK3-208ENST00000562626 AMOTL1Q8IY63 956 aa11.64□□□□□ -0.55
CLK3-208ENST00000562626 ACER1Q8TDN7 264 aa11.64□□□□□ -0.55
CLK3-208ENST00000562626 PTPN18Q99952 460 aa11.64□□□□□ -0.55
CLK3-208ENST00000562626 AFG3L2Q9Y4W6 797 aa11.64□□□□□ -0.55
CLK3-208ENST00000562626 PLIN4Q96Q06 1357 aa11.64□□□□□ -0.55
CLK3-208ENST00000562626 MPHOSPH10O00566 681 aaKnown RBP11.63□□□□□ -0.55
CLK3-208ENST00000562626 PPATQ06203 517 aa11.63□□□□□ -0.55
CLK3-208ENST00000562626 RAB3GAP1Q15042 981 aa11.63□□□□□ -0.55
CLK3-208ENST00000562626 NECTIN1Q15223 517 aa11.63□□□□□ -0.55
CLK3-208ENST00000562626 KIAA1755Q5JYT7 1200 aa11.63□□□□□ -0.55
CLK3-208ENST00000562626 AKNAD1Q5T1N1 836 aa11.63□□□□□ -0.55
CLK3-208ENST00000562626 RASEFQ8IZ41 740 aa11.63□□□□□ -0.55
CLK3-208ENST00000562626 STAG1Q8WVM7 1258 aa11.63□□□□□ -0.55
CLK3-208ENST00000562626 BRI3BPQ8WY22 251 aa11.63□□□□□ -0.55
CLK3-208ENST00000562626 CCDC102AQ96A19 550 aa11.63□□□□□ -0.55
CLK3-208ENST00000562626 PICK1Q9NRD5 415 aa11.63□□□□□ -0.55
CLK3-208ENST00000562626 IL17RBQ9NRM6 502 aa11.63□□□□□ -0.55
CLK3-208ENST00000562626 KCNH4Q9UQ05 1017 aa11.63□□□□□ -0.55
CLK3-208ENST00000562626 BAZ2BQ9UIF8 2168 aaKnown RBP11.62□□□□□ -0.55
CLK3-208ENST00000562626 TRIM75PA6NK02 468 aa11.62□□□□□ -0.55
CLK3-208ENST00000562626 B4E1Z4 1266 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms